mRNA_M-pyrifera_M_contig758.17876.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 347 bits (890), Expect = 2.920e-114 Identity = 192/274 (70.07%), Postives = 219/274 (79.93%), Query Frame = 1
Query: 592 MLTFHKRMSIVTDTLSRASTHLDHFLFVIFLVVMVFANLTWLLVGSGTVEFSTLGEAWRSVVRVTLGESENFYPQILEAQPTVGPVIVVLYQVLGVVLLLNVVIAVLLEAYRGVVGSMYDEDTIFQSLTAFIGMTLCMMTARIRWFCSYIRWWLSGGKSRRERKPSLKMVLQGSTGVYGVDGRPVLMVRKSDDPSRQSSQRQLSYNCRRYITVTEMQALIEAAPVPAFVADRLVRKIVNHWVFRSTEKSTREKMAA-SYSGGYGASSGSRDGSL 1410
MLTFHKRMSIVTDTLSRASTHL+HFLFV FLV++ FA LTWLLVGS T EFSTL +AWRSV+R++LGESENFYPQIL+AQPTVGPV+VVLYQVLGVVLLLNVVIA+LLEAYRGV M+ EDTIFQS AF+GM+ C +T RIRW + IRW L G R +PSLK+ LQGSTGV GVDGRPV+MVR+ + S RQLS+NC RYITVTEMQALIEA PVPA VADRLVRKIV+ WVFRS E+ T + S SG YG +G +G +
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVASGMHGEDTIFQSFIAFVGMSWCSLTTRIRWATACIRWRLGG--RRNTSRPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILG-RQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGSFQSPSSSGEYGNGTGGGNGGV 271
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI) HSP 1 Score: 209 bits (531), Expect = 1.380e-62 Identity = 111/135 (82.22%), Postives = 119/135 (88.15%), Query Frame = 1
Query: 592 MLTFHKRMSIVTDTLSRASTHLDHFLFVIFLVVMVFANLTWLLVGSGTVEFSTLGEAWRSVVRVTLGESENFYPQILEAQPTVGPVIVVLYQVLGVVLLLNVVIAVLLEAYRGVVGSMYDEDTIFQSLTAFIGMT 996
MLTFHKRMSIVTDTLSRASTHLDHFLFV FLV++ FA LTWLLVGS T EFSTL EAW SV R++LGESENFYPQIL+AQPTVGPV VVLYQVLGVVLLLNVVIA+ LEAYRGVV M EDTIFQS AF+GM+
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTIFQSFIAFVGMS 135
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI) HSP 1 Score: 213 bits (543), Expect = 1.250e-59 Identity = 109/198 (55.05%), Postives = 138/198 (69.70%), Query Frame = 1
Query: 1 LNMGLCTLLAMEDLDVIPPEEVKSVSVQLITYNGNQKSAYGSIFIGFNFDDGGEITVTESIAAYILKNKIAGSGDRARRISTLVFVCIFIGMARYDTKKWFRLRRAKAKRNRCHCVCGFIFFVLIFLNIIMWMVWSFALTSTISFETDFQD-SPDGTPALDSIAADIVALYEVALFVSAYSFIFLLTTMAGLYRWIFK 591
LN G CTLL MEDLDVIP +EV+SV+VQL+TYNGNQ SA+GSI IGF FD GGE+ E + AYIL DR R I L+FVC+ + M R+DTKKW+R R AKA+RN+CHC CGF FF LI LN++MW+ W+ +L I+F+ Q S + + ++ I+AL E ALF + IFLLTT+AGLYRWIF+
Sbjct: 329 LNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRARHAKARRNKCHCCCGFTFFTLIILNVLMWLGWA-SLGKVIAFDVVLQGTSSEEDSVMAALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 525
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 178 bits (452), Expect = 1.370e-50 Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 1
Query: 592 MLTFHKRMSIVTDTLSRASTHLDHFLFVIFLVVMVFANLTWLLVGSGTVEFSTLGEAWRSVVRVTLGESENFYPQILEAQPTVGPVIVVLYQVLGVVLLLNVVIAVLLEAY 924
MLTFHKRMSIVTDTLSRASTHLDHFLFV FLV++ FA LTWLLVGS T EFSTL +AW+SV R++LGESENFYPQIL+AQPTVGPV+VVLYQVLGVVLLLNVVIA+LLE +
Sbjct: 32 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE) HSP 1 Score: 132 bits (333), Expect = 3.220e-33 Identity = 82/161 (50.93%), Postives = 100/161 (62.11%), Query Frame = 1
Query: 427 ISFETDFQD-SPDGTPALDSIAADIVALYEVALFVSAYSFIFLLTTMAGLYRWIFKMLTFHKRMSIVTDTLSRASTHLDHFLFVIFL--------------------------VVMVFANLTWLLVGSGTVEFSTLGEAWRSVVRVTLGESENFYPQILEA 828
