mRNA_M-pyrifera_M_contig7590.17911.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7590.17911.1
Unique NamemRNA_M-pyrifera_M_contig7590.17911.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7590.17911.1 vs. uniprot
Match: D7G1W1_ECTSI (Carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W1_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 3.330e-115
Identity = 209/381 (54.86%), Postives = 245/381 (64.30%), Query Frame = 1
Query:    1 MVAADMGHLKDTVEKLDLAFRETMGRQGKDLAAVVDQLGLR--SAESLQGSANRTPNAAAEQSFGKTKGNGDEKIRPAASDPAGNNSPNK-NLASGNI-GTGQYQQLQSQQG--HATADFQGFEKSEGGGAXXXXXXXGLWSQVGEXXXXXXXXPXXXXXXGESV-VWNAYSRGKWVNGQWVPKVLPDDTTPDVPSLV---KNQRRVLLLSERRSGGHAVGGILNADPRVFYVGDPCRMGGGPEALDGHACSLALSRLLACQPTVNDIRNLYSFSYIVGRSRALSEFEDLRWRVGGSPEDNDELVRDKLVQQCRLSKAVVIKETRLPEVTPQLTTEELGTEFLHIVRDPRAAVHGLAEAWEGSKSNYNLAMAEDCTELASR 1113
            MVAADMGHLKDTVEKLD   RETMG+ GKDLAAV+ QLGL   S  +L   +   P  A   +  K +G       PA   P      ++  LA G+  G G    L +  G  H        + S  GG        G  +Q                   E V VWNAY RGKWVNGQWVPKVL DDT+PD+  L    K QRRVLLLSE+RSGGHAVGG+LNAD RVFYV DPCRMGGGPEALD  ACSLA++RLLACQPT NDIRNL+SFSYIV RSR LSE E LRW+  G+P++NDE  R  +++QCRLS  VV+KETRL EV P+L+T EL  EFLHIVRDPRAA+HG+AE WE S +    +MA DC+++ASR
Sbjct:    1 MVAADMGHLKDTVEKLDHIVRETMGQHGKDLAAVLVQLGLERPSRSNLVAGSESRPMPAEGLTNNKARG-----ATPAWPSPLQQAPQDQLQLAGGSRQGQGDASVLGAGGGVDHVAVRGTAEDGSLAGGGPTTGKALGRDTQGNGKGAAGGLTEEGARGAAEGVAVWNAYQRGKWVNGQWVPKVLQDDTSPDLSQLATTGKKQRRVLLLSEKRSGGHAVGGVLNADTRVFYVADPCRMGGGPEALDAGACSLAVTRLLACQPTTNDIRNLFSFSYIVERSRVLSESEGLRWQAEGTPDENDEETRAAVIRQCRLSSVVVVKETRLAEVAPRLSTPELDLEFLHIVRDPRAAIHGMAELWEKSDNKMERSMARDCSDVASR 376          
BLAST of mRNA_M-pyrifera_M_contig7590.17911.1 vs. uniprot
Match: A0A835ZGF5_9STRA (HEAT repeat-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.770e-12
Identity = 54/182 (29.67%), Postives = 78/182 (42.86%), Query Frame = 1
Query:  571 VKNQRRVLLLSERRSGGHAVGGILNADPRVFYVGDPCRMGG-GPEALDGHACSLALSRLLACQPTVNDIRNLYSFSYIVGRSRALSEFEDLRWRVGGSPEDNDELVRDKLVQQCRLSKAVVIKETRLPEVTPQLTTEELGTEFLHIVRDPRAAVHGLAEAWEGSKSNYNLAMAEDCTELASR 1113
            V  Q+R+L++SE RSG    G + N++ ++FY+ +PC+ GG G  AL   AC   L RLL C+PTV D+ N++                                 RD      R S  VV+KE R   V   +      T+ +H+VRDPR A+      W G          E C    ++
