mRNA_M-pyrifera_M_contig76185.17967.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76185.17967.1
Unique NamemRNA_M-pyrifera_M_contig76185.17967.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: D8LV95_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LV95_BLAHO)

HSP 1 Score: 109 bits (272), Expect = 3.880e-27
Identity = 63/143 (44.06%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    1 LVTGTPPYFDPGLSGQPAHGESAACLFERRGGVEEYCRAASVLLRDGGDFVVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCVVHFVKEEXXXXXXXXXSGEEI-------LTIRDKDGKWTEEYERVLLDMGKP 408
            ++TGTPPYF  G     +  +  ACLFE RGGVE+Y  AA   L DGG FVVV + L KER   A   H +Q +    F+PKEGK PLF +   +K E          GEE+       + IRDKDG +T EY+++L++MG P
Sbjct:   59 IITGTPPYFKAGEGALSSKVDQKACLFEFRGGVEDYVEAAHGYLADGGHFVVVESALGKERFDQAAWMHHMQIVERWDFVPKEGKPPLFSIADMIKRE----------GEEMKKYEVKTVVIRDKDGNYTPEYQKLLVEMGFP 191          
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: A0A196SLC4_BLAHN (O-methyltransferase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SLC4_BLAHN)

HSP 1 Score: 105 bits (262), Expect = 9.470e-25
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 LVTGTPPYFDPGLSGQPAHGESAACLFERRGGVEEYCRAASVLLRDGGDFVVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCVVHFVKEEXXXXXXXXXSGEEILTIRDKDGKWTEEYERVLLDMGKPIKKD 420
            +VTGTPPYF  G +  P+  +  ACLFE RGGVEEY +AA   L + G FVVV + L K R   A   + ++ +    FIPKEGK  LF +   VK++             I TIR+K+GK+T EY ++LLDMG P ++D
Sbjct:  150 IVTGTPPYFKEGEAALPSKVDQKACLFEFRGGVEEYVKAARRYLTEEGHFVVVESALGKARFDAAVKEYEMRIVRRWDFIPKEGKPALFSIADIVKKKEGEAWDGKYDVISI-TIRNKEGKYTREYHQLLLDMGFPPQRD 288          
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: A0A482R7R1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R7R1_9ARCH)

HSP 1 Score: 75.1 bits (183), Expect = 6.210e-13
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 LVTGTPPYFDPGLSGQPAHGESAACLFERRGGVEEYCRAASVLLRDGGDFVVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCV 273
            ++TGTPPYF+   S  P   ESA CLFE RGG+EEY  AA+ LL   G FVV    L+ +R   A     LQ +     IPK GK PLF V
Sbjct:  323 VITGTPPYFNVADSALPGCEESARCLFEYRGGIEEYTLAAARLLAPRGLFVVCEGALSVQRGYTAAAAAGLQMLARIDAIPKAGKPPLFIV 413          
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: A0A7S1UI78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI78_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 8.510e-13
Identity = 53/160 (33.12%), Postives = 72/160 (45.00%), Query Frame = 1
Query:    1 LVTGTPPYFDPGLSGQPAHGESAA-CLFERRGGVEEYCRAASVLLRDGGDFVVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCVVHFVKEEXXXXXXXXXSG-------------EEILTIRDKDGKWTEEYERVLLDMGKPIKKDREKKGE 438
            +VTGTPPYF     G  +       C +E RGGVE YC AA+  L D G F VV A L  +          L  ++    IP+EGK  LF +    +           +G             +E  T+RD++G+ T++Y  +L DMG P    R KK E
Sbjct:  139 IVTGTPPYFKVKEMGTVSKKRQCGPCRYEFRGGVEAYCEAAARALADDGVFAVVEASLANDHVYEGATAAGLAIVSHMDVIPREGKPSLFSLFCMRRNTDAGTPAARAAGPVTADEAAHVGCAKETFTVRDREGRHTDDYRAMLADMGYPPPARRNKKKE 298          
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: B5YNA4_THAPS (tRNA pseudouridine(55) synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNA4_THAPS)

