mRNA_M-pyrifera_M_contig76020.17932.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76020.17932.1
Unique NamemRNA_M-pyrifera_M_contig76020.17932.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A5A8E0I5_CAFRO (J domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E0I5_CAFRO)

HSP 1 Score: 129 bits (325), Expect = 3.170e-32
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGDDTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLPLFLW 324
            YDPF ILGIE +AT REIKKAY K SL +HPD+  G++ MF HIT AY ALTDE AKEN+RLYGNP+G+Q +   +GLP+FL D+ N   V+ GY++A  V +P   +
Sbjct:  102 YDPFAILGIEDTATDREIKKAYRKLSLKYHPDKRQGNEDMFVHITKAYQALTDEVAKENFRLYGNPDGKQAIGFGIGLPAFLTDEANRPFVLAGYIVALVVGVPFVFY 209          
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A5A8CRI9_CAFRO (J domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CRI9_CAFRO)

HSP 1 Score: 129 bits (325), Expect = 3.180e-32
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGDDTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLPLFLW 324
            YDPF ILGIE +AT REIKKAY K SL +HPD+  G++ MF HIT AY ALTDE AKEN+RLYGNP+G+Q +   +GLP+FL D+ N   V+ GY++A  V +P   +
Sbjct:  102 YDPFAILGIEDTATDREIKKAYRKLSLKYHPDKRQGNEDMFVHITKAYQALTDEVAKENFRLYGNPDGKQAIGFGIGLPAFLTDEANRPFVLAGYIVALVVGVPFVFY 209          
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A7S2NSV6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSV6_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.800e-31
Identity = 63/138 (45.65%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGD---DTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLPLFLWKMRRSPPQDVVSKEVKKETYLWLSVAM 405
            +DPF ILGI+  A  + IKKAY  KSL +HPD++ GD   +TMF ++  AY ALTD  AKENY+LYGNP+G+Q +EVS+GLP+FLLD+ N  L++  Y+     ++P ++WK   S    +    +  +TY W   A+
Sbjct:  105 FDPFTILGIDSGADVKVIKKAYRSKSLQYHPDKNPGDKLAETMFMNVAKAYEALTDPTAKENYKLYGNPDGKQSMEVSIGLPTFLLDEHNKFLILLIYLTLMVGVVPYWVWKYY-SHSSKLGENNIMYDTYSWFYHAL 241          
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A1Z5KQ30_FISSO (Translocation protein SEC63 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ30_FISSO)

