mRNA_M-pyrifera_M_contig76146.17961.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76146.17961.1
Unique NamemRNA_M-pyrifera_M_contig76146.17961.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76146.17961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76146contigM-pyrifera_M_contig76146:386..1018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score75.1
Seed ortholog evalue4.4e-11
Seed eggNOG ortholog224719.Abm4_1219
Hectar predicted targeting categoryother localisation
EggNOG OGsarCOG12640@1,arCOG12640@2157
Best tax levelArchaea
Best eggNOG OGNA|NA|NA
Exons1
Model size633
Cds size633
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.8857358-CDS-M-pyrifera_M_contig76146:385..10181622816660.8857358-CDS-M-pyrifera_M_contig76146:385..1018Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76146 386..1018 +
1692278104.44279-CDS-M-pyrifera_M_contig76146:385..10181692278104.44279-CDS-M-pyrifera_M_contig76146:385..1018Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76146 386..1018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76146.17961.1prot_M-pyrifera_M_contig76146.17961.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76146 386..1018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76146.17961.1

>prot_M-pyrifera_M_contig76146.17961.1 ID=prot_M-pyrifera_M_contig76146.17961.1|Name=mRNA_M-pyrifera_M_contig76146.17961.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=211bp
KTIGALNDYYVLKGIEKVYNLNAYSPKENHLLDIDKGLVRISEDTECAIQ
VLGYIDKTKDVFTWGWSDQLNVPSGVKRAAGDLRAFGITYDIDDFTNETK
QLNGADISRIAFSSVGLCKADGLLFFPYQNGTIGVLVFGKTFPLCDESRV
NILRTMVEMRTPRRMRNHKTAVMAYCKEFSLNVAEDENVLVIDDRFGEVS
MTFDENGQIDG
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mRNA from alignment at M-pyrifera_M_contig76146:386..1018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76146.17961.1 ID=mRNA_M-pyrifera_M_contig76146.17961.1|Name=mRNA_M-pyrifera_M_contig76146.17961.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=633bp|location=Sequence derived from alignment at M-pyrifera_M_contig76146:386..1018+ (Macrocystis pyrifera P11B4 male)
AAGACCATTGGAGCGCTGAATGACTATTATGTTCTGAAGGGTATTGAGAA
GGTGTACAACTTGAATGCGTACAGCCCGAAAGAAAACCACTTGCTGGATA
TCGACAAAGGGCTTGTTCGTATAAGCGAGGACACTGAATGTGCGATTCAA
GTGCTTGGATACATCGACAAGACGAAGGATGTGTTTACGTGGGGATGGTC
GGATCAGTTGAATGTTCCGAGTGGAGTGAAACGTGCAGCTGGTGATCTGA
GGGCATTTGGGATTACGTACGACATTGATGACTTCACAAACGAGACGAAG
CAGCTGAATGGTGCTGACATTTCAAGAATTGCATTTTCCTCAGTCGGGCT
TTGCAAAGCTGATGGGCTCTTATTCTTTCCATATCAAAATGGGACAATCG
GAGTATTGGTGTTTGGAAAAACATTCCCATTGTGCGATGAGAGCAGGGTG
AACATATTGCGCACCATGGTTGAAATGCGCACGCCACGGAGAATGCGTAA
CCACAAGACGGCAGTGATGGCTTATTGCAAAGAGTTCTCGCTAAACGTTG
CAGAAGACGAAAATGTGCTGGTAATTGATGATCGGTTTGGAGAGGTAAGT
ATGACATTTGACGAAAATGGCCAGATTGATGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76146:386..1018+

>mRNA_M-pyrifera_M_contig76146.17961.1 ID=mRNA_M-pyrifera_M_contig76146.17961.1|Name=mRNA_M-pyrifera_M_contig76146.17961.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1266bp|location=Sequence derived from alignment at M-pyrifera_M_contig76146:386..1018+ (Macrocystis pyrifera P11B4 male)
AAGACCATTGGAGCGCTGAATGACTATTATGTTCTGAAGGGTATTGAGAA
GGTGTACAACTTGAATGCGTACAGCCCGAAAGAAAACCACTTGCTGGATA
TCGACAAAGGGCTTGTTCGTATAAGCGAGGACACTGAATGTGCGATTCAA
GTGCTTGGATACATCGACAAGACGAAGGATGTGTTTACGTGGGGATGGTC
GGATCAGTTGAATGTTCCGAGTGGAGTGAAACGTGCAGCTGGTGATCTGA
GGGCATTTGGGATTACGTACGACATTGATGACTTCACAAACGAGACGAAG
CAGCTGAATGGTGCTGACATTTCAAGAATTGCATTTTCCTCAGTCGGGCT
TTGCAAAGCTGATGGGCTCTTATTCTTTCCATATCAAAATGGGACAATCG
GAGTATTGGTGTTTGGAAAAACATTCCCATTGTGCGATGAGAGCAGGGTG
AACATATTGCGCACCATGGTTGAAATGCGCACGCCACGGAGAATGCGTAA
CCACAAGACGGCAGTGATGGCTTATTGCAAAGAGTTCTCGCTAAACGTTG
CAGAAGACGAAAATGTGCTGGTAATTGATGATCGGTTTGGAGAGGTAAGT
ATGACATTTGACGAAAATGGCCAGATTGATGGCAAGACCATTGGAGCGCT
GAATGACTATTATGTTCTGAAGGGTATTGAGAAGGTGTACAACTTGAATG
CGTACAGCCCGAAAGAAAACCACTTGCTGGATATCGACAAAGGGCTTGTT
CGTATAAGCGAGGACACTGAATGTGCGATTCAAGTGCTTGGATACATCGA
CAAGACGAAGGATGTGTTTACGTGGGGATGGTCGGATCAGTTGAATGTTC
CGAGTGGAGTGAAACGTGCAGCTGGTGATCTGAGGGCATTTGGGATTACG
TACGACATTGATGACTTCACAAACGAGACGAAGCAGCTGAATGGTGCTGA
CATTTCAAGAATTGCATTTTCCTCAGTCGGGCTTTGCAAAGCTGATGGGC
TCTTATTCTTTCCATATCAAAATGGGACAATCGGAGTATTGGTGTTTGGA
AAAACATTCCCATTGTGCGATGAGAGCAGGGTGAACATATTGCGCACCAT
GGTTGAAATGCGCACGCCACGGAGAATGCGTAACCACAAGACGGCAGTGA
TGGCTTATTGCAAAGAGTTCTCGCTAAACGTTGCAGAAGACGAAAATGTG
CTGGTAATTGATGATCGGTTTGGAGAGGTAAGTATGACATTTGACGAAAA
TGGCCAGATTGATGGC
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