Homology
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
D7FYI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI2_ECTSI)
HSP 1 Score: 116 bits (290), Expect = 8.580e-30
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1
Query: 1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
+ S GYVLLLSSKTKQWAADFKLNS ATAVTF+PDS+Y+LA+G D DVYKFD+RSRRCVLRFFNE
Sbjct: 141 IGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYVLASGADADVYKFDIRSRRCVLRFFNE 205
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
A0A6H5KQH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH1_9PHAE)
HSP 1 Score: 116 bits (290), Expect = 8.400e-29
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1
Query: 1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
+ S GYVLLLSSKTKQWAADFKLNS ATAVTF+PDS+Y+LA+G D DVYKFD+RSRRCVLRFFNE
Sbjct: 373 IGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYVLASGADADVYKFDIRSRRCVLRFFNE 437
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
A0A835Z2C0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C0_9STRA)
HSP 1 Score: 93.6 bits (231), Expect = 5.550e-21
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 4 ASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
AS+GY++L+S+KTKQWAADFKLN A+ F+PDS+YILA+G D +VYKFDVR RCV R +NE
Sbjct: 192 ASAGYIMLVSAKTKQWAADFKLNCSVEALVFSPDSRYILASGRDAEVYKFDVRHSRCVQRMYNE 255
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
A0A7S1CWG3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWG3_CYCTE)
HSP 1 Score: 83.6 bits (205), Expect = 1.770e-17
Identity = 35/65 (53.85%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
+ + GY++L+ +K+KQW AD K+N AV FTPDS+ +L++G DGDVY++D+R+RRCV RF NE
Sbjct: 153 VGNDGYIILVDAKSKQWMADLKMNGSVRAVAFTPDSECLLSSGSDGDVYRWDLRTRRCVERFSNE 217
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
B5Y3P6_PHATC (Anthranilate synthase. anthranilate synthetase. chorismate lyase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3P6_PHATC)
HSP 1 Score: 80.9 bits (198), Expect = 2.700e-16
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
+ + GY++L + KQW AD K++ A+TFTPD +YILA+G DG++Y++D+R+RRCV RF N+
Sbjct: 238 VGNDGYIILFDAHAKQWIADLKISGSVRAITFTPDGEYILASGSDGEIYRWDLRTRRCVERFTNQ 302
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
UPI0009E437CB (U3 small nucleolar RNA-associated protein 18 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E437CB)
HSP 1 Score: 78.2 bits (191), Expect = 1.160e-15
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNEVCM 204
+ ++GY++LLSSKTKQW + K+NS +AVTF D + AGGDG+VY +D+ +RRCV +F +E C+
Sbjct: 119 VGTNGYLILLSSKTKQWIGNLKMNSSVSAVTFNADGSRMFTAGGDGEVYVWDMNTRRCVHKFRDEGCL 186
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
A0A7S3QBK5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBK5_9STRA)
HSP 1 Score: 77.0 bits (188), Expect = 6.920e-15
Identity = 30/65 (46.15%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
+ + GY++L+ +K+K W ADFK+N A AV+F+P +I+++G DGDVY++D+RS++CV +F N+
Sbjct: 425 IGNDGYIILVEAKSKMWVADFKMNGSARAVSFSPCGDFIISSGSDGDVYRWDLRSKKCVDKFQNQ 489
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
W7T4E2_9STRA (U3 small nucleolar rna-associated protein 18 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4E2_9STRA)
HSP 1 Score: 77.0 bits (188), Expect = 6.920e-15
Identity = 31/61 (50.82%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 13 GYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
GYV+L+ +++KQWA +FK+N A A+ F+ D ++++A+GGD VY++D+RSRRC+ RF NE
Sbjct: 414 GYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNE 474
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
A0A7S2GVY7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVY7_9STRA)
HSP 1 Score: 74.3 bits (181), Expect = 6.050e-14
Identity = 30/64 (46.88%), Postives = 50/64 (78.12%), Query Frame = 1
Query: 4 ASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNE 195
A++GYV+L ++TKQW+ +FK+N A +++++P S+Y+LA+GGD +VY +D+R RCV + NE
Sbjct: 304 ANNGYVVLADARTKQWSQEFKINGTARSLSWSPCSRYLLASGGDAEVYTYDLRRSRCVSHWLNE 367
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Match:
A0A0L0H5M5_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H5M5_SPIPD)
HSP 1 Score: 73.6 bits (179), Expect = 1.150e-13
