mRNA_M-pyrifera_M_contig7580.17879.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7580.17879.1
Unique NamemRNA_M-pyrifera_M_contig7580.17879.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7580.17879.1 vs. uniprot
Match: A0A6H5L7V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.420e-6
Identity = 58/102 (56.86%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:  724 GAAVAAADGTAPADDAKTRRANRLKRARLMTGHYKLAVMEHSSGQENAADGXXXXXXXXXXXVVLGETASGVGPGPSHDGGVGGSDASSSAGGLSDFDEESS 1029
            GA  +AA+G   ADD +TRRANRLKR RLM+GHYKLAV+EHSS Q++ +  XXXXXXXXXXX                DG  GG+D  SSA GLSD D  SS
Sbjct:  702 GAPSSAAEG-GRADDEETRRANRLKRMRLMSGHYKLAVLEHSSEQQHESAXXXXXXXXXXXXXXXXXXXXXX-----XDGDCGGTDDHSSADGLSDLDYTSS 797
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7580.17879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7V8_9PHAE3.420e-656.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7580contigM-pyrifera_M_contig7580:2961..3992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1032
Cds size1032
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.4975743-CDS-M-pyrifera_M_contig7580:2960..39921622816656.4975743-CDS-M-pyrifera_M_contig7580:2960..3992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7580 2961..3992 +
1692278102.053488-CDS-M-pyrifera_M_contig7580:2960..39921692278102.053488-CDS-M-pyrifera_M_contig7580:2960..3992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7580 2961..3992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7580.17879.1prot_M-pyrifera_M_contig7580.17879.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7580 2961..3992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7580.17879.1

>prot_M-pyrifera_M_contig7580.17879.1 ID=prot_M-pyrifera_M_contig7580.17879.1|Name=mRNA_M-pyrifera_M_contig7580.17879.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=344bp
GATATAAAAGPNDPTVSAGGASEIARSTGGGVRDAPGGRATSSPSPPPHT
RQHSVPTSAGAAGANPGAPEDFHQGVVGKSGEASGAVTEGEGGGVFEGNG
DRRDLPARPEIHEMGLDERLADHYAGGASSGGITASNGRTAAAAAAAEDD
GLSRVGGRGANAASTGRSSRNSVAAALGTSTELPFGASGEGVGDGGEGST
ARSYSSSSEDGGGSGGAAAGGDEGGLMMRGVSVSLPLTGLDGAAVAAADG
TAPADDAKTRRANRLKRARLMTGHYKLAVMEHSSGQENAADGGQQQQEQQ
QGGVVLGETASGVGPGPSHDGGVGGSDASSSAGGLSDFDEESSG
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mRNA from alignment at M-pyrifera_M_contig7580:2961..3992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7580.17879.1 ID=mRNA_M-pyrifera_M_contig7580.17879.1|Name=mRNA_M-pyrifera_M_contig7580.17879.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig7580:2961..3992+ (Macrocystis pyrifera P11B4 male)
GGGGCTACTGCTACTGCTGCCGCGGCTGGGCCGAATGATCCCACCGTGTC
CGCAGGCGGCGCTTCGGAGATCGCACGGTCAACCGGTGGAGGCGTGCGTG
ATGCGCCGGGGGGCAGGGCTACTTCATCCCCATCCCCGCCCCCTCACACC
CGCCAACATTCGGTGCCAACTTCAGCCGGTGCTGCTGGGGCCAACCCCGG
AGCCCCTGAAGACTTTCACCAAGGTGTGGTAGGAAAATCTGGTGAGGCCT
CCGGTGCGGTCACGGAAGGAGAAGGAGGCGGTGTGTTTGAGGGGAACGGG
GACCGCCGAGACTTGCCGGCGCGGCCGGAAATACACGAGATGGGTCTGGA
CGAAAGGTTGGCGGATCACTATGCCGGTGGCGCGTCGTCGGGAGGCATTA
CCGCCTCGAATGGCCGCACTGCTGCTGCTGCTGCTGCTGCGGAGGATGAC
GGTTTAAGCAGGGTTGGGGGGAGGGGAGCGAATGCCGCGTCTACTGGCCG