HSP 1 Score: 72.0 bits (175), Expect = 8.090e-12
Identity = 54/161 (33.54%), Postives = 73/161 (45.34%), Query Frame = 1
Query:    1 LVTGTPPYF----------DPGLSGQ-----------PAHGESAACLFERRGGVEEYCRAASVLLRDGGDFVVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCVVHFVKEEXXXXXXXXXSGEEI---LTIRDKDGKWTEEYERVLLDMGKPI 411
            L+TGTPPYF          + G + Q           P   +SA    E RGGVE YC+AAS +L+  G FVV    LN  R  +      L    V   + K G+K     V+ +K++            E+   L +R  +GKWTEEYERV+  M  P+
Sbjct:  426 LITGTPPYFRVDFSAISTTEKGQNNQVITAVINQGAMPTSIQSAPARCEFRGGVEAYCQAASAMLKPNGMFVVCENWLNDNRVYIGAKEAGLVIDRVWPVMGKTGRKEPLFAVYVMKKQSSQNDSTGEVRTEVNPPLVVRGANGKWTEEYERVMEAMSIPV 586          
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: A0A7Y5U828_9DELT (Methyltransferase domain-containing protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5U828_9DELT)

HSP 1 Score: 67.4 bits (163), Expect = 1.620e-10
Identity = 48/136 (35.29%), Postives = 66/136 (48.53%), Query Frame = 1
Query:    1 LVTGTPPYFDPGLSGQPAHGESAACLFERRGGVEEYCRAASVLLRDGGDFVVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCVVHFVKEEXXXXXXXXXSGEEILTIRDKDGKWTEEYERVLLDMGKP 408
            LVTGTPPY   G        +   C FE RGG+E+YC AAS LLRDGG FVV   V   +R   A     +        +P++GK  LF V  FV ++           E    +RD+ G+ T++ +    ++G P
Sbjct:  147 LVTGTPPYIPIGSGLVSDRTQREPCYFETRGGLEDYCSAASHLLRDGGRFVVCAGVHPADRGDRAASAAKMFVERRIDVVPRDGKPVLFRV--FVMKKLIDGPPPPEEFE-CFVVRDERGELTDDMKEAKRELGMP 279          
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: A0A7W0VLQ3_9DELT (Methyltransferase domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0VLQ3_9DELT)