Identity = 28/68 (41.18%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 1 LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYKFDVRSRRCVLRFFNEVCM 204
L G+++L+S TKQW A K+N TA+ F+ D K++ + GGDG+VY++D+ SR+C+ +F+++ C+
Sbjct: 432 LGRDGHIILVSKDTKQWVATMKMNGSVTAIDFSKDGKFLYSFGGDGEVYQWDLGSRKCIHKFYDDGCV 499
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76093.17947.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90 )
Total hits: 25
0 1 Expect = 8.58e-30 / Id = 83.08 Expect = 8.40e-29 / Id = 83.08 Expect = 5.55e-21 / Id = 65.63 Expect = 1.77e-17 / Id = 53.85 Expect = 2.70e-16 / Id = 49.23 Expect = 1.16e-15 / Id = 50.00 Expect = 6.92e-15 / Id = 46.15 Expect = 6.92e-15 / Id = 50.82 Expect = 6.05e-14 / Id = 46.88 Expect = 1.15e-13 / Id = 41.18 Sequence D7FYI2_ECTSI A0A6H5KQH1_9PHAE A0A835Z2C0_9STRA A0A7S1CWG3_CYCTE B5Y3P6_PHATC UPI0009E437CB A0A7S3QBK5_9STRA W7T4E2_9STRA A0A7S2GVY7_9STRA A0A0L0H5M5_SPIPD
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 117.5
Seed ortholog evalue 2.5e-24
Seed eggNOG ortholog 2880.D7FYI2
Preferred name UTP18
KEGG rclass RC00003,RC00060,RC00181,RC00496
KEGG ko ko:K11422,ko:K14553
KEGG Reaction R03875,R03938,R04866,R04867
KEGG Pathway ko00310,ko03008,map00310,map03008
Hectar predicted targeting category other localisation
GOs GO:0000003,GO:0000151,GO:0000462,GO:0001674,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007405,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016072,GO:0017145,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0030154,GO:0030490,GO:0030532,GO:0030684,GO:0030686,GO:0031090,GO:0031461,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042078,GO:0042254,GO:0042274,GO:0042585,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0046483,GO:0048132,GO:0048468,GO:0048477,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051301,GO:0051704,GO:0061351,GO:0070013,GO:0071704,GO:0071840,GO:0072089,GO:0080008,GO:0090304,GO:0098722,GO:0098728,GO:0120114,GO:1901360,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc. maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGs KOG2055@1,KOG2055@2759
EC 2.1.1.43
COG Functional cat. Q
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko00001,ko01000,ko03009,ko03036
Exons 1
Model size 204
Cds size 204
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816660.0158548-CDS-M-pyrifera_M_contig76093:328..532 1622816660.0158548-CDS-M-pyrifera_M_contig76093:328..532 Macrocystis pyrifera P11B4 male CDS M-pyrifera_M_contig76093 329..532 -
1692278103.9724436-CDS-M-pyrifera_M_contig76093:328..532 1692278103.9724436-CDS-M-pyrifera_M_contig76093:328..532 Macrocystis pyrifera P11B4 male CDS M-pyrifera_M_contig76093 329..532 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig76093.17947.1
>prot_M-pyrifera_M_contig76093.17947.1 ID=prot_M-pyrifera_M_contig76093.17947.1|Name=mRNA_M-pyrifera_M_contig76093.17947.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
LASSGYVLLLSSKTKQWAADFKLNSPATAVTFTPDSKYILAAGGDGDVYK FDVRSRRCVLRFFNEVCM back to top mRNA from alignment at M-pyrifera_M_contig76093:329..532-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76093.17947.1 ID=mRNA_M-pyrifera_M_contig76093.17947.1|Name=mRNA_M-pyrifera_M_contig76093.17947.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig76093:329..532- (Macrocystis pyrifera P11B4 male)CTCGCCTCTTCAGGCTACGTCCTCCTTCTGTCGAGCAAGACCAAGCAGTG
GGCGGCCGACTTCAAGCTTAACTCGCCAGCTACTGCGGTGACCTTCACAC
CCGACAGCAAGTACATCTTGGCAGCAGGCGGCGACGGCGACGTATACAAG
TTCGACGTAAGGTCCCGCCGCTGCGTGCTTCGGTTCTTCAACGAGGTATG
CATG back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig76093:329..532-
>mRNA_M-pyrifera_M_contig76093.17947.1 ID=mRNA_M-pyrifera_M_contig76093.17947.1|Name=mRNA_M-pyrifera_M_contig76093.17947.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig76093:329..532- (Macrocystis pyrifera P11B4 male) CTCGCCTCTTCAGGCTACGTCCTCCTTCTGTCGAGCAAGACCAAGCAGTG GGCGGCCGACTTCAAGCTTAACTCGCCAGCTACTGCGGTGACCTTCACAC CCGACAGCAAGTACATCTTGGCAGCAGGCGGCGACGGCGACGTATACAAG TTCGACGTAAGGTCCCGCCGCTGCGTGCTTCGGTTCTTCAACGAGGTATG CATGCTCGCCTCTTCAGGCTACGTCCTCCTTCTGTCGAGCAAGACCAAGC AGTGGGCGGCCGACTTCAAGCTTAACTCGCCAGCTACTGCGGTGACCTTC ACACCCGACAGCAAGTACATCTTGGCAGCAGGCGGCGACGGCGACGTATA CAAGTTCGACGTAAGGTCCCGCCGCTGCGTGCTTCGGTTCTTCAACGAGG TATGCATG back to top