mRNA_M-pyrifera_M_contig75963.17922.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75963.17922.1
Unique NamemRNA_M-pyrifera_M_contig75963.17922.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75963.17922.1 vs. uniprot
Match: A0A7Y2IJA3_9ACTN (LytR C-terminal domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IJA3_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 1.990e-14
Identity = 66/169 (39.05%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    1 MTAGAHDAGGGFSRSAGTNAARGVMVIVAAVAVGLLLMFRGIND-----SGDDTAAESTE---APAETGGEGQDPAGAGDTASTTVPTDDASTETTSTTVSAPPRDPSEVKVLVLNGTDADNRTAGVAGAGTDVLKPSNYVVLEPKDADVNGPSAVFYTEGYLAEANAV 483
            M  GAHDAGGGF +S GT+A RGV VI+AAVAVG +LM+ G +D     S DD+A  +T+   A                  ST  P+ +         V+ P     +VKVLVLN   A N+  G+AG GT +++ + YV L+  DA  + P+ + Y   Y A+A AV
Sbjct:    1 MNTGAHDAGGGFGQSVGTSAGRGVAVILAAVAVGAILMWLGYSDQTVDASSDDSAQTTTDDGAAXXXXXXXXXXXXXXXXVTSTAPPSTEXXXXXXPPAVARPA---DQVKVLVLNA--AVNKR-GIAGRGTAIVEQAGYVTLKAGDAKKDQPTEIQYAPDYEADAIAV 163          
BLAST of mRNA_M-pyrifera_M_contig75963.17922.1 vs. uniprot
Match: A0A351IU03_9ACTN (LytR_C domain-containing protein n=3 Tax=Acidimicrobiia TaxID=84992 RepID=A0A351IU03_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 1.380e-12
Identity = 62/174 (35.63%), Postives = 89/174 (51.15%), Query Frame = 1
Query:    1 MTAGAHDAGGGFSRSAGTNAARGVMVIVAAVAVGLLLMFRGINDS---GDDTAAESTE--APAETGGEGQDPA--------GAGDTASTTVPTDDASTETTSTTVSAPPRDPSEVKVLVLNGTDADNRTAGVAGAGTDVLKPSNYVVLEPKDADVNGPSAVFYTEGYLAEANAV 483
            M AGA   GGG + S      R  +++  AVA+GLL++++G++DS    D  A   T+  A A++G  G DPA        G    A    PT  A T T +   + P  DP+EVKVLV NG+      +G AG  TD+L P  + +  P +AD  G + V+Y   Y A+A  +
Sbjct:    1 MNAGAR--GGGLAPSNAAAMPRAALLVGVAVAIGLLMLWKGLDDSPLAADRQAPALTDDVAGADSGTGGADPAVVTTEPVGGEPADADVVTPTSAAPTTTEALFPTTPTHDPNEVKVLVANGSGV----SGAAGKVTDMLSPLGWTMESPANADKTGTTRVYYRTEYHADARKI 168          
BLAST of mRNA_M-pyrifera_M_contig75963.17922.1 vs. uniprot
Match: A0A800LR27_9ACTN (LytR family transcriptional regulator n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800LR27_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 4.650e-11
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = 1
Query:    1 MTAGAHDAGGGFSRSAGTNAARGVMVIVAAVAVGLLLMFRGINDSG-------DDTAAESTE-----------APAETGGEGQDPAGAGDTASTTVPTDDASTETTSTTVSAPPRDPSEVKVLVLNGTDADNRTAGVAGAGTDVLKPSNYVVLEPKDADVNGPSAVFYTEGYLAEA 474
            M+ G    GGG   S    A RGV++IV AVA+G+LL+++G+  S        ++TA  +TE           AP ETG +G+             P D  +T TT   V+  P  P+EV VLV NG     R +  A + TD + P+ Y +L P +ADV   + +FY  G+L EA
Sbjct:    1 MSNGRRSKGGGLGPSNAAAAPRGVLLIVVAVALGVLLLWKGLGASEFAVAPTPEETATTTTEGVTTDTTDGPEAPTETGIDGE-------------PLD--TTTTTIFPVATLP--PNEVTVLVANGA----RISRAATSVTDRITPAGYTLLAPANADVTTQTTIFYRSGFLNEA 155          
