mRNA_M-pyrifera_M_contig75877.17906.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75877.17906.1
Unique NamemRNA_M-pyrifera_M_contig75877.17906.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: A0A8J9YYK5_BRALA (RTCA protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YYK5_BRALA)

HSP 1 Score: 85.5 bits (210), Expect = 5.750e-18
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   13 GEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSVTPE 315
            G G  +V++AET TGCR G S L ++    ++V  K  + L + L+ G CVDE+  DQ I++   A   S V S P++LH +T + +A  LT AK +VTPE
Sbjct:  139 GNGNGIVIMAETSTGCRLGGSALGKRGVPADDVGRKAAQVLVRNLKHGGCVDEYLQDQLILFMALAKGKSSVRSGPITLHTKTAIFIAETLTKAKFTVTPE 239          
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: C3YTD9_BRAFL (RNA 3'-terminal-phosphate cyclase (ATP) n=2 Tax=Branchiostoma TaxID=7737 RepID=C3YTD9_BRAFL)

HSP 1 Score: 86.3 bits (212), Expect = 9.860e-18
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   13 GEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSVTPE 315
            G G  +V++AET TGCR G S L ++  Q E+V  +  + L + ++ G CVDE+  DQ I++   A   S V S P++LH +T + +A  LT AK +VTPE
Sbjct:  245 GNGNGIVIMAETSTGCRLGGSALGKRGVQAEDVGREAAQMLVRNMQHGGCVDEYLQDQLILFMALAKGKSSVRSGPITLHTKTAIFIAETLTKAKFTVTPE 345          
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: UPI000854D77D (RNA 3'-terminal phosphate cyclase n=2 Tax=Ranoidea TaxID=30352 RepID=UPI000854D77D)

HSP 1 Score: 82.8 bits (203), Expect = 1.870e-16
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    7 SAGEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSVT 309
            + G G  +++VAET TGC F  S L +K    + V  +  E L + LR G CVDE+  DQ II+   A   S++ + PL+LH QT +  A QLT AK +VT
Sbjct:  241 AVGNGSGIIIVAETSTGCIFAGSSLGKKGVTADRVGAEAAEILLRNLRHGGCVDEYLQDQLIIFMALADGVSQLRTGPLTLHTQTAIHFAEQLTKAKFTVT 341          
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: A0A7S3YAG2_9EUKA (RNA 3'-terminal-phosphate cyclase (ATP) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YAG2_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 2.220e-16
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   13 GEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSVTP 312
            G GGS+V+VAET+TGC  G S + E+  + E+V E     L + L  G CVDEH  DQ II+   ++ PS++ +   +LH +T +  A +LT A  ++TP
Sbjct:  334 GSGGSIVLVAETETGCYLGGSAVAERELKSEKVGEIAAASLSQSLVHGYCVDEHLQDQLIIFMALSSLPSRIKTGSPTLHTRTAIHFAEKLTGASFTITP 433          
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: A9V0E9_MONBE (RNA 3'-terminal-phosphate cyclase (ATP) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V0E9_MONBE)

HSP 1 Score: 82.4 bits (202), Expect = 4.330e-16
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    7 SAGEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSVTPEKE 321
            + G G  +V+VAET TGCR G S L ++    E+V     + L   +  G CVDE+ ADQ II    A+  S+V + PLSLH +T + LA +L+ AK+SV+  ++
Sbjct:  651 AVGAGTGIVLVAETSTGCRLGGSALGKRGVPAEKVGRAAAQELLAGINAGGCVDEYAADQIIILMALASGTSRVRTGPLSLHTETAIHLARELSGAKISVSSAED 755          
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: UPI0012ECFED9 (RNA 3'-terminal phosphate cyclase n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012ECFED9)

HSP 1 Score: 79.3 bits (194), Expect = 6.810e-16
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    7 SAGEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSVTPEKE 321
            + G G  ++++AE+ TGC F  S L +K   V+++  +  E L + +R   CVDE   DQ II+   A   S++ + P++LH QT + +A QLT AK ++T  ++
Sbjct:   97 ACGNGNGIIIIAESSTGCVFAGSALGKKGVYVDKIGIEAAEMLLRNIRHNGCVDEFLQDQLIIFMALAKGTSRIRTGPVTLHTQTAIHIAEQLTQAKFTITKSED 201          
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: A0A3B3R7D6_9TELE (RNA 3'-terminal-phosphate cyclase (ATP) n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3R7D6_9TELE)