++F+ QD S + L ++ I+AL E LF + IFLLTT+AGLY WIF+M TFHKRMSIV DTLSRASTHL FLFV FL VV+ FA LT+LLVGS T E STL +AWRSV+R++ GES+N YPQIL+A
Sbjct: 1 MAFDVVLQDTSSEADSVLGALTGPILALQEAELFSWSLYIIFLLTTLAGLYPWIFQMFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILDA 161
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.820e-27 Identity = 83/193 (43.01%), Postives = 104/193 (53.89%), Query Frame = 1
Query: 916 EAYRGVVGSMYDEDTIFQSLTAFIGMTL--------------------CMMTARIRWFCSYIRWWLSGGKSRRE----RKPSLKMVLQGSTGVYGVDGRPVLMVRKSDDPSRQSSQRQLSYNCRRYITVTEMQ---ALIEAAPVPAFVADRLVRKIVNHWVFRSTEKSTRE-KMAASYSGGYGASSGSRDGSL 1410
+AYRGVV M EDTI S AF+GM+ C++ IRW +YIRW L+G ++ R+PSL+M LQGSTGV GVDGRPV+MVR + S T+ Q ALIEA PVPA VA RLVRKIV+ WVFRS E+ T + S SG YG+ +G +G +
Sbjct: 13 KAYRGVVSGMRGEDTILPSFIAFVGMSWWVLHSRQTARQPEQILTSVSCVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESS----------------TILGRQLPAALIEAFPVPARVAGRLVRKIVHEWVFRSDERITGGVSQSPSSSGEYGSGTGGGNGGV 189
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI) HSP 1 Score: 112 bits (279), Expect = 8.810e-23 Identity = 96/348 (27.59%), Postives = 175/348 (50.29%), Query Frame = 1
Query: 1 LNMGLCTLLAMEDLDVIPPEEVKSVSVQLITYNGNQKSAYGSIFIGFNFDDGGEITVTESIAAYILKNKIAGS-GDRARRISTLVF-VCIFIGMARYDTKKWFRLR--RAKAKRNRCHCV------------CGFIFFVLIFLNIIMWMVWSFALTSTISFETDFQDSPDGTPALDSIAADIVALYEVALFVSAYSFIFLLTTMAGLYRWIFKMLTFHKRMSIVTDTLSRASTHLDHFLFVIFLVVMVFANLTWLLVGSGTVEFSTLGEAWRSVVRVTLGESENFYPQILEAQPTVGPVIVVLYQVLGVVLLLNVVIAVLLEAYRGVV--GSMYDEDTIFQSLTAFIG 990
LN LC +LA+ + + V+SVS++ TYNG + + I F GGE+ + S+ + + S R I+ F + + I + + + W +R R + + H C F++ +++++N+ + F L T+S+ + + L +A + A+ S + GL R +F ML FH R+S+VTD L+ ++ HL HF + F+VV V++NL W++ G ++ F+T +++ ++ R+ LGE +N YP ++E +I+V YQ L +LLLN+VI++LL+A++ V S+ DT++Q++ +G
Sbjct: 41 LNFNLCGMLAILGGPDVMTDAVRSVSLRFNTYNGQCDGLFSFVDITALFTLGGEVKMVTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMSLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAA-KFELIPTLSYNNASEQVRAFSEELALVALERWKRDAAAVAGSIF----------GLTR-LFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLG 376
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: A0A6H5JEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ3_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 2.310e-14 Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query: 1 LNMGLCTLLAMEDLDVIPPEEVKSVSVQLITYNGNQKSAYGSIFIGFNFD 150
LN G CTLL MEDLDVIP EV+SV+VQL+TYNGNQ SA+GSI +GF FD
Sbjct: 59 LNFGYCTLLVMEDLDVIPRHEVRSVNVQLVTYNGNQGSAFGSINLGFTFD 108
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: A0A8J5X0G5_DIALT (PKD_channel domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X0G5_DIALT) HSP 1 Score: 74.3 bits (181), Expect = 2.220e-10 Identity = 90/317 (28.39%), Postives = 150/317 (47.32%), Query Frame = 1
Query: 4 NMGLCTLLAMEDLDVIPPEEVKSVSVQLITYNGNQKSAYGSIFIGFNFDDGGEITVTESIAAYILKNKIAGSGDRARRISTLVFVCIFIGMARYDTKKWFRLRRAKAKRNRCHCVCGFIFFVLIFLNIIMWMVWSFALTSTISFETDFQDSPDGTPALDSIAA-----DIVALYEVAL--FVSAYSFIFLLTTMAGLYRWIFKMLTFHKRMSIVTDTLSRASTHLDHFLFVIFLVVMVFANLTWLLVGSGTVEFSTLGEAWRSVVRVTLGESENFYPQILEAQPTVGPVIVVLYQVLGVVLLLNVVIAVLLEAYRGV 933