Sbjct:  244 VAEQKRLLIVSEPRSGSTQFGELFNSNEQLFYLFEPCKGGGDGGTALYDEACGYLLQRLLECEPTVKDVDNMF---------------------------------RD------RQSAGVVVKEIRTVGVHVDMLPR--ATKVMHLVRDPRDAMLSALALWRGQDGGLEFQSGEFCRRTMAK 384          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7590.17911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W1_ECTSI3.330e-11554.86Carbohydrate (N-acetylglucosamine 6-O) sulfotransf... [more]
A0A835ZGF5_9STRA1.770e-1229.67HEAT repeat-containing protein 1 n=1 Tax=Tribonema... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7590contigM-pyrifera_M_contig7590:2413..12404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-07_003910.1
Exons6
Model size1116
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7590.17911.1prot_M-pyrifera_M_contig7590.17911.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7590 2413..12404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816658.177334-CDS-M-pyrifera_M_contig7590:2412..24481622816658.177334-CDS-M-pyrifera_M_contig7590:2412..2448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 2413..2448 +
1692278102.9935117-CDS-M-pyrifera_M_contig7590:2412..24481692278102.9935117-CDS-M-pyrifera_M_contig7590:2412..2448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 2413..2448 +
1622816658.1931608-CDS-M-pyrifera_M_contig7590:5734..58151622816658.1931608-CDS-M-pyrifera_M_contig7590:5734..5815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 5735..5815 +
1692278103.005484-CDS-M-pyrifera_M_contig7590:5734..58151692278103.005484-CDS-M-pyrifera_M_contig7590:5734..5815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 5735..5815 +
1622816658.2079644-CDS-M-pyrifera_M_contig7590:6403..68171622816658.2079644-CDS-M-pyrifera_M_contig7590:6403..6817Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 6404..6817 +
1692278103.0159461-CDS-M-pyrifera_M_contig7590:6403..68171692278103.0159461-CDS-M-pyrifera_M_contig7590:6403..6817Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 6404..6817 +
1622816658.2196906-CDS-M-pyrifera_M_contig7590:7296..75751622816658.2196906-CDS-M-pyrifera_M_contig7590:7296..7575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 7297..7575 +
1692278103.026146-CDS-M-pyrifera_M_contig7590:7296..75751692278103.026146-CDS-M-pyrifera_M_contig7590:7296..7575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 7297..7575 +
1622816658.2332866-CDS-M-pyrifera_M_contig7590:8713..88571622816658.2332866-CDS-M-pyrifera_M_contig7590:8713..8857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 8714..8857 +
