mRNA_M-pyrifera_M_contig7640.18011.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7640.18011.1
Unique NamemRNA_M-pyrifera_M_contig7640.18011.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7640.18011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7640contigM-pyrifera_M_contig7640:5702..6669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size968
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7640.18011.1prot_M-pyrifera_M_contig7640.18011.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7640 5755..6249 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.3553843-UTR-M-pyrifera_M_contig7640:5701..57541622816663.3553843-UTR-M-pyrifera_M_contig7640:5701..5754Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7640 5702..5754 +
1692278105.8047736-UTR-M-pyrifera_M_contig7640:5701..57541692278105.8047736-UTR-M-pyrifera_M_contig7640:5701..5754Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7640 5702..5754 +
1622816663.379563-UTR-M-pyrifera_M_contig7640:6249..66691622816663.379563-UTR-M-pyrifera_M_contig7640:6249..6669Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7640 6250..6669 +
1692278105.833108-UTR-M-pyrifera_M_contig7640:6249..66691692278105.833108-UTR-M-pyrifera_M_contig7640:6249..6669Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7640 6250..6669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.366357-CDS-M-pyrifera_M_contig7640:5754..62491622816663.366357-CDS-M-pyrifera_M_contig7640:5754..6249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7640 5755..6249 +
1692278105.814911-CDS-M-pyrifera_M_contig7640:5754..62491692278105.814911-CDS-M-pyrifera_M_contig7640:5754..6249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7640 5755..6249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7640.18011.1

>prot_M-pyrifera_M_contig7640.18011.1 ID=prot_M-pyrifera_M_contig7640.18011.1|Name=mRNA_M-pyrifera_M_contig7640.18011.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
MMLIIITISITPSPLSDALSLHLPSFSFLLSCPIIAPSLHPHIIATLRAS
PLHMLTLFSSTHLAAQPPYILKNELMTPSLLLVQGPPLRPTNLRTANGKN
RSNDWHEETQNTKTSTHTHTLPFLPSVQRAYYYPALLHQVHTVGWELVRD
TKQRTSTSPMPCLS*
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mRNA from alignment at M-pyrifera_M_contig7640:5702..6669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7640.18011.1 ID=mRNA_M-pyrifera_M_contig7640.18011.1|Name=mRNA_M-pyrifera_M_contig7640.18011.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=968bp|location=Sequence derived from alignment at M-pyrifera_M_contig7640:5702..6669+ (Macrocystis pyrifera P11B4 male)
AATGATCACCATCATTATCATTATTATAAATCCTCATCATCACTACCATC
GTCATGATGCTCATCATTATCACAATCAGCATCACTCCCTCCCCTCTCTC
TGATGCCTTGTCACTACACCTTCCTTCCTTTTCCTTCCTTTTATCCTGCC
CTATTATCGCGCCAAGCCTCCATCCACATATCATCGCCACACTTCGCGCT
TCTCCCCTCCACATGCTCACCTTATTCTCTTCCACTCACTTAGCAGCCCA
GCCCCCATACATCTTAAAAAACGAGTTAATGACTCCCTCCCTTTTGTTAG
TTCAAGGTCCGCCACTCCGACCAACCAATCTACGCACAGCGAACGGAAAA
AATAGATCGAATGACTGGCATGAAGAGACACAGAACACAAAAACAAGCAC
ACACACACACACCCTCCCGTTCTTGCCGAGTGTACAACGCGCCTACTACT
ACCCCGCCCTCCTTCACCAAGTCCATACCGTTGGGTGGGAGCTAGTCCGA
GATACCAAACAAAGAACCTCGACATCGCCCATGCCGTGTCTTTCGTAGCC
ACCATCGACCCTGAACGCTCCATCCGTATGGAAGAAGATAAAGCATACGC
CAACCATTCACCAAACCCGCCGATCAATACAATAAATCAATCAATCAATC
AATTAATTGATTGGTTCATCAATCAGCAAATCGACCAACTCATTGATGAA
CCAATCGATCAACGAATCGACCAATTTTACCCGATTGATGAACCAATCAG
TCGTATCAACCAATCAACAAATCGACCAATTCGTTGACTTAATAAGCAGT
CCATCGGGTTATCAACCCATCAGCCAACCAAAAATAGGCAAGCTAACCTA
TCAATCGACCAACCACTCAATTAAAAGACCGATCAATCAACCAATTGACC
AATCAATAAACTAACCAATCGATCAACCAACTAAATAATAAACCGACCAA
TCGACCAATCAATTCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7640:5702..6669+

>mRNA_M-pyrifera_M_contig7640.18011.1 ID=mRNA_M-pyrifera_M_contig7640.18011.1|Name=mRNA_M-pyrifera_M_contig7640.18011.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig7640:5702..6669+ (Macrocystis pyrifera P11B4 male)
ATGATGCTCATCATTATCACAATCAGCATCACTCCCTCCCCTCTCTCTGA
TGCCTTGTCACTACACCTTCCTTCCTTTTCCTTCCTTTTATCCTGCCCTA
TTATCGCGCCAAGCCTCCATCCACATATCATCGCCACACTTCGCGCTTCT
CCCCTCCACATGCTCACCTTATTCTCTTCCACTCACTTAGCAGCCCAGCC
CCCATACATCTTAAAAAACGAGTTAATGACTCCCTCCCTTTTGTTAGTTC
AAGGTCCGCCACTCCGACCAACCAATCTACGCACAGCGAACGGAAAAAAT
AGATCGAATGACTGGCATGAAGAGACACAGAACACAAAAACAAGCACACA
CACACACACCCTCCCGTTCTTGCCGAGTGTACAACGCGCCTACTACTACC
CCGCCCTCCTTCACCAAGTCCATACCGTTGGGTGGGAGCTAGTCCGAGAT
ACCAAACAAAGAACCTCGACATCGCCCATGCCGTGTCTTTCGTAGATGAT
GCTCATCATTATCACAATCAGCATCACTCCCTCCCCTCTCTCTGATGCCT
TGTCACTACACCTTCCTTCCTTTTCCTTCCTTTTATCCTGCCCTATTATC
GCGCCAAGCCTCCATCCACATATCATCGCCACACTTCGCGCTTCTCCCCT
CCACATGCTCACCTTATTCTCTTCCACTCACTTAGCAGCCCAGCCCCCAT
ACATCTTAAAAAACGAGTTAATGACTCCCTCCCTTTTGTTAGTTCAAGGT
CCGCCACTCCGACCAACCAATCTACGCACAGCGAACGGAAAAAATAGATC
GAATGACTGGCATGAAGAGACACAGAACACAAAAACAAGCACACACACAC
ACACCCTCCCGTTCTTGCCGAGTGTACAACGCGCCTACTACTACCCCGCC
CTCCTTCACCAAGTCCATACCGTTGGGTGGGAGCTAGTCCGAGATACCAA
ACAAAGAACCTCGACATCGCCCATGCCGTGTCTTTCGTAG
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