mRNA_M-pyrifera_M_contig7576.17867.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7576.17867.1
Unique NamemRNA_M-pyrifera_M_contig7576.17867.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: A0A6H5JKU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU4_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 8.170e-45
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = 1
Query:   22 LPLFGLDVPKNRVHFVDTPERLQRMGETLRKSVVMSIDTETQPSFKVGEWHPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFASPQVLKL 330
            LPLFGLD+P++RVH VDTPE ++     L +SV+MS+DTETQPSF VGEWHPTSLLQ+ATRDA GEEDVLVIDLLSLKDGL LP+ L+EAL+GPF SP V+KL
Sbjct:  220 LPLFGLDIPEDRVHVVDTPEGVRDAAAVLGRSVLMSVDTETQPSFAVGEWHPTSLLQVATRDANGEEDVLVIDLLSLKDGLFLPESLSEALSGPFGSPSVVKL 322          
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: D8LQB4_ECTSI (3\'-5\' exonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.040e-31
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1
Query:  124 MSIDTETQPSFKVGEWHPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFASPQVLKL 330
            MSIDTETQPSF VGEWHPTSLLQ+ATRDA GEEDVLVIDLLSLKDGL LP+ L+EAL+GPF SP V+KL
Sbjct:    1 MSIDTETQPSFAVGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKL 69          
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: A0A5D6YC74_9STRA (3'-5' exonuclease domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC74_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.180e-17
Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   25 PLFGLDVPKNRVHFVDTPERLQRMGETLRKSVVMSIDTETQPSFKVGEW-HPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFASPQVLKL 330
            P + +D     +HFV + +  QR    LR ++VM  DTET+P F+ G   +P SLLQIA RDARG EDV V+DLL+LK     P++ N ALA  F S +VLKL
Sbjct:   45 PAYSVDATS--IHFVASTDEWQRCVVRLRAAIVMGFDTETKPEFRAGRARNPCSLLQIAMRDARGAEDVFVLDLLALK-----PKLYNAALADIFLSKRVLKL 140          
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: A0A024TW10_9STRA (3'-5' exonuclease domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW10_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.440e-14
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   58 VHFVDTPERLQRMGETLRKSVVMSIDTETQPSFK-VGEWHPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFASPQVLKL 330
            V F+ TP +L    E LR +VV+ +DTET+P FK     +PTSLLQ+A RDA G EDV + DLL+L      P   N+ LA  F +P +LKL
Sbjct:   56 VQFLHTPSQLAACHERLRTAVVVGLDTETKPEFKKTAIPNPTSLLQVAVRDAHGAEDVFLFDLLALT-----PSHYNDMLAELFLNPSILKL 142          
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: A0A418BAW1_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BAW1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.280e-13
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   58 VHFVDTPERLQRMGETLRKSVVMSIDTETQPSFK-VGEWHPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFASPQVLKL 330
            V F+ TP +L    E LR ++V+ +DTET+P FK     +PTSLLQ+A RDA G EDV + DLL+L      P   N+ LA  F +P +LKL
Sbjct:   19 VQFLHTPSQLAACHERLRTAIVVGLDTETKPEFKKTAIPNPTSLLQVAVRDAHGAEDVFLFDLLALT-----PSHYNDMLAELFLNPSILKL 105          
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: A0A6G0XKK2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKK2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.040e-13
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   58 VHFVDTPERLQRMGETLRKSVVMSIDTETQPSFKVGE-WHPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFASPQVLKL 330
            V F+    +L       +K+VV+ +DTET+P FK G   +PTSLLQIATRD +G+EDV ++DLL+LK G       N+ L+  F +P ++K+