1692278103.0365775-CDS-M-pyrifera_M_contig7590:8713..88571692278103.0365775-CDS-M-pyrifera_M_contig7590:8713..8857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 8714..8857 +
1622816658.247707-CDS-M-pyrifera_M_contig7590:12242..124041622816658.247707-CDS-M-pyrifera_M_contig7590:12242..12404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 12243..12404 +
1692278103.0475388-CDS-M-pyrifera_M_contig7590:12242..124041692278103.0475388-CDS-M-pyrifera_M_contig7590:12242..12404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7590 12243..12404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7590.17911.1

>prot_M-pyrifera_M_contig7590.17911.1 ID=prot_M-pyrifera_M_contig7590.17911.1|Name=mRNA_M-pyrifera_M_contig7590.17911.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=372bp
MVAADMGHLKDTVEKLDLAFRETMGRQGKDLAAVVDQLGLRSAESLQGSA
NRTPNAAAEQSFGKTKGNGDEKIRPAASDPAGNNSPNKNLASGNIGTGQY
QQLQSQQGHATADFQGFEKSEGGGAGGGAGGGGLWSQVGEGGGGGDGKPA
QGEGGGESVVWNAYSRGKWVNGQWVPKVLPDDTTPDVPSLVKNQRRVLLL
SERRSGGHAVGGILNADPRVFYVGDPCRMGGGPEALDGHACSLALSRLLA
CQPTVNDIRNLYSFSYIVGRSRALSEFEDLRWRVGGSPEDNDELVRDKLV
QQCRLSKAVVIKETRLPEVTPQLTTEELGTEFLHIVRDPRAAVHGLAEAW
EGSKSNYNLAMAEDCTELASR*
back to top

mRNA from alignment at M-pyrifera_M_contig7590:2413..12404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7590.17911.1 ID=mRNA_M-pyrifera_M_contig7590.17911.1|Name=mRNA_M-pyrifera_M_contig7590.17911.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9992bp|location=Sequence derived from alignment at M-pyrifera_M_contig7590:2413..12404+ (Macrocystis pyrifera P11B4 male)
ATGGTCGCGGCCGACATGGGCCACCTCAAGGACACGGTGAGCTGGTACTG TGATTGATGTCTGTTGTATCGTTTCCCCTTCCTCCAGAACACACCGACAC CTACAGCAGTTCGTACACAGGAAAAGCCCGTCACCTACTGTGTACGTTCG TTCCTGCGCGTACGCGTAGTACCTGCTACTTGAATACCTACTCGTAGATT TTGCTTACGTGTACTGCTGCACTCCACAACCCGTATCATATGTGTGCTGT GTATGCGCGTGCACAACCCCTCGTAGCATTGTTGTACATGTTACATAGTA CATTGTACAGTAGCACTTCGGACACACATGCATCATATACGTATGTGCAC TGCAGTAAGTGCATCACCGAACGGCCAAGCTGCAGCAGCCCGGGCCAGAC CTGCGTCGTGCGAACGATGCTGTGCAATCGAGTATAAATGCGTAGTCGAC ATTTTTTTTTGGTCCGTACTTTTTTCTTCTTTATATTTTTTTCAAAGAAA AGATTAAACACACTGTACTCTGTAACCCCGTTCAGATTCGCACCCCGTTT TTGGCACTAAGTACTTCGAATTAGAGTCGAATATGTGCTTCTGTGGAAGT ATATTACTTGGGGTAAAACTTTCATATTACACATGGTAACTTCAAATAGT CCCCATTACGTACCGCCAATGCTGTACATACTTCCGGCATGTGGTCTATG CCTGGAATGCACGGACCGATTGTTTGTTACATACCTGGTATATAATAACC AAACGTTCATTAATTTTCCCGACAGAGTGGTGATCTTTGCCTAAGTGTTT