mRNA_M-pyrifera_M_contig75850.17892.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75850.17892.1
Unique NamemRNA_M-pyrifera_M_contig75850.17892.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: A0A6H5KR75_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KR75_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.210e-23
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    4 PQSRREQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            P+    +AL GCFARRDCP+WADSST +ECH LEEALGG +AVA+ATGSAAYCRFSGNQ+S
Sbjct:  162 PKDTLVEALSGCFARRDCPLWADSSTTRECHNLEEALGGPKAVAEATGSAAYCRFSGNQIS 222
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BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: A0A836CEA2_9STRA (Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.710e-18
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 SPQSRREQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            SP+    +AL GCFARRDCPIWADSST ++C  LE ALGGA A+A ATGSAAY RFSGNQ++
Sbjct:   94 SPRLTLTEALAGCFARRDCPIWADSSTVEQCAALEAALGGAAALAAATGSAAYPRFSGNQIA 155
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BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: UPI000154CA11 (MCG20969, isoform CRA_a n=1 Tax=Mus musculus TaxID=10090 RepID=UPI000154CA11)

HSP 1 Score: 72.4 bits (176), Expect = 8.200e-15
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 SPQSRREQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            SP     Q L+ CF+  DCPIW DSST  +CH+LE A+GGA+A++  TGS AY RF+GNQ++
Sbjct:   53 SPALPLHQQLQSCFSISDCPIWMDSSTTAQCHQLEAAVGGAQALSCLTGSRAYERFTGNQIA 114
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BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: UPI0019176E36 (xylulose kinase isoform X6 n=2 Tax=Rattus norvegicus TaxID=10116 RepID=UPI0019176E36)

HSP 1 Score: 73.6 bits (179), Expect = 8.320e-14
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 SPQSRREQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            SP     Q L+ CF+  DCPIW DSST  +CH+LE A+GGA+A++  TGS AY RF+GNQ+S
Sbjct:  243 SPALLLHQQLQACFSVSDCPIWMDSSTTAQCHQLEAAVGGAQALSCLTGSRAYERFTGNQIS 304
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BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: UPI00006062AC (MCG20969, isoform CRA_b n=1 Tax=Mus musculus TaxID=10090 RepID=UPI00006062AC)

HSP 1 Score: 72.4 bits (176), Expect = 2.110e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 SPQSRREQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            SP     Q L+ CF+  DCPIW DSST  +CH+LE A+GGA+A++  TGS AY RF+GNQ++
Sbjct:  131 SPALPLHQQLQSCFSISDCPIWMDSSTTAQCHQLEAAVGGAQALSCLTGSRAYERFTGNQIA 192
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BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: XYLB_MOUSE (Xylulose kinase n=50 Tax=Tetrapoda TaxID=32523 RepID=XYLB_MOUSE)

HSP 1 Score: 72.4 bits (176), Expect = 2.360e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 SPQSRREQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            SP     Q L+ CF+  DCPIW DSST  +CH+LE A+GGA+A++  TGS AY RF+GNQ++
Sbjct:  131 SPALPLHQQLQSCFSISDCPIWMDSSTTAQCHQLEAAVGGAQALSCLTGSRAYERFTGNQIA 192
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BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: UPI001B350283 (xylulose kinase n=2 Tax=Ochotona TaxID=9977 RepID=UPI001B350283)

HSP 1 Score: 70.9 bits (172), Expect = 8.230e-13
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 SPQSRREQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            SP     Q L+ CF+  DCP+W DSST  +CHRLE A+GG + ++  TGS AY RF+GNQ++
Sbjct:  116 SPNLSLHQQLQACFSVSDCPVWMDSSTTAQCHRLEAAVGGPQTLSCLTGSRAYERFTGNQIA 177
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BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: H0YQL3_TAEGU (Xylulose kinase n=32 Tax=Neognathae TaxID=8825 RepID=H0YQL3_TAEGU)

HSP 1 Score: 70.9 bits (172), Expect = 8.260e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   22 QALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            Q+++GCF+ R+ PIW DSST  +C  LE+ALGGA+ +A+ TGS AY RF+GNQ++
Sbjct:  185 QSVKGCFSVRNSPIWMDSSTASQCRALEKALGGAQHLARVTGSRAYERFTGNQIA 239
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BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: U3JWE7_FICAL (Xylulose kinase n=11 Tax=Neognathae TaxID=8825 RepID=U3JWE7_FICAL)

HSP 1 Score: 70.1 bits (170), Expect = 1.540e-12
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 SPQSRREQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            SP+    Q+L+ CF+  D PIW DSST  +C  LE+A+GGA+ +A+ TGS AY RF+GNQ++
Sbjct:  112 SPELPLHQSLKDCFSVSDSPIWMDSSTASQCRELEKAVGGAQHLARVTGSRAYERFTGNQIA 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Match: A0A196SC15_BLAHN (Xylulose kinase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SC15_BLAHN)