HSP 1 Score: 80.5 bits (197), Expect = 1.290e-15
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    7 SAGEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSVTPEKE 321
            + G G  ++++AE+ TGC F  S L +K    ++V  +  E L + +R   CVDE   DQ IIY   A   S++ + P++LH QT + +A QLT+AK SVT  ++
Sbjct:  238 ACGNGNGIIIIAESSTGCIFAGSSLGKKGVYADKVGVEAAEMLLRNIRHTGCVDEFLQDQLIIYMALAKGTSRIRTGPVTLHTQTAIHVAEQLTTAKFSVTKAED 342          
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: A0A444TYX8_ACIRT (RNA 3'-terminal-phosphate cyclase (ATP) n=5 Tax=Acipenseroidei TaxID=186622 RepID=A0A444TYX8_ACIRT)

HSP 1 Score: 80.5 bits (197), Expect = 1.290e-15
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    7 SAGEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSVTPEKE 321
            S G G  ++++AE+ TGC F  S L +K    ++V  +  E L +  R   CVDE+  DQ II+   A   S++ + PL+LH QT + +A QLT AK +VT  ++
Sbjct:  239 SFGNGNGIILIAESSTGCVFAASALGKKGVYADKVGCEAAEMLLRNTRHNGCVDEYMQDQMIIFMALANGTSRIRTGPLTLHTQTAIHIAEQLTKAKFTVTKAED 343          
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: A0A6L2QB25_COPFO (RNA 3'-terminal-phosphate cyclase (ATP) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2QB25_COPFO)

HSP 1 Score: 80.5 bits (197), Expect = 1.670e-15
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    1 GWSAGEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSV 306
            G + G G  + + AET  GC  G S L ++  + EEV +K  + L + + TGACVD +  DQ II+   A   S+V   P++LH QT + +A+QLT AK +V
Sbjct:  300 GVAVGNGSGINLFAETSAGCLLGGSALGKRELKAEEVGQKAADELLQSINTGACVDSYSQDQMIIFMAVARGKSRVRCGPITLHTQTAIHIAHQLTEAKFTV 401          
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Match: UPI001CFC345C (RNA 3'-terminal phosphate cyclase n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC345C)

HSP 1 Score: 79.7 bits (195), Expect = 2.470e-15
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   13 GEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELRTGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKVSVTPEKE 321
            G G  ++VVAET TGC F  S L ++    ++V     E L + L+ G CVDE+  DQ II+   A   SKV + P++LH +T V  A Q+T AK +++  ++
Sbjct:  241 GNGNGIIVVAETSTGCIFAGSSLGKRGVTADKVGTDAAEMLLRNLKHGGCVDEYLQDQLIIFMALANGVSKVRTGPVTLHTETAVHFAQQITKAKFNISKSED 343          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75877.17906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9YYK5_BRALA5.750e-1841.58RTCA protein n=1 Tax=Branchiostoma lanceolatum Tax... [more]
C3YTD9_BRAFL9.860e-1841.58RNA 3'-terminal-phosphate cyclase (ATP) n=2 Tax=Br... [more]
UPI000854D77D1.870e-1642.57RNA 3'-terminal phosphate cyclase n=2 Tax=Ranoidea... [more]
A0A7S3YAG2_9EUKA2.220e-1641.00RNA 3'-terminal-phosphate cyclase (ATP) n=1 Tax=Lo... [more]
A9V0E9_MONBE4.330e-1640.95RNA 3'-terminal-phosphate cyclase (ATP) n=1 Tax=Mo... [more]
UPI0012ECFED96.810e-1635.24RNA 3'-terminal phosphate cyclase n=1 Tax=Anarrhic... [more]
A0A3B3R7D6_9TELE1.290e-1538.10RNA 3'-terminal-phosphate cyclase (ATP) n=1 Tax=Pa... [more]
A0A444TYX8_ACIRT1.290e-1538.10RNA 3'-terminal-phosphate cyclase (ATP) n=5 Tax=Ac... [more]
A0A6L2QB25_COPFO1.670e-1540.20RNA 3'-terminal-phosphate cyclase (ATP) n=1 Tax=Co... [more]
UPI001CFC345C2.470e-1538.83RNA 3'-terminal phosphate cyclase n=1 Tax=Protopte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75877contigM-pyrifera_M_contig75877:24..347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score88.6
Seed ortholog evalue2e-15
Seed eggNOG ortholog7739.XP_002600494.1
Preferred nameRTCA
KEGG koko:K01974
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003963,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0009975,GO:0016874,GO:0016886,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0140098
EggNOG free text desc.RNA-3'-phosphate cyclase activity
EggNOG OGs38D3Q@33154,3BHM8@33208,3D07H@33213,489DM@7711,COG0430@1,KOG3980@2759
EC6.5.1.4
COG Functional cat.A
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.7092328-CDS-M-pyrifera_M_contig75877:23..3471622816657.7092328-CDS-M-pyrifera_M_contig75877:23..347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75877 24..347 +
1692278102.642474-CDS-M-pyrifera_M_contig75877:23..3471692278102.642474-CDS-M-pyrifera_M_contig75877:23..347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75877 24..347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75877.17906.1prot_M-pyrifera_M_contig75877.17906.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75877 24..347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75877.17906.1