BLAST of mRNA_M-pyrifera_M_contig75963.17922.1 vs. uniprot
Match: A0A381VUC8_9ZZZZ (LytR_C domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381VUC8_9ZZZZ)

HSP 1 Score: 58.5 bits (140), Expect = 1.890e-7
Identity = 51/176 (28.98%), Postives = 79/176 (44.89%), Query Frame = 1
Query:   25 GGGFSRSAGTNAARGVMVIVAAVAVGLLLMFRGINDSG--------------DDTAAESTEAPAET---------GGEGQDPAGAGDTASTTVPTDDASTETTSTTVSAPPRDPSEVKVLVLNGTDADNRTAGVAGAGTDVLKPSNYVVLEPKDADVNGPSAVFYTEGYLAEANAV 483
            GGG   S    A R  ++I  AV +GL+L+++G++D+               DD +A  TE  + T         GGE + P           PT   +  TT      P   P+EVKVLV NG+      +G AG  TD+L P  + +  P +A+    + ++Y   Y+A+A  +
Sbjct:    5 GGGLGPSNAAAAPRAFLLIAVAVVLGLVLLWKGLDDTPGLRPLVDGGAEAAVDDGSAGGTEGVSGTITPTSTQAVGGEAEPP-----------PTTTVAPTTTQELFPMPTHAPNEVKVLVANGSGV----SGAAGKVTDLLSPRGWAMESPANAEKASATRIYYRTEYVADAKVI 165          
BLAST of mRNA_M-pyrifera_M_contig75963.17922.1 vs. uniprot
Match: A0A2E8BH54_9ACTN (LytR_C domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8BH54_9ACTN)

HSP 1 Score: 58.5 bits (140), Expect = 1.910e-7
Identity = 51/160 (31.87%), Postives = 76/160 (47.50%), Query Frame = 1
Query:   31 GFSRSAGTNAARGVMVIVAAVAVGLLLMFRGINDSGDDTAAESTEAPAETGGEGQDPAGAGDTAS---------TTVPTDDASTETTSTTVSAPPRDPSEVKVLVLNGTDADNRTAGVAGAGTDVLKPSNYVVLEPKDADVNGPSAVFYTEGYLAEANAV 483
            G   S  + A R  ++I  A+ +GL+L+++ + DS   T A S  A  E   +  +    GDT +           V T+     TT++    P R PS+VKVLV NG+       G AGA TD+L P  Y +  P +A+    S +FY  G+  +A  V
Sbjct:   11 GLGPSNPSAAPRAFLLITVALILGLVLLWKAV-DSDVGTVAVSDSAAVEGADQVDEIPDTGDTGAPVDEVAGTDAVVTTEPVVATTTTSAPLFPSRSPSDVKVLVANGSGI----GGAAGAVTDILNPRGYALESPANANRTDVSGIFYRTGFADDARMV 165          
BLAST of mRNA_M-pyrifera_M_contig75963.17922.1 vs. uniprot
Match: A0A2E0ZPP3_9ACTN (LytR_C domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0ZPP3_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 2.230e-7
Identity = 52/163 (31.90%), Postives = 74/163 (45.40%), Query Frame = 1
Query:   25 GGGFSRSAGTNAARGVMVIVAAVAVGLLLMFRGINDSGDDTAAESTEAPAETGGEGQDPAGA----------GDTASTTVPTDDASTETTSTTVSAPPRDPSEVKVLVLNGTDADNRTAGVAGAGTDVLKPSNYVVLEPKDADVNGPSAVFYTEGYLAEANAV 483
            GGG   S G  A R +     AV +G  L+++G++D  D  + +       T G+G    G           G T ST  PT           ++ PP   SEV+VLV NG+     TA  AG+ T++L P  Y  L P +A     + +F+  G +AEA AV
Sbjct:    7 GGGLGPSNGAAAPRALXXXXXAVLLGAALLWKGLDDGTDLVSDQPVPTTTATTGDGTPDDGXXXXXXXXXXXGTTTSTLFPT-----------ITEPP---SEVQVLVANGSG----TARAAGSVTELLVPKGYATLAPANAQPTDSTMIFFRPGMVAEARAV 151          
BLAST of mRNA_M-pyrifera_M_contig75963.17922.1 vs. uniprot