TACAAATGCAAGGGCTCCAGCAGTACTGCTGTACAATAGTATCATACCGC TCTTTCCAGAAGTGTGGGGACCGTTGGAGCAGTGATGTAAGCAAGGTTTT TGGAGTCCATATTATTGAATACCAACGACCCATAATACTCGTAGTTCCTG CAAGGTTACGAGTAGCCTGCCGAGACTCCTTTGGGACCGTTATTTTTGTT TGTATCAGTACTGCGGGAGAACTATCAATAATCAGGACCAGGTATGGCGT GCAAACATAGTGGATAGGGGGGTTCAGGGGTTTTGGGTCCACCGTGGGTT TTGATTACCATGTGCCTGGTATTACTATTTATGTACCACTATGCTCCTCC GTGATAATGATTGGTCCGACCAGGCACCTGTACCTAACCTCTCCTTACTG CACTTGCGATCGAGCTAACTGCTGCTGTGCCTTTTAGTAGTTATCATATG CACACGGTCTGGGGTGGTTGTAAATTTGTATATACACAGCTGACAGCACG GCCACAACACTTTGGGACGTGCGAAAACGTAGCCATTACTGTGGTAAACG TTCAGCCGCGTCATCTGGTCATTGGTGTCGGACCAGCCTCTCGTAACGGG GAGATATACCCATATACCTATCGTCAGCGAGTATGCTGCGCGGTTCTTTA ACCGATACGGAAGGAGGAGCAGCAGCAGTGTCTCATGAGCATGGCGACCC CACACTGTTGTACAGCCATTCATATTCCGAGAACGTCTCACATCTATACC CGTACATATACGATCTTTTGTGCAACCGATTACCCAAACATCTCCGCTGT CCGCTGTTTTCCAATCAACTACCTCTGCACGACATTCTTCTCACCATGAA CCCATGCTCCCGCACATCGGTCAGATCATCTACAGACCATTCCCACTTCA TGGTGTAGATCCTTCAGGGCAGACCGATACCTGATTTCTATTATTTGTAT GACCCAGCTAATGTTGCCGGGTGGAAGCCGTACATAACCTGCATGATCTG GCGCAAGTTTCCTGGGTTGGATCTGCACAATGCAAATCCTGCCCAACATC TCATAAGGGCAGGTTAGGATTTAAGTTATCTATCTGTAGATGATCTATCT GTCCGGCGTGTGGATGCTTTGTTCCAGTCTGATCGTGCTTATAAGGGACG TTTAGATGGCCACAAAATGTACAAATGCACCTTAACTTGATGATCAGATT GATATACACCAGTACCTTATGTGTATACGTACCGATACAGTAGTACGTTT GTGGTCTGCTCAACAAACAGCCTCCACGCGAAGATGAAGGAGTTTCTCTC TTATCTGAGCCGTGCTCTATTGGTAGCGGAATGTCATGGTATCCCCGGTT CCCCTCTGTTGTTGTGGAGACGTTACTATCCATAACCTTCTGGATTATTT GCCCCGCTCGCTCAGAGCTCATCTGGAGCGGCGCTAAGCGAGCCAATATA CTATCACATGTGTGAGTATTACAGGAGACGGTTAGCTTTGGCCACTTATC ATATCAACAATACCACCGCCTGAACCGCATCGGAGGACGACATTCACTGA ATCGGTCTCCGCATGCCACCCGCACCCGCGACGTCGCCCAGCACCTCATG CGATACGCGTATACATTCAGCATTTTTCCAAGACGAAGATTTTGTTCCGG CGGGAGTATCCCTTTCAACCTGCGCCGTTACCGACTCCTCCAGTATTAAC AGTGTGTTACGACTTGCACCAGCTCCTAGGCAAACAGTTGATAGTTCCCA CAAACTCCTTCTTACATCTTCGCTCCGAATTTTTTCCCGGAATTTCTCAG TCGGTCGGGGTCTGGGTTAGGTCCAGAGTTAGGGTTTTGTTTGGAAATAA GTACCACTGTGACCCCGATGTGGACACTAAACGGGGTCATATTCCCGCCG ATCGTGGTATATCTTCATGTTTGAAACCATTTTTTTGAGGCATAACATCT GCCTTCTGAGATTTTTCCGAGGCAGTCGGGGCCAGTTAGTAGTTAAAGTC AACAATTCTTTTGATAACCATTTTTCGAAGCTGGGCCAATGTCTACATAT ACTATAGAGCCCTCGATCCCCACCTTGCAGCCACAAACCTGGGGGCCTGA CTTAAGGACCAGCTTTTTACCGATGATGCTTTCTGATCGTCGGAAGTAAA TATCACAACTTTTGAAGAAAAAACGAGTCAATCGACCACGAAGACGCGGT AAAATTGTTGTTCTTGATGAGGCAAAAATGGGATGGGGGCAGATGGAGAC AAAGCAACCACTGCTGTTCTGTGGGCGAAGCGTTTTTCATGGGGATATGA TGGAGTGCGCCCGCAGCGGGGCTATTTAAGCGAAGCAGGCGTTTTATGCC CGTCCTCGAGATCGCGAGGTGGCCGGCGCAGCCCCTGAGCCAATACGAGC