>prot_M-pyrifera_M_contig75877.17906.1 ID=prot_M-pyrifera_M_contig75877.17906.1|Name=mRNA_M-pyrifera_M_contig75877.17906.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
GWSAGEGGSVVVVAETDTGCRFGVSGLVEKRAQVEEVAEKVVEGLKKELR
TGACVDEHFADQWIIYALFATSPSKVLSPPLSLHAQTVVQLANQLTSAKV
SVTPEKEG
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mRNA from alignment at M-pyrifera_M_contig75877:24..347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75877.17906.1 ID=mRNA_M-pyrifera_M_contig75877.17906.1|Name=mRNA_M-pyrifera_M_contig75877.17906.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig75877:24..347+ (Macrocystis pyrifera P11B4 male)
GGGTGGAGTGCAGGGGAAGGAGGGAGTGTGGTGGTGGTGGCAGAGACAGA TACGGGATGCAGGTTTGGGGTGAGTGGATTGGTGGAAAAGAGAGCGCAGG TGGAGGAGGTTGCGGAGAAGGTTGTGGAAGGGTTGAAGAAAGAACTGCGA ACTGGAGCTTGTGTGGATGAACATTTCGCAGACCAATGGATCATCTACGC CCTCTTTGCCACCTCTCCTTCCAAAGTACTCTCCCCACCCCTCTCCCTCC ACGCACAAACCGTCGTCCAACTTGCAAACCAACTCACTTCCGCGAAAGTC TCAGTCACACCAGAAAAAGAAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75877:24..347+

>mRNA_M-pyrifera_M_contig75877.17906.1 ID=mRNA_M-pyrifera_M_contig75877.17906.1|Name=mRNA_M-pyrifera_M_contig75877.17906.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig75877:24..347+ (Macrocystis pyrifera P11B4 male)
GGGTGGAGTGCAGGGGAAGGAGGGAGTGTGGTGGTGGTGGCAGAGACAGA
TACGGGATGCAGGTTTGGGGTGAGTGGATTGGTGGAAAAGAGAGCGCAGG
TGGAGGAGGTTGCGGAGAAGGTTGTGGAAGGGTTGAAGAAAGAACTGCGA
ACTGGAGCTTGTGTGGATGAACATTTCGCAGACCAATGGATCATCTACGC
CCTCTTTGCCACCTCTCCTTCCAAAGTACTCTCCCCACCCCTCTCCCTCC
ACGCACAAACCGTCGTCCAACTTGCAAACCAACTCACTTCCGCGAAAGTC
TCAGTCACACCAGAAAAAGAAGGAGGGTGGAGTGCAGGGGAAGGAGGGAG
TGTGGTGGTGGTGGCAGAGACAGATACGGGATGCAGGTTTGGGGTGAGTG
GATTGGTGGAAAAGAGAGCGCAGGTGGAGGAGGTTGCGGAGAAGGTTGTG
GAAGGGTTGAAGAAAGAACTGCGAACTGGAGCTTGTGTGGATGAACATTT
CGCAGACCAATGGATCATCTACGCCCTCTTTGCCACCTCTCCTTCCAAAG
TACTCTCCCCACCCCTCTCCCTCCACGCACAAACCGTCGTCCAACTTGCA
AACCAACTCACTTCCGCGAAAGTCTCAGTCACACCAGAAAAAGAAGGA
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