Sbjct:   48 VQFISKASQLANCHACFQKAVVVGLDTETKPEFKKGAPQNPTSLLQIATRDKKGKEDVFILDLLALKPG-----DYNDMLSELFLAPSIVKM 134          
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: A0A485KTI5_9STRA (Aste57867_11637 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTI5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.550e-13
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   49 KNRVHFVDTPERLQRMGETLRKSVVMSIDTETQPSFKVGE-WHPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFASPQVLKL 330
            + RV F+  P ++    E  R +V++ +DTET+P F+ G   + TSLLQIATRDA G+E+V + DLL+LK     P   N+ L+  F +P VLK+
Sbjct:   43 EKRVQFISDPSQVAYCHERFRDAVIIGLDTETKPEFQRGAPQNKTSLLQIATRDAAGKEEVFIFDLLALK-----PIHYNKMLSDVFLAPHVLKM 132          
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: A0A7S2XWB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWB0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.670e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   31 FGLDVPKNRVHFVDTPERLQRMGETLRKSVVMSIDTETQPSF---KVGEWHPTSLLQIATRDARGEEDVLVIDLLSL 252
            F  D+P  R+ F+D PE L  + ETL +SV++ ID E++PSF   +       ++LQIATRD+ G EDV V+DL +L
Sbjct:   69 FTFDLPAQRLRFIDRPEDLDFVKETLARSVLLGIDCESRPSFLGKRKSREQSVAILQIATRDSAGREDVFVLDLQTL 145          
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: A0A1V9YDW6_9STRA (3'-5' exonuclease domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDW6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-7
Identity = 37/92 (40.22%), Postives = 50/92 (54.35%), Query Frame = 1
Query:   58 VHFVDTPERLQRMGETLRKSVVMSIDTETQPSFKVGEW-HPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFASPQVLKL 330
            V FV     +      LR +V+  +DTET+P FK     +P SLLQIA RDA+G E+V V+DLL+L          NE L   F +  ++KL
Sbjct:   38 VTFVGAATDIPHCNARLRDAVLAGLDTETKPEFKRNAARNPVSLLQIAVRDAKGVEEVFVLDLLALA-----VDDYNEMLTELFCASDIIKL 124          
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Match: A0A7X7TZP8_9BACT (3'-5' exonuclease domain-containing protein 2 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7TZP8_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.350e-7
Identity = 29/90 (32.22%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   58 VHFVDTPERLQRMGETLRKSVVMSIDTETQPSFKVGEWHPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFASPQVLK 327
            +H +  PE+++R  + L K  V+  DTET+P+F+VGE++P ++LQ+      GE+   +  L   +        L+ AL G  A+P+++K
Sbjct:   18 IHVIRRPEQIERAVKQLEKETVLGFDTETRPTFRVGEYYPPAILQLV-----GEKAAYIFQLRHCR--------LSPALLGLLANPRIVK 94          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7576.17867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JKU4_9PHAE8.170e-4573.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQB4_ECTSI2.040e-3184.063\'-5\' exonuclease family protein n=1 Tax=Ectocar... [more]
A0A5D6YC74_9STRA9.180e-1748.543'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A024TW10_9STRA8.440e-1447.833'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A418BAW1_9STRA1.280e-1346.74T-complex protein 1 subunit gamma n=1 Tax=Aphanomy... [more]
A0A6G0XKK2_9STRA4.040e-1343.48Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A485KTI5_9STRA5.550e-1343.16Aste57867_11637 protein n=2 Tax=Aphanomyces stella... [more]
A0A7S2XWB0_9STRA2.670e-1245.45Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1V9YDW6_9STRA1.940e-740.223'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A7X7TZP8_9BACT2.350e-732.223'-5' exonuclease domain-containing protein 2 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7576contigM-pyrifera_M_contig7576:9923..10777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3.9e-24