+ GLC L D + K V V+ TYNG+ + + + ++ GG V L+N A D AR V+V + +G T R + + V + L LNI++W+ FA+ DF + GT A DS + + L E A FV+ ++ + + M +R +FK L FH++ S+VT TL RA L HFL V +V++++A + + ++G ++TLG+A S+ + + + + I++ P VGPV Y +L ++L+NV++A+LL+AY V
Sbjct: 345 DQGLCQLETARDFGWVDTG-TKRVQVEWATYNGHFE-LWTLTRLQVSWGLGGNPEVDLETLTAPLRNLYARPADAARAAFEGVYV-LLLGYYMLQTAWHVRTLGLGSLLSGWGLV-DLAAYALAVLNIVLWV--KFAVEGAQYRMPDFVEK-QGTYAPDSHELWGEFMENLGLLETAEDDFVN-FTIVQSVLLMVLTFR-LFKFLAFHQQFSLVTATLLRAGASLAHFLVVFAIVLVMYAFVGFNMLGHKLERYNTLGKAINSMCSMLVFDDTVSFADIMDVAPLVGPVFYWSYFILSSLMLINVLLAILLDAYASV 652
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Match: H3H0N9_PHYRM (PKD_channel domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0N9_PHYRM) HSP 1 Score: 61.6 bits (148), Expect = 2.110e-6 Identity = 81/321 (25.23%), Postives = 144/321 (44.86%), Query Frame = 1
Query: 58 EEVKSVSVQLITYNGNQKSAYGSIFIGFNFDDGGEITVTES----IAAYILKNKIAGSGDRARRISTLVFVCIFIGMARYDTKKWFRLRRAKAK-RNRCHCVCGFIFFVLIFLNIIMWMVWSFAL--TSTISFETDFQDSPDGTPALDSIAADIVALYEVALFVSAYSFIFLLTTMAGLYRW---------IFKMLTFHKRMSIVTDTLSRASTHLDHFLFVIFLVVMVFANLTWLLVGSGTVEFSTLGEAWRSVVRVTLGESENFYPQILEAQPTVGPVIVVLYQ---VLGVVLLLNVVIAVLLEAYRGVVGSMYDEDTI 963
+ +++ V ++TYNG + S+YG + F +GG I ++ S I+A LK RA VC + +A + W R A +N H F+ + L + ++VW + TS+ SF T+ + A A+D V +A +S+ I LTT+ + I FH R+++++ T+S + FL V +VV+ FA + G EFS++ + S + + G NF +E + PV ++ Y ++ ++LLN+++A++L+ Y V Y++ TI
Sbjct: 212 DSTETLEVTIVTYNG-EISSYGVTKLTLEFQEGGFINLSSSSTGAISAPYLKT-------RAFVADATFGVCFVLVLAGQLVRLWQNRRHLGAHLKNFWH----FVDYAATVLVVAFYVVWGLIVSTTSSSSFRTNIASF---SSASADWASDDVMAESLASIISSLEHIGRLTTVLRILATVTILFLGIRILDTFRFHPRLNVLSHTISSSLHKFASFLVVFMIVVVTFALSGHFIFGDRADEFSSIKASLESCINILFG---NFDYSAVEG--LIVPVSIIYYWGYLIVSNLILLNMMLAIVLDTYEEVSEEAYNDKTI 512 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig758.17876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig758.17876.1 >prot_M-pyrifera_M_contig758.17876.1 ID=prot_M-pyrifera_M_contig758.17876.1|Name=mRNA_M-pyrifera_M_contig758.17876.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=468bp MGLCTLLAMEDLDVIPPEEVKSVSVQLITYNGNQKSAYGSIFIGFNFDDGback to top mRNA from alignment at M-pyrifera_M_contig758:164..24018+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig758.17876.1 ID=mRNA_M-pyrifera_M_contig758.17876.1|Name=mRNA_M-pyrifera_M_contig758.17876.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=23855bp|location=Sequence derived from alignment at M-pyrifera_M_contig758:164..24018+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig758:164..24018+ >mRNA_M-pyrifera_M_contig758.17876.1 ID=mRNA_M-pyrifera_M_contig758.17876.1|Name=mRNA_M-pyrifera_M_contig758.17876.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2808bp|location=Sequence derived from alignment at M-pyrifera_M_contig758:164..24018+ (Macrocystis pyrifera P11B4 male)back to top |