mRNA_M-pyrifera_M_contig75762.17869.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75762.17869.1
Unique NamemRNA_M-pyrifera_M_contig75762.17869.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75762.17869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75762contigM-pyrifera_M_contig75762:403..825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.8621242-CDS-M-pyrifera_M_contig75762:402..8251622816655.8621242-CDS-M-pyrifera_M_contig75762:402..825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75762 403..825 -
1692278101.6700263-CDS-M-pyrifera_M_contig75762:402..8251692278101.6700263-CDS-M-pyrifera_M_contig75762:402..825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75762 403..825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75762.17869.1prot_M-pyrifera_M_contig75762.17869.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75762 403..825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75762.17869.1

>prot_M-pyrifera_M_contig75762.17869.1 ID=prot_M-pyrifera_M_contig75762.17869.1|Name=mRNA_M-pyrifera_M_contig75762.17869.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
LVIFAGAAFQQWQRRADRSIGSWAVWIWFLGPPATTTLVSLVEPLLWHRM
LIGSLPATFVVAGMFLSDLRWRLPALLATVAIVLLGIVRTESFATADLWE
FEDLAAELRTRAEPGDVLAFTHPWELVGLDYYFRDETDRFV
back to top

mRNA from alignment at M-pyrifera_M_contig75762:403..825-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75762.17869.1 ID=mRNA_M-pyrifera_M_contig75762.17869.1|Name=mRNA_M-pyrifera_M_contig75762.17869.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig75762:403..825- (Macrocystis pyrifera P11B4 male)
CTCGTCATCTTCGCCGGTGCGGCGTTTCAACAGTGGCAACGGCGGGCCGA
TCGCAGCATCGGTTCATGGGCCGTGTGGATCTGGTTCCTCGGCCCCCCGG
CCACCACCACCTTGGTGTCGTTGGTCGAACCGCTGCTGTGGCACCGGATG
CTGATCGGATCGCTCCCGGCGACCTTCGTGGTCGCCGGCATGTTTCTGTC
GGACCTGCGGTGGCGGCTTCCCGCTCTGTTGGCAACCGTGGCGATCGTGC
TGCTGGGCATCGTCCGAACCGAGAGCTTCGCCACCGCAGACCTATGGGAG
TTCGAAGACCTTGCCGCAGAACTGCGAACGCGTGCTGAACCAGGTGACGT
CTTGGCCTTCACCCATCCGTGGGAACTGGTGGGACTCGACTACTACTTCC
GTGACGAGACCGATCGTTTCGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig75762:403..825-

>mRNA_M-pyrifera_M_contig75762.17869.1 ID=mRNA_M-pyrifera_M_contig75762.17869.1|Name=mRNA_M-pyrifera_M_contig75762.17869.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig75762:403..825- (Macrocystis pyrifera P11B4 male)
CTCGTCATCTTCGCCGGTGCGGCGTTTCAACAGTGGCAACGGCGGGCCGA
TCGCAGCATCGGTTCATGGGCCGTGTGGATCTGGTTCCTCGGCCCCCCGG
CCACCACCACCTTGGTGTCGTTGGTCGAACCGCTGCTGTGGCACCGGATG
CTGATCGGATCGCTCCCGGCGACCTTCGTGGTCGCCGGCATGTTTCTGTC
GGACCTGCGGTGGCGGCTTCCCGCTCTGTTGGCAACCGTGGCGATCGTGC
TGCTGGGCATCGTCCGAACCGAGAGCTTCGCCACCGCAGACCTATGGGAG
TTCGAAGACCTTGCCGCAGAACTGCGAACGCGTGCTGAACCAGGTGACGT
CTTGGCCTTCACCCATCCGTGGGAACTGGTGGGACTCGACTACTACTTCC
GTGACGAGACCGATCGTTTCGTGCTCGTCATCTTCGCCGGTGCGGCGTTT
CAACAGTGGCAACGGCGGGCCGATCGCAGCATCGGTTCATGGGCCGTGTG
GATCTGGTTCCTCGGCCCCCCGGCCACCACCACCTTGGTGTCGTTGGTCG
AACCGCTGCTGTGGCACCGGATGCTGATCGGATCGCTCCCGGCGACCTTC
GTGGTCGCCGGCATGTTTCTGTCGGACCTGCGGTGGCGGCTTCCCGCTCT
GTTGGCAACCGTGGCGATCGTGCTGCTGGGCATCGTCCGAACCGAGAGCT
TCGCCACCGCAGACCTATGGGAGTTCGAAGACCTTGCCGCAGAACTGCGA
ACGCGTGCTGAACCAGGTGACGTCTTGGCCTTCACCCATCCGTGGGAACT
GGTGGGACTCGACTACTACTTCCGTGACGAGACCGATCGTTTCGTG
back to top