mRNA_M-pyrifera_M_contig76245.17976.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76245.17976.1
Unique NamemRNA_M-pyrifera_M_contig76245.17976.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76245.17976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76245contigM-pyrifera_M_contig76245:175..837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size663
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.580247-UTR-M-pyrifera_M_contig76245:174..5011622816661.580247-UTR-M-pyrifera_M_contig76245:174..501Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76245 175..501 +
1692278104.7877517-UTR-M-pyrifera_M_contig76245:174..5011692278104.7877517-UTR-M-pyrifera_M_contig76245:174..501Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76245 175..501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.5932305-CDS-M-pyrifera_M_contig76245:501..8371622816661.5932305-CDS-M-pyrifera_M_contig76245:501..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76245 502..837 +
1692278104.801521-CDS-M-pyrifera_M_contig76245:501..8371692278104.801521-CDS-M-pyrifera_M_contig76245:501..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76245 502..837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76245.17976.1prot_M-pyrifera_M_contig76245.17976.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76245 502..837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76245.17976.1

>prot_M-pyrifera_M_contig76245.17976.1 ID=prot_M-pyrifera_M_contig76245.17976.1|Name=mRNA_M-pyrifera_M_contig76245.17976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MAIYLGHDMVCGTLHSTLFWRYLTVVCIDVRCTPFLCMVVFVDRGIISLV
RLRGKQGGRGYITAHIWIPAEHRGGARGISHRWAGFKNKGLFSTSPSRVG
NMKYPFCFFRL*
back to top

mRNA from alignment at M-pyrifera_M_contig76245:175..837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76245.17976.1 ID=mRNA_M-pyrifera_M_contig76245.17976.1|Name=mRNA_M-pyrifera_M_contig76245.17976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=663bp|location=Sequence derived from alignment at M-pyrifera_M_contig76245:175..837+ (Macrocystis pyrifera P11B4 male)
CTCACAGGGGTGCGTACTGGGTGTCATCCTAATGTTGATATTTGTCAGCA
TGCTGTCTGCTGGGTACCCGTGTCCTTTTGGCACGGTAGATATCGTTAAT
TTCGAAAACTTGTTCACACACGATTTCGACCAACTCGACTTCTAACGAAG
GGGTGGATCTCTGCTAGCTCGCAATAATGGTTTCGTTGCATGCTGTTTCG
AATTGGGCGAGCGGTGGTCGTGTTGCAGTTGTTTGGTATAGGCACCATCA
GCCGTCAGGCTCTGCGTTTTCTAATGAAGGGGGGAGGGGGGGATGACGAA
CCATCCCCGGCGAAGGTCTGAAAACGTATGGCAATCTACTTGGGGCATGA
TATGGTATGTGGCACGCTGCATTCGACACTGTTCTGGAGATATCTGACGG
TTGTATGTATAGATGTGAGATGCACTCCTTTTTTGTGCATGGTGGTCTTC
GTCGACCGAGGGATTATCTCGCTCGTTCGACTGCGGGGCAAGCAAGGGGG
CCGCGGGTACATTACGGCACATATCTGGATCCCGGCGGAGCACCGTGGCG
GTGCTCGAGGCATTTCACATCGCTGGGCTGGATTTAAAAACAAGGGATTG
TTTTCCACCTCGCCGAGCCGAGTGGGTAACATGAAATACCCATTTTGTTT
TTTTCGTTTATAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig76245:175..837+

>mRNA_M-pyrifera_M_contig76245.17976.1 ID=mRNA_M-pyrifera_M_contig76245.17976.1|Name=mRNA_M-pyrifera_M_contig76245.17976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig76245:175..837+ (Macrocystis pyrifera P11B4 male)
ATGGCAATCTACTTGGGGCATGATATGGTATGTGGCACGCTGCATTCGAC
ACTGTTCTGGAGATATCTGACGGTTGTATGTATAGATGTGAGATGCACTC
CTTTTTTGTGCATGGTGGTCTTCGTCGACCGAGGGATTATCTCGCTCGTT
CGACTGCGGGGCAAGCAAGGGGGCCGCGGGTACATTACGGCACATATCTG
GATCCCGGCGGAGCACCGTGGCGGTGCTCGAGGCATTTCACATCGCTGGG
CTGGATTTAAAAACAAGGGATTGTTTTCCACCTCGCCGAGCCGAGTGGGT
AACATGAAATACCCATTTTGTTTTTTTCGTTTATAAATGGCAATCTACTT
GGGGCATGATATGGTATGTGGCACGCTGCATTCGACACTGTTCTGGAGAT
ATCTGACGGTTGTATGTATAGATGTGAGATGCACTCCTTTTTTGTGCATG
GTGGTCTTCGTCGACCGAGGGATTATCTCGCTCGTTCGACTGCGGGGCAA
GCAAGGGGGCCGCGGGTACATTACGGCACATATCTGGATCCCGGCGGAGC
ACCGTGGCGGTGCTCGAGGCATTTCACATCGCTGGGCTGGATTTAAAAAC
AAGGGATTGTTTTCCACCTCGCCGAGCCGAGTGGGTAACATGAAATACCC
ATTTTGTTTTTTTCGTTTATAA
back to top