mRNA_M-pyrifera_M_contig76177.17966.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76177.17966.1
Unique NamemRNA_M-pyrifera_M_contig76177.17966.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76177.17966.1 vs. uniprot
Match: UPI00037D3768 (T9SS type A sorting domain-containing protein n=1 Tax=Lewinella cohaerens TaxID=70995 RepID=UPI00037D3768)

HSP 1 Score: 58.9 bits (141), Expect = 6.050e-6
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  703 ITRTWTATD--GFSSDTQVQLISVTDDTPPNFTSFPNTFSAECGDSLDPANTGGTPTASDDC 882
            I RTWTAT   G +S T VQ I++ D+ PP+F SFP+  + ECGDS DPA+TG TP+ASD C
Sbjct:  692 IARTWTATSPCGITS-TCVQSITIVDNLPPSFVSFPSDTNVECGDSTDPADTG-TPSASDFC 751
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76177.17966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00037D37686.050e-658.06T9SS type A sorting domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76177contigM-pyrifera_M_contig76177:124..1035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog1122176.KB903565_gene3382
Preferred namexynX1
KEGG rclassRC00078
KEGG koko:K01083,ko:K07004,ko:K12548
KEGG ReactionR03371
KEGG Pathwayko00562,map00562
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase S8 family
EggNOG OGs1IXV1@117747,4PKD0@976,COG2304@1,COG2304@2,COG2374@1,COG2374@2,COG3391@1,COG3391@2,COG4935@1,COG4935@2
EC3.1.3.8
COG Functional cat.O
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size912
Cds size912
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.096168-CDS-M-pyrifera_M_contig76177:123..10351622816661.096168-CDS-M-pyrifera_M_contig76177:123..1035Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76177 124..1035 -
1692278104.5364704-CDS-M-pyrifera_M_contig76177:123..10351692278104.5364704-CDS-M-pyrifera_M_contig76177:123..1035Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76177 124..1035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76177.17966.1prot_M-pyrifera_M_contig76177.17966.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76177 124..1035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76177.17966.1

>prot_M-pyrifera_M_contig76177.17966.1 ID=prot_M-pyrifera_M_contig76177.17966.1|Name=mRNA_M-pyrifera_M_contig76177.17966.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=304bp
KSDQDTTYRFTLFASGDASTFVQFDLPISAGIVDTDFVIPFTSFVGAPGF
DFTSVGALQIVANVEGLPEVDADMSFLGITANVVGGVVFFDCDQDGVEGF
GEIGYPGVQANLLDMGGNILASAITATDGSFAIVTGPGTYRICLVGSTFS
TPTVPSTGCSDFFTLGASEDRFEDTFGCYVPVEVTAPAGESLDCTECFTA
SSSCTGVATAVGCDSSVTVSSTDSIDTVCTDTFTITRTWTATDGFSSDTQ
VQLISVTDDTPPNFTSFPNTFSAECGDSLDPANTGGTPTASDDCSNFPTV
SYFD
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mRNA from alignment at M-pyrifera_M_contig76177:124..1035-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76177.17966.1 ID=mRNA_M-pyrifera_M_contig76177.17966.1|Name=mRNA_M-pyrifera_M_contig76177.17966.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig76177:124..1035- (Macrocystis pyrifera P11B4 male)
AAAAGCGACCAGGATACGACCTACCGATTCACCCTGTTTGCCTCTGGTGA
TGCCTCGACCTTTGTTCAGTTCGACCTCCCCATCTCCGCAGGGATTGTTG
ACACGGACTTTGTTATTCCATTCACCAGCTTCGTGGGAGCTCCTGGATTC
GACTTTACGAGTGTTGGAGCGCTCCAAATCGTGGCCAACGTTGAAGGACT
TCCCGAAGTTGATGCAGATATGTCTTTCTTGGGTATTACCGCCAACGTAG
TTGGGGGAGTGGTTTTCTTTGACTGTGACCAGGACGGAGTCGAGGGCTTT
GGGGAAATTGGCTACCCTGGTGTCCAGGCTAATCTTTTGGATATGGGCGG
CAACATCCTTGCGTCTGCTATAACTGCAACCGACGGAAGTTTCGCTATTG
TCACGGGTCCAGGAACCTATCGGATTTGTTTGGTAGGCTCTACCTTCAGC
ACTCCCACCGTGCCCTCAACCGGCTGCTCAGACTTCTTTACTTTAGGTGC
TAGCGAAGATCGCTTTGAGGATACTTTCGGTTGCTACGTCCCTGTTGAAG
TTACTGCTCCTGCTGGCGAAAGCCTTGACTGTACTGAGTGCTTCACTGCC
TCTAGTTCTTGCACTGGGGTCGCCACCGCTGTTGGCTGTGACTCGAGTGT
GACTGTAAGCTCGACTGACTCGATCGATACGGTCTGCACCGACACTTTCA
CTATAACGCGAACGTGGACTGCCACGGATGGTTTCTCTTCCGACACTCAA
GTGCAGCTCATCTCTGTAACTGATGACACTCCACCGAACTTCACCTCGTT
CCCCAACACTTTCTCTGCTGAGTGTGGAGATTCTCTTGATCCAGCAAATA
CTGGTGGCACGCCCACAGCCAGCGATGACTGTAGCAACTTTCCAACGGTG
AGCTATTTCGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76177:124..1035-