TAGCATTGGGCATCTCCTCACCCCGATAATCCACCCACCTATTCCTCCAT CCGCCCGCCCACCCACCCCACCCCACCCCATACACCCCATACACCCCACC CACCCTTCCATCCGCCCGCCAGGTGGAGAAGTTGGATCTTGCGTTTAGGG AAACTATGGGCCGGCAGGGAAAAGACCTTGCCGCGGTTGTGGACCAGCTA GGGGTGAGAAACAACAGACACGGCTGACGTTGGCGTAGCCGCCGCTGCCG CTGCCGCCGCTGATAATTGGTGCAACCTTTATGCTCGCCCTTCCTGTGGT GTCTTGCTTCTTGTCCCTTCATATTCCACTGATAGCCTGGAGGATGTGTG ATAGAATGAATACATACAAGTACCCTGGGAAGTATTTGGTTGGCGACCGT TCGAGAGAATAACGGTCACGTATGTATGTATGTATTGTATTCTTCTCCTG ATAGTAGGCTGATTGGTCCCACAGCGAGCGGTTCGGAACGCACGGCACCC GAGATGCAGCGCACACGGTTTTTTTATTCCGAAGAACCTTTCGCGCAATG ATGTGATACAAAGCTGTTTACAGCAATGTCGCTCCTCTTCCCCCTCTCCC TTTCTACCCCCGGTGCAAGCAATGTTTGCCTGGTCGACGCATACCCGACG TGCTCTGGCCCGGCATTGTAGGAATGCGAGGGTATATGGTCATACGACTG CGACCATGCATGTCATGTCCTGTACCCTCACCCTCGTCTTCCTTCCCCCT CCTCGTTGCCTTCTCCGAACGCGCATTGCCTTTTTACGTAGCTTCGATCC GCGGAAAGCCTCCAAGGGTCGGCGAACCGAACCCCAAACGCCGCCGCCGA ACAATCGTTTGGGAAAACCAAGGGAAACGGGGATGAAAAAATCCGACCAG CCGCCTCTGACCCCGCCGGAAACAACTCTCCGAATAAGAATCTCGCGTCA GGCAACATCGGGACGGGGCAGTACCAGCAGTTGCAGAGCCAGCAGGGGCA TGCCACTGCCGATTTTCAGGGTTTTGAGAAGTCGGAGGGAGGCGGTGCTG GCGGGGGAGCGGGGGGGGGCGGTCTCTGGTCGCAGGTCGGGGAAGGCGGC GGTGGCGGGGATGGGAAGCCAGCACAGGGGGAGGGGGGAGGGGAGAGTGT CGTTTGGAACGCGTACTCGCGCGGGAAGTGGGTCAACGGGCAGTGGGTAC CGAAGGTGCGCCGTTGAAATTTCTTCGCAATCGGGATCTGAAGAGATTTT TGCAGAGATGCCTTCGCTCGCGCGTTGTTGCTGTTTCCTTGCTTGCACCG TGGTGGAGCGCGGCCTTTTCTTGCGCTTCTTAGCTACCAGGTACTTCGGA GCGCGGTGTTCCTATAGCCGGTACAGTCGAACAACCCCTGCCCCAAATTA CATGCGTACTGCCTTCGCGCCCGCCTTCTTGTCACTGTTTTGCCGCACAG CGTAGCGCCACGCTGTTGTATGCTATCTGTAGGCAGTCGCAACCTATAAT TTGTTTTGAACGGCCTTGCCCCAGGAGCAAGCGCCCATACGTCCGCGATA CTTTAGGCACAACGCTAAACCAAGTTTTCTTTGTTACGAACGAATAGCCC CCCCCCCCCCCTTCTTCTCCCCTTCCCCCCTCCCCATCCCCTCCCCCAAT CTCACATATCTCCCGAACCTTTTTACTCTTGCAGGTCTTACCAGACGACA CGACTCCCGACGTTCCCAGCTTGGTGAAGAACCAGCGCCGAGTCCTGCTC TTGTCTGAGCGGCGATCGGGGGGGCACGCCGTCGGCGGAATACTTAATGC CGACCCCCGCGTGTTTTACGTGGGCGACCCCTGTCGCATGGGCGGCGGAC CCGAAGCCCTTGACGGCCACGCGTGCTCGCTGGCCTTGTCGAGGCTGCTT GCGTGCCAGCCCACTGTCAACGACATCCGCAACCTCTACTCGTTTTCGTA CATAGTGGGGAGGGTGAGAAGGGGTTTCGATTTTTTCGGGTAGCGGTTGG ATAGATGAACGCAACAGTAGGTGCTGTGAGCTAGTTGACTGTTATAAGTA GCCAACTATTTTTTTGCTGGGTACCGGTAGGTATACAGTAGTTCGGTTAG TCGCGTGCGATATCTCGGGTGCTGTTCGTCTTCGCATAATATCGGAGTGA TGGGTGCGTTTGTAGCTCTCAAGTTCTATTTTTTATTGACAAACTACCAA GCTAGATAGTCGGCTTACTTCGTTTCCCACCTAAACCCTAGCCGAGAAGT CATCAGTGGTAAGCCAAGTCACAGCCGTATTGCACGGAGAGGGGCTCGTA AGACGGTCGCGGATGCAAGCGATGGGATACGGTTTTAAATTAGTCGTTTC