mRNA_M-pyrifera_M_contig76150.17963.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76150.17963.1
Unique NamemRNA_M-pyrifera_M_contig76150.17963.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76150.17963.1 vs. uniprot
Match: A0A6G0X0S9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0S9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.030e-7
Identity = 36/118 (30.51%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:    1 IFAGFFLPFPDMAPGWHFLYWISPLHYALSSLVAPQYYCPEKDKDLEFDVQGPCGTMEVVMDGERTPAMRKDKFLKEFFG--ISYEYVSRDTAIIFAIAIFIICVKMIVLRNVRHQNR 348
            +F+GF +    ++ GW +LYWISPLHY L S++  QY   +  K L+  +    GT   + D           +++ FF    SY+ + R   +++AI  F++ V   ++  V H NR
Sbjct: 1269 LFSGFMISGNMLSKGWRWLYWISPLHYTLESIIMSQYKS-QTGKVLDSTL----GTQVFIKD-----------YVQGFFNDSFSYDQIGRALGLLWAIIAFVLLVNWRLMAKVNHMNR 1370
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BLAST of mRNA_M-pyrifera_M_contig76150.17963.1 vs. uniprot
Match: A0A6A5A3D2_9STRA (ABC2_membrane domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A3D2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.900e-5
Identity = 28/118 (23.73%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    1 IFAGFFLPFPDMAPGWHFLYWISPLHYALSSLVAPQYYCPEKDKDLEFDVQGPCGTMEVVMDGERTPAMRKDKFLKEFF--GISYEYVSRDTAIIFAIAIFIICVKMIVLRNVRHQNR 348
            +F+GF +   ++A GW +LYWISPLHY L +++  Q+             +   G +  ++ G++ P    +++++ +F    SY+ ++R   +++ I + +  + ++ +  V H  R
Sbjct:  144 VFSGFMIDGENLAKGWQWLYWISPLHYTLETVIMSQF-------------KSQFGLVADLVVGKQVPI---NQYVEGYFHGAFSYDNINRSLGLLWVINVVLQVLILLCMAKVNHMKR 245
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BLAST of mRNA_M-pyrifera_M_contig76150.17963.1 vs. uniprot
Match: A0A3L6V7E9_9STRA (ABC transporter domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V7E9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.120e-5
Identity = 28/118 (23.73%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    1 IFAGFFLPFPDMAPGWHFLYWISPLHYALSSLVAPQYYCPEKDKDLEFDVQGPCGTMEVVMDGERTPAMRKDKFLKEFF--GISYEYVSRDTAIIFAIAIFIICVKMIVLRNVRHQNR 348
            +F+GF +   ++A GW +LYWISPLHY L +++  Q+             +   G +  ++ G++ P    +++++ +F    SY+ ++R   +++ I + +  + ++ +  V H  R
Sbjct:  959 VFSGFMIDGENLAKGWQWLYWISPLHYTLETVIMSQF-------------KSQFGLVADLVVGKQVPI---NQYVEGYFHGAFSYDNINRSLGLLWVINVVLQVLILLCMAKVNHMKR 1060
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BLAST of mRNA_M-pyrifera_M_contig76150.17963.1 vs. uniprot
Match: A0A397AZL4_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AZL4_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.190e-5
Identity = 28/118 (23.73%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    1 IFAGFFLPFPDMAPGWHFLYWISPLHYALSSLVAPQYYCPEKDKDLEFDVQGPCGTMEVVMDGERTPAMRKDKFLKEFF--GISYEYVSRDTAIIFAIAIFIICVKMIVLRNVRHQNR 348
            +F+GF +   ++A GW +LYWISPLHY L +++  Q+             +   G +  ++ G++ P    +++++ +F    SY+ ++R   +++ I + +  + ++ +  V H  R
Sbjct: 1170 VFSGFMIDGENLAKGWQWLYWISPLHYTLETVIMSQF-------------KSQFGLVADLVVGKQVPI---NQYVEGYFHGAFSYDNINRSLGLLWVINVVLQVLILLCMAKVNHMKR 1271
