mRNA_M-pyrifera_M_contig75826.17887.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75826.17887.1
Unique NamemRNA_M-pyrifera_M_contig75826.17887.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75826.17887.1 vs. uniprot
Match: A0A5K7XQN8_9BACT (Uncharacterized protein n=1 Tax=Lacipirellula parvula TaxID=2650471 RepID=A0A5K7XQN8_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.090e-6
Identity = 53/172 (30.81%), Postives = 81/172 (47.09%), Query Frame = 1 
Query:    7 PILSGLTTGTTEVTITPTGEVKDVVLSDELIEAFAAAEEGQDGAGGLFALLGIGMDAETVKLAIADSVIQLPAEAQDAGGSWGNTTELEM---GPAKQITEKTFTLEGTEERDGKKLAKITLASEMMLEIDEDNEAEVELEITEQESTGALYFDISAGKTVDSSTETVITLE 513
            P+L  +T     +T+TP GEV +VV+ D + EA     + Q GA  +  L      AE  K  +  +   LP E    G  W +TTE ++   G  K +T  T+  EG  +++G KL K T   ++       +  EV +E+  QES G + F+  AG+   S    V  L+
Sbjct:  122 PLLKAITGNVFIITMTPRGEVTNVVVPDAVTEAL----KNQPGAPQMGELA----SAEGFKKLVGQASFVLP-EGLTVGKEWTSTTESKLPVVGTQKAVT--TYKFEGPIDQEGTKLEKFTAKVDISF-----SGGEVTVEVPSQESNGEILFNAEAGRLEQSKITQVTNLK 277
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75826.17887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5K7XQN8_9BACT3.090e-630.81Uncharacterized protein n=1 Tax=Lacipirellula parv... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75826contigM-pyrifera_M_contig75826:456..1010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size555
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.902088-CDS-M-pyrifera_M_contig75826:455..10101622816656.902088-CDS-M-pyrifera_M_contig75826:455..1010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75826 456..1010 -
1692278102.2802813-CDS-M-pyrifera_M_contig75826:455..10101692278102.2802813-CDS-M-pyrifera_M_contig75826:455..1010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75826 456..1010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75826.17887.1prot_M-pyrifera_M_contig75826.17887.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75826 456..1010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75826.17887.1

>prot_M-pyrifera_M_contig75826.17887.1 ID=prot_M-pyrifera_M_contig75826.17887.1|Name=mRNA_M-pyrifera_M_contig75826.17887.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
MGPILSGLTTGTTEVTITPTGEVKDVVLSDELIEAFAAAEEGQDGAGGLF
ALLGIGMDAETVKLAIADSVIQLPAEAQDAGGSWGNTTELEMGPAKQITE
KTFTLEGTEERDGKKLAKITLASEMMLEIDEDNEAEVELEITEQESTGAL
YFDISAGKTVDSSTETVITLEGESPMGEIIMERTV
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mRNA from alignment at M-pyrifera_M_contig75826:456..1010-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75826.17887.1 ID=mRNA_M-pyrifera_M_contig75826.17887.1|Name=mRNA_M-pyrifera_M_contig75826.17887.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig75826:456..1010- (Macrocystis pyrifera P11B4 male)
ATGGGCCCCATTCTTTCGGGTCTCACCACCGGAACGACCGAAGTGACGAT
TACCCCCACGGGTGAAGTCAAAGACGTCGTCCTCTCCGACGAACTTATCG
AAGCGTTCGCTGCCGCCGAAGAAGGTCAAGATGGTGCTGGTGGATTATTC
GCCCTGCTGGGTATTGGAATGGACGCCGAAACTGTGAAGTTGGCCATTGC
CGATTCGGTAATTCAACTGCCCGCCGAAGCACAAGATGCTGGTGGATCTT
GGGGTAACACCACCGAGTTGGAAATGGGTCCCGCCAAGCAAATCACCGAG
AAGACCTTCACCCTCGAAGGTACCGAAGAGCGCGACGGCAAGAAGTTGGC
CAAGATTACGTTGGCCAGCGAGATGATGCTCGAGATCGACGAAGACAACG
AAGCCGAAGTCGAACTCGAAATCACCGAGCAAGAATCGACCGGTGCTCTG
TACTTCGATATCTCAGCCGGTAAGACCGTTGATTCTTCGACCGAGACCGT
GATCACGCTGGAAGGCGAGTCGCCCATGGGCGAGATCATCATGGAGCGAA
CGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75826:456..1010-

>mRNA_M-pyrifera_M_contig75826.17887.1 ID=mRNA_M-pyrifera_M_contig75826.17887.1|Name=mRNA_M-pyrifera_M_contig75826.17887.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig75826:456..1010- (Macrocystis pyrifera P11B4 male)
ATGGGCCCCATTCTTTCGGGTCTCACCACCGGAACGACCGAAGTGACGAT
TACCCCCACGGGTGAAGTCAAAGACGTCGTCCTCTCCGACGAACTTATCG
AAGCGTTCGCTGCCGCCGAAGAAGGTCAAGATGGTGCTGGTGGATTATTC
GCCCTGCTGGGTATTGGAATGGACGCCGAAACTGTGAAGTTGGCCATTGC
CGATTCGGTAATTCAACTGCCCGCCGAAGCACAAGATGCTGGTGGATCTT
GGGGTAACACCACCGAGTTGGAAATGGGTCCCGCCAAGCAAATCACCGAG
AAGACCTTCACCCTCGAAGGTACCGAAGAGCGCGACGGCAAGAAGTTGGC
CAAGATTACGTTGGCCAGCGAGATGATGCTCGAGATCGACGAAGACAACG
AAGCCGAAGTCGAACTCGAAATCACCGAGCAAGAATCGACCGGTGCTCTG
TACTTCGATATCTCAGCCGGTAAGACCGTTGATTCTTCGACCGAGACCGT
GATCACGCTGGAAGGCGAGTCGCCCATGGGCGAGATCATCATGGAGCGAA
CGGTCATGGGCCCCATTCTTTCGGGTCTCACCACCGGAACGACCGAAGTG
ACGATTACCCCCACGGGTGAAGTCAAAGACGTCGTCCTCTCCGACGAACT
TATCGAAGCGTTCGCTGCCGCCGAAGAAGGTCAAGATGGTGCTGGTGGAT
TATTCGCCCTGCTGGGTATTGGAATGGACGCCGAAACTGTGAAGTTGGCC
ATTGCCGATTCGGTAATTCAACTGCCCGCCGAAGCACAAGATGCTGGTGG
ATCTTGGGGTAACACCACCGAGTTGGAAATGGGTCCCGCCAAGCAAATCA
CCGAGAAGACCTTCACCCTCGAAGGTACCGAAGAGCGCGACGGCAAGAAG
TTGGCCAAGATTACGTTGGCCAGCGAGATGATGCTCGAGATCGACGAAGA
CAACGAAGCCGAAGTCGAACTCGAAATCACCGAGCAAGAATCGACCGGTG
CTCTGTACTTCGATATCTCAGCCGGTAAGACCGTTGATTCTTCGACCGAG
ACCGTGATCACGCTGGAAGGCGAGTCGCCCATGGGCGAGATCATCATGGA
GCGAACGGTC
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