Match: A0A7K1Z8G2_9ACTN (LytR family transcriptional regulator n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z8G2_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 1.680e-6
Identity = 58/161 (36.02%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   34 FSRSAGTNAARGVMVIVAAVAVGLLLMFRG---------INDSGDDTAAESTEAPAETGGEGQDPAGAGDTASTTVPTDDASTETTSTTVSAPPRDPSEVKVLVLNGTDADNRTAGVAGAGTDVLKPSNYVVLEPKDADVNGP--SAVFYTEGYLAEANAV 483
            F++S  T AARG ++IV A+ +G+LL+++G         + D  D+T   + E  A     G+DP    DT +T  PT       T+  V   P  P+ VKV VLNG        G+AGA  D L  + YV  E  +AD      S V+YT GY  EA  V
Sbjct:   14 FTKSTATAAARGGILIVIAIVIGVLLLWQGFDSDEPITTVEDETDETGDNAEEEEATPTTAGEDPEEV-DTPTTAAPT-------TAAPVVVDP--PNSVKVAVLNG----RGEPGLAGARKDHLTTAGYVA-EGFNADTFDKEFSRVYYTPGYEDEAELV 159          
BLAST of mRNA_M-pyrifera_M_contig75963.17922.1 vs. uniprot
Match: A0A381PL86_9ZZZZ (LytR_C domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381PL86_9ZZZZ)

HSP 1 Score: 50.4 bits (119), Expect = 7.570e-5
Identity = 31/75 (41.33%), Postives = 41/75 (54.67%), Query Frame = 1
Query:  259 TTSTTVSAPPRDPSEVKVLVLNGTDADNRTAGVAGAGTDVLKPSNYVVLEPKDADVNGPSAVFYTEGYLAEANAV 483
            TTST        PSEV+VLV NG+     TA  AG+ T++L P  Y  L P +A     + +F+  G +AEA AV
Sbjct:   30 TTSTLFPTITEPPSEVQVLVANGSG----TARAAGSVTELLVPKGYATLAPANAQPTDSTMIFFRPGMVAEARAV 100          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75963.17922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7Y2IJA3_9ACTN1.990e-1439.05LytR C-terminal domain-containing protein n=1 Tax=... [more]
A0A351IU03_9ACTN1.380e-1235.63LytR_C domain-containing protein n=3 Tax=Acidimicr... [more]
A0A800LR27_9ACTN4.650e-1135.23LytR family transcriptional regulator n=1 Tax=Acid... [more]
A0A381VUC8_9ZZZZ1.890e-728.98LytR_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A2E8BH54_9ACTN1.910e-731.88LytR_C domain-containing protein n=1 Tax=Acidimicr... [more]
A0A2E0ZPP3_9ACTN2.230e-731.90LytR_C domain-containing protein n=1 Tax=Acidimicr... [more]
A0A7K1Z8G2_9ACTN1.680e-636.02LytR family transcriptional regulator n=2 Tax=Acid... [more]
A0A381PL86_9ZZZZ7.570e-541.33LytR_C domain-containing protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75963contigM-pyrifera_M_contig75963:556..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size483
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816658.853863-CDS-M-pyrifera_M_contig75963:555..10381622816658.853863-CDS-M-pyrifera_M_contig75963:555..1038Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75963 556..1038 +
1692278103.3883374-CDS-M-pyrifera_M_contig75963:555..10381692278103.3883374-CDS-M-pyrifera_M_contig75963:555..1038Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75963 556..1038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75963.17922.1prot_M-pyrifera_M_contig75963.17922.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75963 556..1038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75963.17922.1