CAGCAGCAGGAACAGCGTCGCAGCGGCCCTTGGAACGAGCACTGAGTTAC
CATTTGGTGCTTCTGGGGAGGGAGTCGGTGACGGTGGAGAGGGTAGTACG
GCGAGGTCGTACAGCTCTTCCTCGGAAGATGGTGGTGGTAGTGGTGGTGC
TGCTGCTGGTGGAGACGAAGGTGGGCTGATGATGCGGGGAGTGTCGGTGT
CGTTGCCCCTGACGGGCTTGGACGGTGCCGCTGTGGCGGCGGCAGACGGT
ACTGCGCCTGCTGACGACGCTAAGACTAGGCGGGCGAATCGTCTCAAGCG
GGCGCGGCTCATGACGGGCCACTACAAGCTGGCCGTCATGGAGCATTCCT
CGGGCCAGGAGAACGCGGCGGACGGCGGCCAGCAGCAGCAGGAGCAGCAG
CAGGGCGGTGTGGTGTTGGGAGAGACGGCTTCCGGCGTGGGCCCCGGGCC
GAGCCACGATGGCGGGGTTGGCGGCAGTGACGCCTCGTCTTCTGCGGGTG
GTCTGTCGGACTTCGATGAAGAGAGCAGCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7580:2961..3992+

>mRNA_M-pyrifera_M_contig7580.17879.1 ID=mRNA_M-pyrifera_M_contig7580.17879.1|Name=mRNA_M-pyrifera_M_contig7580.17879.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2064bp|location=Sequence derived from alignment at M-pyrifera_M_contig7580:2961..3992+ (Macrocystis pyrifera P11B4 male)
GGGGCTACTGCTACTGCTGCCGCGGCTGGGCCGAATGATCCCACCGTGTC
CGCAGGCGGCGCTTCGGAGATCGCACGGTCAACCGGTGGAGGCGTGCGTG
ATGCGCCGGGGGGCAGGGCTACTTCATCCCCATCCCCGCCCCCTCACACC
CGCCAACATTCGGTGCCAACTTCAGCCGGTGCTGCTGGGGCCAACCCCGG
AGCCCCTGAAGACTTTCACCAAGGTGTGGTAGGAAAATCTGGTGAGGCCT
CCGGTGCGGTCACGGAAGGAGAAGGAGGCGGTGTGTTTGAGGGGAACGGG
GACCGCCGAGACTTGCCGGCGCGGCCGGAAATACACGAGATGGGTCTGGA
CGAAAGGTTGGCGGATCACTATGCCGGTGGCGCGTCGTCGGGAGGCATTA
CCGCCTCGAATGGCCGCACTGCTGCTGCTGCTGCTGCTGCGGAGGATGAC
GGTTTAAGCAGGGTTGGGGGGAGGGGAGCGAATGCCGCGTCTACTGGCCG
CAGCAGCAGGAACAGCGTCGCAGCGGCCCTTGGAACGAGCACTGAGTTAC
CATTTGGTGCTTCTGGGGAGGGAGTCGGTGACGGTGGAGAGGGTAGTACG
GCGAGGTCGTACAGCTCTTCCTCGGAAGATGGTGGTGGTAGTGGTGGTGC
TGCTGCTGGTGGAGACGAAGGTGGGCTGATGATGCGGGGAGTGTCGGTGT
CGTTGCCCCTGACGGGCTTGGACGGTGCCGCTGTGGCGGCGGCAGACGGT
ACTGCGCCTGCTGACGACGCTAAGACTAGGCGGGCGAATCGTCTCAAGCG
GGCGCGGCTCATGACGGGCCACTACAAGCTGGCCGTCATGGAGCATTCCT
CGGGCCAGGAGAACGCGGCGGACGGCGGCCAGCAGCAGCAGGAGCAGCAG
CAGGGCGGTGTGGTGTTGGGAGAGACGGCTTCCGGCGTGGGCCCCGGGCC
GAGCCACGATGGCGGGGTTGGCGGCAGTGACGCCTCGTCTTCTGCGGGTG
GTCTGTCGGACTTCGATGAAGAGAGCAGCGGCGGGGCTACTGCTACTGCT
GCCGCGGCTGGGCCGAATGATCCCACCGTGTCCGCAGGCGGCGCTTCGGA
GATCGCACGGTCAACCGGTGGAGGCGTGCGTGATGCGCCGGGGGGCAGGG
CTACTTCATCCCCATCCCCGCCCCCTCACACCCGCCAACATTCGGTGCCA
ACTTCAGCCGGTGCTGCTGGGGCCAACCCCGGAGCCCCTGAAGACTTTCA
CCAAGGTGTGGTAGGAAAATCTGGTGAGGCCTCCGGTGCGGTCACGGAAG
GAGAAGGAGGCGGTGTGTTTGAGGGGAACGGGGACCGCCGAGACTTGCCG
GCGCGGCCGGAAATACACGAGATGGGTCTGGACGAAAGGTTGGCGGATCA
CTATGCCGGTGGCGCGTCGTCGGGAGGCATTACCGCCTCGAATGGCCGCA
CTGCTGCTGCTGCTGCTGCTGCGGAGGATGACGGTTTAAGCAGGGTTGGG
GGGAGGGGAGCGAATGCCGCGTCTACTGGCCGCAGCAGCAGGAACAGCGT
CGCAGCGGCCCTTGGAACGAGCACTGAGTTACCATTTGGTGCTTCTGGGG
AGGGAGTCGGTGACGGTGGAGAGGGTAGTACGGCGAGGTCGTACAGCTCT
TCCTCGGAAGATGGTGGTGGTAGTGGTGGTGCTGCTGCTGGTGGAGACGA
AGGTGGGCTGATGATGCGGGGAGTGTCGGTGTCGTTGCCCCTGACGGGCT
TGGACGGTGCCGCTGTGGCGGCGGCAGACGGTACTGCGCCTGCTGACGAC
GCTAAGACTAGGCGGGCGAATCGTCTCAAGCGGGCGCGGCTCATGACGGG
CCACTACAAGCTGGCCGTCATGGAGCATTCCTCGGGCCAGGAGAACGCGG
CGGACGGCGGCCAGCAGCAGCAGGAGCAGCAGCAGGGCGGTGTGGTGTTG
GGAGAGACGGCTTCCGGCGTGGGCCCCGGGCCGAGCCACGATGGCGGGGT
TGGCGGCAGTGACGCCTCGTCTTCTGCGGGTGGTCTGTCGGACTTCGATG
AAGAGAGCAGCGGC
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