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76150.17963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6G0X0S9_9STRA5.030e-730.51Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A5A3D2_9STRA4.900e-523.73ABC2_membrane domain-containing protein n=1 Tax=Ap... [more]
A0A3L6V7E9_9STRA7.120e-523.73ABC transporter domain-containing protein (Fragmen... [more]
A0A397AZL4_9STRA7.190e-523.73Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76150contigM-pyrifera_M_contig76150:6..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.9644606-CDS-M-pyrifera_M_contig76150:5..3561622816660.9644606-CDS-M-pyrifera_M_contig76150:5..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76150 6..356 +
1692278104.4776342-CDS-M-pyrifera_M_contig76150:5..3561692278104.4776342-CDS-M-pyrifera_M_contig76150:5..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76150 6..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76150.17963.1prot_M-pyrifera_M_contig76150.17963.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76150 6..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76150.17963.1

>prot_M-pyrifera_M_contig76150.17963.1 ID=prot_M-pyrifera_M_contig76150.17963.1|Name=mRNA_M-pyrifera_M_contig76150.17963.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
IFAGFFLPFPDMAPGWHFLYWISPLHYALSSLVAPQYYCPEKDKDLEFDV
QGPCGTMEVVMDGERTPAMRKDKFLKEFFGISYEYVSRDTAIIFAIAIFI
ICVKMIVLRNVRHQNR*
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mRNA from alignment at M-pyrifera_M_contig76150:6..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76150.17963.1 ID=mRNA_M-pyrifera_M_contig76150.17963.1|Name=mRNA_M-pyrifera_M_contig76150.17963.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig76150:6..356+ (Macrocystis pyrifera P11B4 male)
ATCTTTGCAGGATTCTTCCTCCCTTTTCCAGACATGGCCCCAGGATGGCA
CTTCCTCTACTGGATCTCCCCACTCCACTACGCGCTCTCCAGCCTCGTCG
CACCGCAGTACTACTGCCCAGAAAAAGACAAGGACCTCGAATTCGACGTA
CAGGGGCCCTGTGGCACCATGGAGGTCGTCATGGACGGGGAAAGGACGCC
AGCCATGCGAAAGGACAAGTTCCTCAAGGAGTTCTTCGGAATCTCGTACG
AATACGTCTCCAGAGACACCGCGATCATCTTCGCCATCGCCATCTTCATC
ATTTGCGTCAAAATGATAGTCCTCAGAAACGTCAGACACCAAAACCGGTA
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76150:6..356+

>mRNA_M-pyrifera_M_contig76150.17963.1 ID=mRNA_M-pyrifera_M_contig76150.17963.1|Name=mRNA_M-pyrifera_M_contig76150.17963.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig76150:6..356+ (Macrocystis pyrifera P11B4 male)
ATCTTTGCAGGATTCTTCCTCCCTTTTCCAGACATGGCCCCAGGATGGCA
CTTCCTCTACTGGATCTCCCCACTCCACTACGCGCTCTCCAGCCTCGTCG
CACCGCAGTACTACTGCCCAGAAAAAGACAAGGACCTCGAATTCGACGTA
CAGGGGCCCTGTGGCACCATGGAGGTCGTCATGGACGGGGAAAGGACGCC
AGCCATGCGAAAGGACAAGTTCCTCAAGGAGTTCTTCGGAATCTCGTACG
AATACGTCTCCAGAGACACCGCGATCATCTTCGCCATCGCCATCTTCATC
ATTTGCGTCAAAATGATAGTCCTCAGAAACGTCAGACACCAAAACCGGTA
GATCTTTGCAGGATTCTTCCTCCCTTTTCCAGACATGGCCCCAGGATGGC
ACTTCCTCTACTGGATCTCCCCACTCCACTACGCGCTCTCCAGCCTCGTC
GCACCGCAGTACTACTGCCCAGAAAAAGACAAGGACCTCGAATTCGACGT
ACAGGGGCCCTGTGGCACCATGGAGGTCGTCATGGACGGGGAAAGGACGC
CAGCCATGCGAAAGGACAAGTTCCTCAAGGAGTTCTTCGGAATCTCGTAC
GAATACGTCTCCAGAGACACCGCGATCATCTTCGCCATCGCCATCTTCAT
CATTTGCGTCAAAATGATAGTCCTCAGAAACGTCAGACACCAAAACCGGT
AG
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