HSP 1 Score: 66.2 bits (160), Expect = 5.440e-10
Identity = 41/136 (30.15%), Postives = 60/136 (44.12%), Query Frame = 1
Query:    1 LVTGTPPYFDPGLSGQPAHGESAACLFERRGGVEEYCRAASVLLRDGGDFVVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCVVHFVKEEXXXXXXXXXSGEEILTIRDKDGKWTEEYERVLLDMGKP 408
            LVTGTPPYF  G   +     +A   FE RGGVE+Y   A+  +   G   +  + L ++R        +L        +P+ GK PL  V                     L +RD++G WT +++RV  D+G P
Sbjct:  192 LVTGTPPYFPIGTGTESEKTHAAPARFEHRGGVEDYLAIAARRVTPTGTIAICTSALERDRVANGARSAALAHREAWAIVPRAGKPPLVYVDVLAASGTLEHHE--------LVVRDREGTWTADFQRVRTDLGMP 319          
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: A0A3M1Z7Y8_9BACT (Methyltransferase domain-containing protein (Fragment) n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M1Z7Y8_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 1.300e-9
Identity = 43/124 (34.68%), Postives = 61/124 (49.19%), Query Frame = 1
Query:    1 LVTGTPPYFDPGLSGQPAHGESAACLFERRGGVEEYCRAASVLLRDGGDFVVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCVVHFVKEEXXXXXXXXXSGEEILTIRDKDGKWTE 372
            LVTG+PPY +PG   +    +   C FE RGG+E Y R A+  L +GG FV V+A   +E  + A     L  I V   + +EG++ L  +    + +           E  LT+R  DG WTE
Sbjct:  145 LVTGSPPYLEPGEGTRSPLPQRGPCRFEDRGGIEGYARVAAERLGEGGLFVWVHATRYREGNLRAAEAVGLGRIAVRPVVFREGRESLISLFCASRSDRPVVEE-----ERPLTVRAADGTWTE 263          
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: A0A6N2CZ19_9DELT (DOT1 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A6N2CZ19_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 1.630e-6
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1
Query:    1 LVTGTPPYFDPGLSGQPAHGESAACLFERRGGVEEYCRAASVLLRDGGDFVVV 159
            L+TG+PPY  PG        + AAC FE RGG+E+YC  A+ LL   G FVVV
Sbjct:  131 LITGSPPYLPPGTGVPSPDPQRAACRFELRGGIEDYCATAASLLAPDGVFVVV 183          
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Match: A0A7S2ECB6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ECB6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.330e-6
Identity = 43/145 (29.66%), Postives = 64/145 (44.14%), Query Frame = 1
Query:   43 GQPAHGESAACLFERRGGVEEYCRAASVLLR---DGGDFVVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCVVHFV------KEEXXXXXXXXXSGE------------EILTIRDKDGKWTEEYERVLLDMGKPIK 414
            G P   +SA    E RGG+E YC AAS +L+   DGG F+V    LN+ R         +  ++V     K G+K     V+ +      KEE         +G+              +++R+ +GKWTEEY  +L  M  P +
Sbjct:   22 GMPTSMQSAPARCEFRGGIEAYCAAASSVLKEQDDGGRFIVCENWLNEHRVHKGAHDAQMDILSVYPVKGKVGRKENLFAVYVMAKKKKRKEEGMEDKEGGCNGQGDDALRRDGLYRPAISVREDNGKWTEEYADILEFMSIPAR 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76185.17967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LV95_BLAHO3.880e-2744.06Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A196SLC4_BLAHN9.470e-2544.29O-methyltransferase n=1 Tax=Blastocystis sp. subty... [more]
A0A482R7R1_9ARCH6.210e-1348.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1UI78_9STRA8.510e-1333.13Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
B5YNA4_THAPS8.090e-1233.54tRNA pseudouridine(55) synthase n=1 Tax=Thalassios... [more]
A0A7Y5U828_9DELT1.620e-1035.29Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7W0VLQ3_9DELT5.440e-1030.15Methyltransferase domain-containing protein n=1 Ta... [more]
A0A3M1Z7Y8_9BACT1.300e-934.68Methyltransferase domain-containing protein (Fragm... [more]
A0A6N2CZ19_9DELT1.630e-650.94DOT1 domain-containing protein n=1 Tax=Deltaproteo... [more]
A0A7S2ECB6_9STRA6.330e-629.66Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76185contigM-pyrifera_M_contig76185:468..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.6
Seed ortholog evalue8.7e-14
Seed eggNOG ortholog448385.sce2317
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase small domain
EggNOG OGs1RDSC@1224,2WVJG@28221,2YVZ6@29,42RIN@68525,COG4123@1,COG4123@2
COG Functional cat.S
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
Exons2
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.1259544-CDS-M-pyrifera_M_contig76185:467..7951622816661.1259544-CDS-M-pyrifera_M_contig76185:467..795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76185 468..795 +
1692278104.5502753-CDS-M-pyrifera_M_contig76185:467..7951692278104.5502753-CDS-M-pyrifera_M_contig76185:467..795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76185 468..795 +
1622816661.1359491-CDS-M-pyrifera_M_contig76185:876..9951622816661.1359491-CDS-M-pyrifera_M_contig76185:876..995Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76185 877..995 +
1692278104.5622387-CDS-M-pyrifera_M_contig76185:876..9951692278104.5622387-CDS-M-pyrifera_M_contig76185:876..995Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76185 877..995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76185.17967.1prot_M-pyrifera_M_contig76185.17967.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76185 468..995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76185.17967.1