>mRNA_M-pyrifera_M_contig76177.17966.1 ID=mRNA_M-pyrifera_M_contig76177.17966.1|Name=mRNA_M-pyrifera_M_contig76177.17966.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1824bp|location=Sequence derived from alignment at M-pyrifera_M_contig76177:124..1035- (Macrocystis pyrifera P11B4 male)
AAAAGCGACCAGGATACGACCTACCGATTCACCCTGTTTGCCTCTGGTGA
TGCCTCGACCTTTGTTCAGTTCGACCTCCCCATCTCCGCAGGGATTGTTG
ACACGGACTTTGTTATTCCATTCACCAGCTTCGTGGGAGCTCCTGGATTC
GACTTTACGAGTGTTGGAGCGCTCCAAATCGTGGCCAACGTTGAAGGACT
TCCCGAAGTTGATGCAGATATGTCTTTCTTGGGTATTACCGCCAACGTAG
TTGGGGGAGTGGTTTTCTTTGACTGTGACCAGGACGGAGTCGAGGGCTTT
GGGGAAATTGGCTACCCTGGTGTCCAGGCTAATCTTTTGGATATGGGCGG
CAACATCCTTGCGTCTGCTATAACTGCAACCGACGGAAGTTTCGCTATTG
TCACGGGTCCAGGAACCTATCGGATTTGTTTGGTAGGCTCTACCTTCAGC
ACTCCCACCGTGCCCTCAACCGGCTGCTCAGACTTCTTTACTTTAGGTGC
TAGCGAAGATCGCTTTGAGGATACTTTCGGTTGCTACGTCCCTGTTGAAG
TTACTGCTCCTGCTGGCGAAAGCCTTGACTGTACTGAGTGCTTCACTGCC
TCTAGTTCTTGCACTGGGGTCGCCACCGCTGTTGGCTGTGACTCGAGTGT
GACTGTAAGCTCGACTGACTCGATCGATACGGTCTGCACCGACACTTTCA
CTATAACGCGAACGTGGACTGCCACGGATGGTTTCTCTTCCGACACTCAA
GTGCAGCTCATCTCTGTAACTGATGACACTCCACCGAACTTCACCTCGTT
CCCCAACACTTTCTCTGCTGAGTGTGGAGATTCTCTTGATCCAGCAAATA
CTGGTGGCACGCCCACAGCCAGCGATGACTGTAGCAACTTTCCAACGGTG
AGCTATTTCGATAAAAGCGACCAGGATACGACCTACCGATTCACCCTGTT
TGCCTCTGGTGATGCCTCGACCTTTGTTCAGTTCGACCTCCCCATCTCCG
CAGGGATTGTTGACACGGACTTTGTTATTCCATTCACCAGCTTCGTGGGA
GCTCCTGGATTCGACTTTACGAGTGTTGGAGCGCTCCAAATCGTGGCCAA
CGTTGAAGGACTTCCCGAAGTTGATGCAGATATGTCTTTCTTGGGTATTA
CCGCCAACGTAGTTGGGGGAGTGGTTTTCTTTGACTGTGACCAGGACGGA
GTCGAGGGCTTTGGGGAAATTGGCTACCCTGGTGTCCAGGCTAATCTTTT
GGATATGGGCGGCAACATCCTTGCGTCTGCTATAACTGCAACCGACGGAA
GTTTCGCTATTGTCACGGGTCCAGGAACCTATCGGATTTGTTTGGTAGGC
TCTACCTTCAGCACTCCCACCGTGCCCTCAACCGGCTGCTCAGACTTCTT
TACTTTAGGTGCTAGCGAAGATCGCTTTGAGGATACTTTCGGTTGCTACG
TCCCTGTTGAAGTTACTGCTCCTGCTGGCGAAAGCCTTGACTGTACTGAG
TGCTTCACTGCCTCTAGTTCTTGCACTGGGGTCGCCACCGCTGTTGGCTG
TGACTCGAGTGTGACTGTAAGCTCGACTGACTCGATCGATACGGTCTGCA
CCGACACTTTCACTATAACGCGAACGTGGACTGCCACGGATGGTTTCTCT
TCCGACACTCAAGTGCAGCTCATCTCTGTAACTGATGACACTCCACCGAA
CTTCACCTCGTTCCCCAACACTTTCTCTGCTGAGTGTGGAGATTCTCTTG
ATCCAGCAAATACTGGTGGCACGCCCACAGCCAGCGATGACTGTAGCAAC
TTTCCAACGGTGAGCTATTTCGAT
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