>prot_M-pyrifera_M_contig75963.17922.1 ID=prot_M-pyrifera_M_contig75963.17922.1|Name=mRNA_M-pyrifera_M_contig75963.17922.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MTAGAHDAGGGFSRSAGTNAARGVMVIVAAVAVGLLLMFRGINDSGDDTA
AESTEAPAETGGEGQDPAGAGDTASTTVPTDDASTETTSTTVSAPPRDPS
EVKVLVLNGTDADNRTAGVAGAGTDVLKPSNYVVLEPKDADVNGPSAVFY
TEGYLAEANAV
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mRNA from alignment at M-pyrifera_M_contig75963:556..1038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75963.17922.1 ID=mRNA_M-pyrifera_M_contig75963.17922.1|Name=mRNA_M-pyrifera_M_contig75963.17922.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig75963:556..1038+ (Macrocystis pyrifera P11B4 male)
ATGACTGCAGGCGCACATGATGCAGGCGGCGGATTCAGCCGGTCGGCCGG AACCAACGCGGCACGCGGGGTCATGGTGATCGTCGCGGCCGTCGCCGTCG GACTGTTGCTGATGTTCCGAGGGATCAACGATTCCGGCGACGACACCGCA GCCGAATCCACCGAAGCCCCGGCCGAGACCGGCGGCGAAGGCCAAGATCC CGCCGGAGCAGGCGACACCGCGTCCACCACCGTCCCGACCGACGACGCGT CGACCGAGACCACCTCCACCACGGTCTCGGCTCCGCCCCGTGACCCGAGC GAGGTCAAGGTGTTGGTGCTCAACGGCACCGATGCCGACAACCGCACCGC CGGCGTGGCCGGTGCCGGCACCGACGTGCTCAAGCCGTCGAACTATGTCG TGCTCGAGCCGAAGGATGCCGACGTCAACGGACCGTCTGCGGTGTTCTAC ACCGAGGGGTATCTGGCCGAGGCCAACGCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75963:556..1038+

>mRNA_M-pyrifera_M_contig75963.17922.1 ID=mRNA_M-pyrifera_M_contig75963.17922.1|Name=mRNA_M-pyrifera_M_contig75963.17922.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig75963:556..1038+ (Macrocystis pyrifera P11B4 male)
ATGACTGCAGGCGCACATGATGCAGGCGGCGGATTCAGCCGGTCGGCCGG
AACCAACGCGGCACGCGGGGTCATGGTGATCGTCGCGGCCGTCGCCGTCG
GACTGTTGCTGATGTTCCGAGGGATCAACGATTCCGGCGACGACACCGCA
GCCGAATCCACCGAAGCCCCGGCCGAGACCGGCGGCGAAGGCCAAGATCC
CGCCGGAGCAGGCGACACCGCGTCCACCACCGTCCCGACCGACGACGCGT
CGACCGAGACCACCTCCACCACGGTCTCGGCTCCGCCCCGTGACCCGAGC
GAGGTCAAGGTGTTGGTGCTCAACGGCACCGATGCCGACAACCGCACCGC
CGGCGTGGCCGGTGCCGGCACCGACGTGCTCAAGCCGTCGAACTATGTCG
TGCTCGAGCCGAAGGATGCCGACGTCAACGGACCGTCTGCGGTGTTCTAC
ACCGAGGGGTATCTGGCCGAGGCCAACGCCGTCATGACTGCAGGCGCACA
TGATGCAGGCGGCGGATTCAGCCGGTCGGCCGGAACCAACGCGGCACGCG
GGGTCATGGTGATCGTCGCGGCCGTCGCCGTCGGACTGTTGCTGATGTTC
CGAGGGATCAACGATTCCGGCGACGACACCGCAGCCGAATCCACCGAAGC
CCCGGCCGAGACCGGCGGCGAAGGCCAAGATCCCGCCGGAGCAGGCGACA
CCGCGTCCACCACCGTCCCGACCGACGACGCGTCGACCGAGACCACCTCC
ACCACGGTCTCGGCTCCGCCCCGTGACCCGAGCGAGGTCAAGGTGTTGGT
GCTCAACGGCACCGATGCCGACAACCGCACCGCCGGCGTGGCCGGTGCCG
GCACCGACGTGCTCAAGCCGTCGAACTATGTCGTGCTCGAGCCGAAGGAT
GCCGACGTCAACGGACCGTCTGCGGTGTTCTACACCGAGGGGTATCTGGC
CGAGGCCAACGCCGTC
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