ATCTTGGGGGGTAGGTTTAGCACTACCAATACATACCGCGAAAGGTAAAC TCCGGCGTCCCCCTGTGCCAGGAAAATGAGGGATCACCGCGCAGCTGACC AGAGTTGTGATTTCTCTCGTATTATATCGCCCTTGAAACATCCGTCTGTG TTATTTTGAACCGATGCATGTCACGACAATTCGGGGGGGGGAAAGGCAAT AGCTGAGAGACGGCCCAGACAGCATCAGTGTAGCGGTGGGGTGGCGCCTC TAGTTATATCAAAGAAAATATTGTAGCCGTACAACTGCATCCCTCCATGG GCGACTCTGCTAATGCCGGAAGATGAGCAGAAGTCGTACAGAGCGAGAAG AGGCGCATTTCCACCGTGAAATTCAACAATTGCAATAGACAGGAGGAATC AATAAGGTTTGCGCAGAAATTTCCCAGAAGTTTCCCCGAACGACTACTTC CAACGACGCTGTCATCCGTATGCAAAGGAGTCCGGCCTCACAAGCGGTTC ACAGTAGGATGCAGCTCGCCCTTCATGCGACTCTCCGGACACCCCACGGC GTTTTCACCGTCTGGCAGGCGAAACCCGACGTGATCTATCCCGGCGATGA AGGGATGTGGTCTACGTCCATGCGACTACGGCTATGCATGACACGAGTGC CCCCCTCCTCCCCTTCCCTCCCTCTCTCCCTCCCTCACACCCCCCGTTCT CTCTCTCACACACCCCGTTTCCTGGTCGGACGTTCCGTTTGCTTTGAGCA GAGTCGGGCGTTGTCTGAGTTTGAGGATCTTCGTTGGCGGGTTGGGGGCT CCCCCGAAGACAACGACGAGCTGGTTAGGGACAAGCTGGTGCAGCAGTGC CGCCTGAGCAAGGCCGTAGTCATCAAGGAAACGCGACTTCCCGAGGTGAG ACCTTTTATTCAATTGTTGCACGTGTGCATGCATGCTCAATTCGACACGA GTCTTACTATTCAGTATTCAAGGGAAGAATATGCCGATCTCTTTGGCGTG ATATAGCTCAGCGGTCTATGGTGCCCAGCACCATGATTCCGATGCTGTGT TCAATTCTCGAGTTGCGACGCTTTTGTTTTTACACACGACACGAAAATGA ACGTGGTGGAAGTGTGGTGAGCTTAAGCTTTATTTTTACCAATCCGCCGG AAGAATTAAAAAAAACAAAAACAACGATAAAAATAAAGCGTGCATCGTAT TGGGGGGGGGGAGGGGAGGAGTGCTCGCTATGTGAAACTTAAATAAGGAA AATACAACGATTAGATGGGAAAGCACACACGCACACACCATAGCGTCAGC AGCAACATCACTTCCACCAAGGCCAGCCCTCGGCTCTAGTAAAAACCTAC TCGGGCGAAACATGCCTCATACTAAGTCCGAGTGGTTTGTCTCCAACAAC ATGGATTGCCCTCTTTTTCTTGATTGCAGTGCCGCGAACAAGTCAACCGT CTAGGTGCGCGCAGCAGCACATCAAGTGTCACGCCACGTGCGTGTCGTCA GGTCAGGATGACATTTTTTCCTAGCTCGGGTGCAGCATCCTATCCCCCTC CGCTAGGGCGTTTGGACCGACTGATGTCGCCGGCGTACAACATACCCTAC ATGGCCTCTCGCACGCATGCTATCGCCCCCACCTTTCCACGCACCTCCTC CTCGCCGGGGAAGAGGATTTCACGGAGCGATCGGGCTGCTACATGGAATA ATATCAGAGGCGGTAGGCATATGTGAAACCGTCAGTGTCGTCGGTTGCAA GCCTGATCAATGGAAACCCCCTCACGCGTCTCAGCTACTTCAGCAGCCCG GGCTGATTCGCGTGACGAATGGTTGGGCACGCTCCTGTTTTCGAGTCTCG AACGGTTTCATTGAGCCCCTTTACTGCTACAAAAAATAATGAGACCATTT ATACACTACTCTTCATGCCATGCGTTCCTGGTATTTCCGTCCGGAGTCCC ACTCTTTTTTCCAAGTGGTTCGTCCCAATAAACGCGGGTGTCGTAGTTCT ACGTAAAGGGGGTCAAGTTTAACACCCCTCTCGCACCGAGTCTTCCACGA CCATCTTAAACATACTTCAAAACAGGAACAAACCCCCGTCTCCTTTCCTT CTCGCGCTCGATGCAAGCAATCAATGTCTGCCTGGTCGGTGAAAATCTGA CGTGCTCCGTGCCGGCCTTGCAGGGACGCGAAGGTCTATGCTCATACGAC TACGGCCGTGCATGACACGAGTTTCTCCCCCCCCCTATTCTTCTCCGCTT CGTCCCCGCCCCCCCCCTCCCTGTGATGCAACGGCGGGATCAAACAACCG GCAAATGTCATGCTCTTCCTCCGTTTCCGAAGTATGTACATACCTGATAT