HSP 1 Score: 69.7 bits (169), Expect = 2.100e-12
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   19 EQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGSAAYCRFSGNQVS 186
            ++ L  CF+    PIW DSSTG ECH LEE LGGA+ +A+ TGS AY RF+GNQ++
Sbjct:  121 KEQLENCFSTTLSPIWMDSSTGAECHHLEEVLGGAKNLAEVTGSRAYERFTGNQIA 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75850.17892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR75_9PHAE4.210e-2375.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEA2_9STRA1.710e-1869.35Phosphoribosylformylglycinamidine cyclo-ligase n=1... [more]
UPI000154CA118.200e-1554.84MCG20969, isoform CRA_a n=1 Tax=Mus musculus TaxID... [more]
UPI0019176E368.320e-1456.45xylulose kinase isoform X6 n=2 Tax=Rattus norvegic... [more]
UPI00006062AC2.110e-1354.84MCG20969, isoform CRA_b n=1 Tax=Mus musculus TaxID... [more]
XYLB_MOUSE2.360e-1354.84Xylulose kinase n=50 Tax=Tetrapoda TaxID=32523 Rep... [more]
UPI001B3502838.230e-1351.61xylulose kinase n=2 Tax=Ochotona TaxID=9977 RepID=... [more]
H0YQL3_TAEGU8.260e-1356.36Xylulose kinase n=32 Tax=Neognathae TaxID=8825 Rep... [more]
U3JWE7_FICAL1.540e-1251.61Xylulose kinase n=11 Tax=Neognathae TaxID=8825 Rep... [more]
A0A196SC15_BLAHN2.100e-1257.14Xylulose kinase n=1 Tax=Blastocystis sp. subtype 1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75850contigM-pyrifera_M_contig75850:674..862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D7FW01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.xylulokinase activity
EggNOG OGsCOG1070@1,KOG2531@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.1216886-CDS-M-pyrifera_M_contig75850:673..8621622816657.1216886-CDS-M-pyrifera_M_contig75850:673..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75850 674..862 +
1692278102.3676198-CDS-M-pyrifera_M_contig75850:673..8621692278102.3676198-CDS-M-pyrifera_M_contig75850:673..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75850 674..862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75850.17892.1prot_M-pyrifera_M_contig75850.17892.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75850 674..862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75850.17892.1

>prot_M-pyrifera_M_contig75850.17892.1 ID=prot_M-pyrifera_M_contig75850.17892.1|Name=mRNA_M-pyrifera_M_contig75850.17892.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
SPQSRREQALRGCFARRDCPIWADSSTGKECHRLEEALGGAEAVAKATGS
AAYCRFSGNQVS*
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mRNA from alignment at M-pyrifera_M_contig75850:674..862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75850.17892.1 ID=mRNA_M-pyrifera_M_contig75850.17892.1|Name=mRNA_M-pyrifera_M_contig75850.17892.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig75850:674..862+ (Macrocystis pyrifera P11B4 male)
TCGCCTCAATCGCGACGCGAACAGGCCCTCAGGGGGTGCTTTGCGAGGCG
AGACTGTCCGATTTGGGCGGACAGCAGCACCGGAAAGGAGTGCCACAGGT
TGGAGGAGGCGTTGGGGGGGGCGGAGGCGGTAGCCAAAGCCACCGGTTCC
GCCGCATACTGCCGTTTCAGCGGGAACCAGGTGAGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75850:674..862+

>mRNA_M-pyrifera_M_contig75850.17892.1 ID=mRNA_M-pyrifera_M_contig75850.17892.1|Name=mRNA_M-pyrifera_M_contig75850.17892.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig75850:674..862+ (Macrocystis pyrifera P11B4 male)
TCGCCTCAATCGCGACGCGAACAGGCCCTCAGGGGGTGCTTTGCGAGGCG
AGACTGTCCGATTTGGGCGGACAGCAGCACCGGAAAGGAGTGCCACAGGT
TGGAGGAGGCGTTGGGGGGGGCGGAGGCGGTAGCCAAAGCCACCGGTTCC
GCCGCATACTGCCGTTTCAGCGGGAACCAGGTGAGTTGATCGCCTCAATC
GCGACGCGAACAGGCCCTCAGGGGGTGCTTTGCGAGGCGAGACTGTCCGA
TTTGGGCGGACAGCAGCACCGGAAAGGAGTGCCACAGGTTGGAGGAGGCG
TTGGGGGGGGCGGAGGCGGTAGCCAAAGCCACCGGTTCCGCCGCATACTG
CCGTTTCAGCGGGAACCAGGTGAGTTGA
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