HSP 1 Score: 125 bits (314), Expect = 7.190e-31
Identity = 65/138 (47.10%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGD---DTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLPLFLWKMRRSPPQDVVSKEVKKETYLWLSVAM 405
            +DPF IL I+  A  + IKKAY   SL +HPD++ GD   + MF  ++ AY ALTDE A+EN+  YGNP+G+Q LEVS+GLPSFLLD +N  LV+  Y++   VL+P F+W+   S       K V  +TY W   A+
Sbjct:  104 FDPFSILQIDAGADNKTIKKAYRSLSLKYHPDKNPGDRAAEAMFMMVSKAYEALTDETARENWEKYGNPDGKQSLEVSIGLPSFLLDSKNRNLVLVAYLLFMVVLIPYFVWRYY-SDSSKYGEKNVMYDTYSWFHHAL 240          
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A6S9GXF9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9GXF9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.380e-30
Identity = 63/133 (47.37%), Postives = 87/133 (65.41%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGD---DTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLPLFLWKMRRSPPQDVVSKEVKKETYLW 390
            +DPF ILGI+  A T+EIKKAY K SL++HPD++  +   + MF  +  AY ALTD  AKENY  YGNP+G+Q LEVS+GLPS+LLD +N   V+  Y++   V++P  +W+   S       K+V  +TY W
Sbjct:  105 FDPFHILGIDTGADTKEIKKAYKKMSLMYHPDKNPNNPSAEAMFMMVAKAYEALTDATAKENYEKYGNPDGKQSLEVSIGLPSWLLDTDNRNFVLMAYLLIMVVVIPFSVWRYY-SDSSKFGEKDVMYDTYSW 236          
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A7S0CFH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFH9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.230e-30
Identity = 61/133 (45.86%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGD---DTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLPLFLWKMRRSPPQDVVSKEVKKETYLW 390
            +DPF IL I+ +A  +EIKKAY KKSL++HPD++ G+   + MF  +  AY ALTDE A++N+  YGNP+G+Q LEVS+GLP+ LLD  N  +++  Y++   VL+PL ++K   S       K+V  +TY W
Sbjct:   80 FDPFSILEIDSNAEKKEIKKAYKKKSLMYHPDKNPGNSAAEAMFIKVAKAYEALTDETARDNWEKYGNPDGKQNLEVSIGLPTLLLDTSNRNIILLVYLLIMVVLIPLAVYKYY-SDSSKYGEKDVMYDTYSW 211          
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A7S2XNA0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNA0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.990e-28
Identity = 61/133 (45.86%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGD---DTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLPLFLWKMRRSPPQDVVSKEVKKETYLW 390
            +DPF IL ++++A  + IKKAY KKSL++HPD++  +   + MF  +  AY ALTDEE+K NY  YGNP+G+Q LEVS+GLPSFLL+  N  LV+  Y+I    ++P  +W    S       K+V  +TY W
Sbjct:  105 FDPFSILDVDQNAELKAIKKAYKKKSLIYHPDKNPNNPQAEAMFMMVAKAYEALTDEESKANYEKYGNPDGKQSLEVSIGLPSFLLEAGNRKLVLITYLIFMVGVIPFAVWTYY-SDSSKFGEKDVMYDTYSW 236          
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A7S2YT42_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YT42_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.670e-28
Identity = 58/138 (42.03%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGD---DTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLPLFLWKMRRSPPQDVVSKEVKKETYLWLSVAM 405
            +DP+ IL I+  A  + IKKAY K SL++HPD++ GD   +  F  ++ AY ALTDE A+ENY  +GNP+G+Q ++VS+GLP+FLLD +N  LV+ GY++    ++P  +W    S       K+V  +TY W   ++
Sbjct:  103 FDPYSILEIDHGADNKAIKKAYRKLSLIYHPDKNPGDRAAEAKFVMVSKAYTALTDETARENYEKFGNPDGQQNMQVSIGLPAFLLDSDNRNLVLLGYLVIMVGVIPYAVWTYY-SDSSKYGEKDVMYDTYAWFHYSL 239          
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A7R9UDC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.420e-28
Identity = 55/110 (50.00%), Postives = 83/110 (75.45%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGD---DTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLPLFL 321
            +DPF ILG++ +AT  +IKKAY K SL++HPD++ G+   + MF  +  AY ALTD  AKEN+  YGNP+G+Q LE+S+GLPS+L+DK+N+ L++  Y++A  V++PL +
Sbjct:  104 FDPFAILGVDPAATEAQIKKAYRKMSLIYHPDKNPGNKQAEQMFMLVAKAYGALTDPVAKENWEKYGNPDGKQSLELSVGLPSWLIDKDNHSLILVMYLVALVVVIPLIV 213          
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Match: A0A443SDU5_9ACAR (Translocation protein SEC63-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SDU5_9ACAR)

HSP 1 Score: 114 bits (284), Expect = 1.020e-26
Identity = 55/104 (52.88%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGDDTMFKHITDAYNALTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFGVLLP 312
            +DPF+ILGI+  ++T EIKKAY K SLLHHPD+ GGD+  F  I+ AY ALTDEEA++N+ +YGNP+G       + LPS++++KEN+ILV+  Y + F + LP
Sbjct:  102 WDPFEILGIDPGSSTAEIKKAYRKLSLLHHPDK-GGDERKFLKISKAYAALTDEEARKNWEMYGNPDGPGATSFGIALPSWIVEKENSILVLGLYALVFMIALP 204          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76020.17932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E0I5_CAFRO3.170e-3257.41J domain-containing protein n=2 Tax=Cafeteria roen... [more]
A0A5A8CRI9_CAFRO3.180e-3257.41J domain-containing protein n=4 Tax=Sar TaxID=2698... [more]
A0A7S2NSV6_9STRA3.800e-3145.65Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5KQ30_FISSO7.190e-3147.10Translocation protein SEC63 n=2 Tax=Fistulifera so... [more]
A0A6S9GXF9_9STRA1.380e-3047.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0CFH9_9STRA2.230e-3045.86Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2XNA0_9STRA2.990e-2845.86Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2YT42_9STRA3.670e-2842.03Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9UDC6_9STRA4.420e-2850.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A443SDU5_9ACAR1.020e-2652.88Translocation protein SEC63-like protein n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76020contigM-pyrifera_M_contig76020:3..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue9.9e-25
Seed eggNOG ortholog4792.ETI34427
KEGG koko:K09540
KEGG TC3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,map03060,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141
EggNOG free text desc.posttranslational protein targeting to membrane, translocation
EggNOG OGs3QDKN@4776,COG1204@1,COG5407@1,KOG0721@2759,KOG0951@2759
COG Functional cat.U
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko03110
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.3074584-CDS-M-pyrifera_M_contig76020:2..4071622816659.3074584-CDS-M-pyrifera_M_contig76020:2..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76020 3..407 +
1692278103.6460314-CDS-M-pyrifera_M_contig76020:2..4071692278103.6460314-CDS-M-pyrifera_M_contig76020:2..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76020 3..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76020.17932.1prot_M-pyrifera_M_contig76020.17932.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76020 3..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76020.17932.1