ATATGTGACACACGAGAGTGTCCCCTCCCTGACGAGGGTTGTGACGTGGC CAGACTTGACGATCAGGTGTTGATTGGGTGACGAAACAAGCCAAGTACCT GACATTAGAAAGTAGAGCGCGAGCTACAGTGTGTACAAAGGCGCCAAGTG AGGTCCACAGAGACCAGAAATAGCACCGGAAACATTAACAGCCGTGCAAC TGACGGCAATATTATTCCTACACAACAACCAACCAATAGCTTAACCGGCG ACTCATATACTGTGGGGGGCTCACAATAGTGCCGGCTGAATAGTGCCACT ACTCTCAATAAATGCCGGTGAATCGCTTGGCAAGAATAGAACCCCGAAAA TGCAGGTACCGGCATCATTGGGAGCGGCCTCTTTGTCGAGAAAAATATGC TTCGACCTTCGTCCGAGCGGGTGTGTTTTCTTATGACCCCGGTGATAGTG CTATAGTGTTATGCGGTATGTGCGATCAGATAACACACCTCACCACGCGG TCTACGGCGGGTGGGGACGAAGAGGAGGCGCGGGCGTTCCTCACGCGCTT GATTTTCGGTCGTCGCCTGCTTTGGGCTTTGAATAGTGCCGGTTTAGGCA TCTACAACAGTATAATACAGAGCCCCCCAGCCTTGCTCCCCACTCCACGC TGCCCAGCTTGCTGTAGACGAGAGAGGAGAGAGATACCGAAGTACAGCAC GATACCAGCAATCACACACCTAAATATCACACCCCTACGGTGTAGAGCAC CTACTAAAAAATCGAGCAATGAGAAGGACGGGCTAGGATTTACAGCAAAA TAAGAAAGTCGGGAGTCGTTGCATTGAAGTAACTGTAGAAGTCGCCCATT CTCTGAATGAGAAATTCAGCCTGGGCCAGTTTTCCTGATTTGTACTCCAG CAGGTTTTCTGTACTGCTGTACAGCATGACCAGAAAAACCACACCATGCC CTGTGCAGCGGGTGAGCTGCGCCACCGTCAGGGACGCACGTCAAAAGCCC CTGACGGCCACACACGAGGAGAGCGGCAACGGAGATGCCGCCTTCTACCC GGGGAAGGTTACTGGATGGCGAGGATCGCAGCGTACACCTCTAAACCAGT GCGACAGGCAGACCCCCCGTTATCACTCAGAATGTTCTCCCTTCATGTGG CACTCTATTTGGCGTTGTATGTCGCACTCCAAATCAGTTGTTCTTCGATA ATGCCGGTATCGGCATTATTGAAGGCATCTCAAACCCCCAACAGGGCCGG TACCGGTACCTTTAGCAATATTGCCGGTGTCCTCAATAGTGCCCGTAGTT TTGGGCTGGCGCATACCGATACTACTTCGAGCCCCCCACCGCTGTACATG GATTAACTTTAGAGACCAACAATTTTTACCGCACACAGCTACTGCCACTG TCGGGGCTAGGCAACTGATAACTAGGCGACTTATAGTCAACCATCCAAGG ACTAGCTAGTCGGCATCTTTACAGGAAGCCAGACCACTAGTAACTAGTCG GCGACATATAGGCAGCCGGCCAACTACTAAATAGTAATTAGTTGGCGACC TAAAGTCAAGCAGCCAACTATTAAGTAATATCTAGCCTGCGACTCACAGT CAACCAGCCACCAACTAAGTAGTAACTAGTCGACGACTCATGGCCAGCCA GTCAACTATTAAATACCTGGTAGTAACTAGTCGGCGACTTGCAGTGAACC AATCAACTATTAAATAGCAACTAGTCGTCGACTAATAGTCAAACAGCCAG CTAGTCACTAGTCGGCGGCGACTTACAACTATCCAACTAATTACTTTAGT CGGCGACTTAAATACAGGAAACCAATTAATAGCCGCACCCCTTACCCCTC GCTCGCTCGCGCCCCCCCCCCCCGCCACCGCCGCTCGTTACGGCGGCCAC CGCTACCACCGCGGCTACTGACCGTATCAGGTGACACCACAGCTGACGAC GGAGGAATTGGGTACCGAGTTTTTGCACATCGTGCGCGACCCCAGGGCCG CGGTTCACGGGCTGGCGGAAGCGTGGGAGGGGTCGAAGAGCAACTACAAC CTCGCTATGGCCGAGGACTGCACGGAGCTGGCGTCCAGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7590:2413..12404+

>mRNA_M-pyrifera_M_contig7590.17911.1 ID=mRNA_M-pyrifera_M_contig7590.17911.1|Name=mRNA_M-pyrifera_M_contig7590.17911.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2232bp|location=Sequence derived from alignment at M-pyrifera_M_contig7590:2413..12404+ (Macrocystis pyrifera P11B4 male)