>prot_M-pyrifera_M_contig76185.17967.1 ID=prot_M-pyrifera_M_contig76185.17967.1|Name=mRNA_M-pyrifera_M_contig76185.17967.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
LVTGTPPYFDPGLSGQPAHGESAACLFERRGGVEEYCRAASVLLRDGGDF
VVVNAVLNKERTILAGPPHSLQPITVTTFIPKEGKKPLFCVVHFVKEERR
GGGGGGGSGEEILTIRDKDGKWTEEYERVLLDMGKPIKKDREKKGEAK*
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mRNA from alignment at M-pyrifera_M_contig76185:468..995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76185.17967.1 ID=mRNA_M-pyrifera_M_contig76185.17967.1|Name=mRNA_M-pyrifera_M_contig76185.17967.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig76185:468..995+ (Macrocystis pyrifera P11B4 male)
TTGGTGACTGGAACTCCACCCTACTTCGATCCTGGTCTTTCAGGACAGCC TGCCCATGGCGAGTCTGCTGCTTGTTTGTTTGAGCGTCGTGGAGGGGTGG AGGAGTATTGTCGTGCTGCGTCAGTGTTGCTTCGCGATGGTGGGGATTTC GTGGTGGTGAACGCCGTGTTGAACAAGGAGAGGACCATTCTCGCCGGACC TCCACACAGCCTCCAACCCATCACCGTCACCACCTTCATCCCGAAAGAAG GCAAGAAACCGCTTTTTTGCGTCGTCCATTTCGTCAAGGAGGAGAGGAGG GGAGGGGGAGGGGGTGGAGGGAGCGGAGGTGATGGACGGGGTGGGGGAGA AGGAAGAGCGGGTGGGGAGGAGGAGAGGATGATACGGGTGGGAGATGTGG AGTTGAGAGAGGAGATTCTCACCATTCGAGACAAGGATGGAAAGTGGACT GAAGAGTATGAGAGAGTATTGCTAGACATGGGGAAACCCATCAAGAAAGA CAGAGAAAAGAAAGGGGAAGCGAAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76185:468..995+

>mRNA_M-pyrifera_M_contig76185.17967.1 ID=mRNA_M-pyrifera_M_contig76185.17967.1|Name=mRNA_M-pyrifera_M_contig76185.17967.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig76185:468..995+ (Macrocystis pyrifera P11B4 male)
TTGGTGACTGGAACTCCACCCTACTTCGATCCTGGTCTTTCAGGACAGCC
TGCCCATGGCGAGTCTGCTGCTTGTTTGTTTGAGCGTCGTGGAGGGGTGG
AGGAGTATTGTCGTGCTGCGTCAGTGTTGCTTCGCGATGGTGGGGATTTC
GTGGTGGTGAACGCCGTGTTGAACAAGGAGAGGACCATTCTCGCCGGACC
TCCACACAGCCTCCAACCCATCACCGTCACCACCTTCATCCCGAAAGAAG
GCAAGAAACCGCTTTTTTGCGTCGTCCATTTCGTCAAGGAGGAGAGGAGG
GGAGGGGGAGGGGGTGGAGGGAGCGGAGTTGGTGACTGGAACTCCACCCT
ACTTCGATCCTGGTCTTTCAGGACAGCCTGCCCATGGCGAGTCTGCTGCT
TGTTTGTTTGAGCGTCGTGGAGGGGTGGAGGAGTATTGTCGTGCTGCGTC
AGTGTTGCTTCGCGATGGTGGGGATTTCGTGGTGGTGAACGCCGTGTTGA
ACAAGGAGAGGACCATTCTCGCCGGACCTCCACACAGCCTCCAACCCATC
ACCGTCACCACCTTCATCCCGAAAGAAGGCAAGAAACCGCTTTTTTGCGT
CGTCCATTTCGTCAAGGAGGAGAGGAGGGGAGGGGGAGGGGGTGGAGGGA
GCGGAGAGGAGATTCTCACCATTCGAGACAAGGATGGAAAGTGGACTGAA
GAGTATGAGAGAGTATTGCTAGACATGGGGAAACCCATCAAGAAAGACAG
AGAAAAGAAAGGGGAAGCGAAATGAAGGAGATTCTCACCATTCGAGACAA
GGATGGAAAGTGGACTGAAGAGTATGAGAGAGTATTGCTAGACATGGGGA
AACCCATCAAGAAAGACAGAGAAAAGAAAGGGGAAGCGAAATGA
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