>prot_M-pyrifera_M_contig76020.17932.1 ID=prot_M-pyrifera_M_contig76020.17932.1|Name=mRNA_M-pyrifera_M_contig76020.17932.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
YDPFKILGIEKSATTREIKKAYHKKSLLHHPDRHGGDDTMFKHITDAYNA
LTDEEAKENYRLYGNPNGRQKLEVSMGLPSFLLDKENNILVITGYVIAFG
VLLPLFLWKMRRSPPQDVVSKEVKKETYLWLSVAM
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mRNA from alignment at M-pyrifera_M_contig76020:3..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76020.17932.1 ID=mRNA_M-pyrifera_M_contig76020.17932.1|Name=mRNA_M-pyrifera_M_contig76020.17932.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig76020:3..407+ (Macrocystis pyrifera P11B4 male)
TACGACCCGTTCAAGATCTTGGGGATTGAAAAGAGTGCTACTACGCGTGA GATTAAGAAAGCGTACCACAAAAAGTCACTGTTGCACCATCCTGATCGTC ATGGTGGAGATGACACAATGTTTAAGCACATTACAGATGCGTACAATGCT CTCACTGATGAAGAAGCGAAGGAGAACTACAGATTGTATGGGAATCCGAA TGGGCGCCAAAAGTTGGAGGTCTCGATGGGATTGCCTTCATTTCTTCTGG ACAAGGAAAACAACATCCTCGTCATCACGGGTTATGTCATCGCATTTGGG GTCCTCCTCCCTCTCTTCTTGTGGAAAATGCGACGTAGTCCCCCACAGGA TGTCGTGAGCAAAGAAGTGAAGAAGGAGACATACTTGTGGCTGAGCGTCG CCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76020:3..407+

>mRNA_M-pyrifera_M_contig76020.17932.1 ID=mRNA_M-pyrifera_M_contig76020.17932.1|Name=mRNA_M-pyrifera_M_contig76020.17932.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig76020:3..407+ (Macrocystis pyrifera P11B4 male)
TACGACCCGTTCAAGATCTTGGGGATTGAAAAGAGTGCTACTACGCGTGA
GATTAAGAAAGCGTACCACAAAAAGTCACTGTTGCACCATCCTGATCGTC
ATGGTGGAGATGACACAATGTTTAAGCACATTACAGATGCGTACAATGCT
CTCACTGATGAAGAAGCGAAGGAGAACTACAGATTGTATGGGAATCCGAA
TGGGCGCCAAAAGTTGGAGGTCTCGATGGGATTGCCTTCATTTCTTCTGG
ACAAGGAAAACAACATCCTCGTCATCACGGGTTATGTCATCGCATTTGGG
GTCCTCCTCCCTCTCTTCTTGTGGAAAATGCGACGTAGTCCCCCACAGGA
TGTCGTGAGCAAAGAAGTGAAGAAGGAGACATACTTGTGGCTGAGCGTCG
CCATGTACGACCCGTTCAAGATCTTGGGGATTGAAAAGAGTGCTACTACG
CGTGAGATTAAGAAAGCGTACCACAAAAAGTCACTGTTGCACCATCCTGA
TCGTCATGGTGGAGATGACACAATGTTTAAGCACATTACAGATGCGTACA
ATGCTCTCACTGATGAAGAAGCGAAGGAGAACTACAGATTGTATGGGAAT
CCGAATGGGCGCCAAAAGTTGGAGGTCTCGATGGGATTGCCTTCATTTCT
TCTGGACAAGGAAAACAACATCCTCGTCATCACGGGTTATGTCATCGCAT
TTGGGGTCCTCCTCCCTCTCTTCTTGTGGAAAATGCGACGTAGTCCCCCA
CAGGATGTCGTGAGCAAAGAAGTGAAGAAGGAGACATACTTGTGGCTGAG
CGTCGCCATG
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