ATGGTCGCGGCCGACATGGGCCACCTCAAGGACACGATGGTCGCGGCCGA
CATGGGCCACCTCAAGGACACGGTGGAGAAGTTGGATCTTGCGTTTAGGG
AAACTATGGGCCGGCAGGGAAAAGACCTTGCCGCGGTTGTGGACCAGCTA
GGGGTGGAGAAGTTGGATCTTGCGTTTAGGGAAACTATGGGCCGGCAGGG
AAAAGACCTTGCCGCGGTTGTGGACCAGCTAGGGCTTCGATCCGCGGAAA
GCCTCCAAGGGTCGGCGAACCGAACCCCAAACGCCGCCGCCGAACAATCG
TTTGGGAAAACCAAGGGAAACGGGGATGAAAAAATCCGACCAGCCGCCTC
TGACCCCGCCGGAAACAACTCTCCGAATAAGAATCTCGCGTCAGGCAACA
TCGGGACGGGGCAGTACCAGCAGTTGCAGAGCCAGCAGGGGCATGCCACT
GCCGATTTTCAGGGTTTTGAGAAGTCGGAGGGAGGCGGTGCTGGCGGGGG
AGCGGGGGGGGGCGGTCTCTGGTCGCAGGTCGGGGAAGGCGGCGGTGGCG
GGGATGGGAAGCCAGCACAGGGGGAGGGGGGAGGGGAGAGTGTCGTTTGG
AACGCGTACTCGCGCGGGAAGTGGGTCAACGGGCAGTGGGTACCGAAGCT
TCGATCCGCGGAAAGCCTCCAAGGGTCGGCGAACCGAACCCCAAACGCCG
CCGCCGAACAATCGTTTGGGAAAACCAAGGGAAACGGGGATGAAAAAATC
CGACCAGCCGCCTCTGACCCCGCCGGAAACAACTCTCCGAATAAGAATCT
CGCGTCAGGCAACATCGGGACGGGGCAGTACCAGCAGTTGCAGAGCCAGC
AGGGGCATGCCACTGCCGATTTTCAGGGTTTTGAGAAGTCGGAGGGAGGC
GGTGCTGGCGGGGGAGCGGGGGGGGGCGGTCTCTGGTCGCAGGTCGGGGA
AGGCGGCGGTGGCGGGGATGGGAAGCCAGCACAGGGGGAGGGGGGAGGGG
AGAGTGTCGTTTGGAACGCGTACTCGCGCGGGAAGTGGGTCAACGGGCAG
TGGGTACCGAAGGTCTTACCAGACGACACGACTCCCGACGTTCCCAGCTT
GGTGAAGAACCAGCGCCGAGTCCTGCTCTTGTCTGAGCGGCGATCGGGGG
GGCACGCCGTCGGCGGAATACTTAATGCCGACCCCCGCGTGTTTTACGTG
GGCGACCCCTGTCGCATGGGCGGCGGACCCGAAGCCCTTGACGGCCACGC
GTGCTCGCTGGCCTTGTCGAGGCTGCTTGCGTGCCAGCCCACTGTCAACG
ACATCCGCAACCTCTACTCGTTTTCGTACATAGTGGGGAGGGTCTTACCA
GACGACACGACTCCCGACGTTCCCAGCTTGGTGAAGAACCAGCGCCGAGT
CCTGCTCTTGTCTGAGCGGCGATCGGGGGGGCACGCCGTCGGCGGAATAC
TTAATGCCGACCCCCGCGTGTTTTACGTGGGCGACCCCTGTCGCATGGGC
GGCGGACCCGAAGCCCTTGACGGCCACGCGTGCTCGCTGGCCTTGTCGAG
GCTGCTTGCGTGCCAGCCCACTGTCAACGACATCCGCAACCTCTACTCGT
TTTCGTACATAGTGGGGAGGAGTCGGGCGTTGTCTGAGTTTGAGGATCTT
CGTTGGCGGGTTGGGGGCTCCCCCGAAGACAACGACGAGCTGGTTAGGGA
CAAGCTGGTGCAGCAGTGCCGCCTGAGCAAGGCCGTAGTCATCAAGGAAA
CGCGACTTCCCGAGAGTCGGGCGTTGTCTGAGTTTGAGGATCTTCGTTGG
CGGGTTGGGGGCTCCCCCGAAGACAACGACGAGCTGGTTAGGGACAAGCT
GGTGCAGCAGTGCCGCCTGAGCAAGGCCGTAGTCATCAAGGAAACGCGAC
TTCCCGAGGTGACACCACAGCTGACGACGGAGGAATTGGGTACCGAGTTT
TTGCACATCGTGCGCGACCCCAGGGCCGCGGTTCACGGGCTGGCGGAAGC
GTGGGAGGGGTCGAAGAGCAACTACAACCTCGCTATGGCCGAGGACTGCA
CGGAGCTGGCGTCCAGGTGAGTGACACCACAGCTGACGACGGAGGAATTG
GGTACCGAGTTTTTGCACATCGTGCGCGACCCCAGGGCCGCGGTTCACGG
GCTGGCGGAAGCGTGGGAGGGGTCGAAGAGCAACTACAACCTCGCTATGG
CCGAGGACTGCACGGAGCTGGCGTCCAGGTGA
back to top