Seed eggNOG ortholog2880.D8LQB4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
EggNOG OGsKOG2207@1,KOG2207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size332
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7576.17867.1prot_M-pyrifera_M_contig7576.17867.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7576 9935..10777 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.7605066-UTR-M-pyrifera_M_contig7576:9922..99341622816655.7605066-UTR-M-pyrifera_M_contig7576:9922..9934Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7576 9923..9934 +
1692278101.614996-UTR-M-pyrifera_M_contig7576:9922..99341692278101.614996-UTR-M-pyrifera_M_contig7576:9922..9934Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7576 9923..9934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.7736714-CDS-M-pyrifera_M_contig7576:9934..101251622816655.7736714-CDS-M-pyrifera_M_contig7576:9934..10125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7576 9935..10125 +
1692278101.6254282-CDS-M-pyrifera_M_contig7576:9934..101251692278101.6254282-CDS-M-pyrifera_M_contig7576:9934..10125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7576 9935..10125 +
1622816655.788401-CDS-M-pyrifera_M_contig7576:10650..107771622816655.788401-CDS-M-pyrifera_M_contig7576:10650..10777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7576 10651..10777 +
1692278101.6355257-CDS-M-pyrifera_M_contig7576:10650..107771692278101.6355257-CDS-M-pyrifera_M_contig7576:10650..10777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7576 10651..10777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7576.17867.1

>prot_M-pyrifera_M_contig7576.17867.1 ID=prot_M-pyrifera_M_contig7576.17867.1|Name=mRNA_M-pyrifera_M_contig7576.17867.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MLLLPLFGLDVPKNRVHFVDTPERLQRMGETLRKSVVMSIDTETQPSFKV
GEWHPTSLLQIATRDARGEEDVLVIDLLSLKDGLRLPQVLNEALAGPFAS
PQVLKL
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mRNA from alignment at M-pyrifera_M_contig7576:9923..10777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7576.17867.1 ID=mRNA_M-pyrifera_M_contig7576.17867.1|Name=mRNA_M-pyrifera_M_contig7576.17867.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=855bp|location=Sequence derived from alignment at M-pyrifera_M_contig7576:9923..10777+ (Macrocystis pyrifera P11B4 male)
CAAGCACCAGGGATGCTACTGCTGCCGCTGTTTGGCCTGGATGTTCCGAA GAACCGCGTGCACTTTGTCGACACGCCAGAACGCCTCCAGAGGATGGGGG AAACCCTCCGGAAAAGCGTGGTGATGTCGATAGATACCGAGACGCAGCCG TCCTTTAAGGTGGGGGAGTGGCACCCAACTTCTCTACTCCAGATTGCGAC CAGGTGGGAGTTTTTTGTGATCTATTTTTGTGTTGCTGGGTTTGTTTTTT TTGGAGGGGGGCGGGGGGGGTTGGTCTGGTTTGGTTTGGTTAGTTCCATG GGTTGCTTCATTTTTCTTTGGTTTTACAGGATAGTTTGGTTTTGGTTTGG TGTTGGTTGTGGGTGTGGTGTGGTTATGTTTTTTCTGACTCTTCTTTTTT TGGTTTCATATCGTTTGGTTTGGGTTGTTTGCTTTTGTTTTCTTTTAGTT TTTGCTTGATATTATTTTTCTCCGTTTTTTTTTTCCTGTTTACGTGGTAC CAGCATGGTTTTAGGTTGCTCGTTTTTGTCTTTAGTCTCTCGCCTGAGGG GGCCTTGTACGTCTTGTTTTTCGGCCAACGTACCGCTCAACGATTCACGT CGATTGTCTCTGACTGTCCGCCTGCCTGTCCGCCTGCCTGCCTGCCTGCC TGCCTGCCTGCCTAATTGTCCACCTGCCTGCCTGCGTGCCTGTCTGCCTG CCCCCCCCTTCCTCTTTGTATCTCTCAGGGACGCGCGAGGAGAAGAAGAC GTGCTTGTGATCGACCTCCTGTCACTCAAGGACGGTCTTCGGCTGCCGCA GGTCTTGAACGAGGCGCTAGCAGGCCCGTTTGCGTCTCCCCAGGTCCTCA AGCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7576:9923..10777+

>mRNA_M-pyrifera_M_contig7576.17867.1 ID=mRNA_M-pyrifera_M_contig7576.17867.1|Name=mRNA_M-pyrifera_M_contig7576.17867.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig7576:9923..10777+ (Macrocystis pyrifera P11B4 male)
ATGCTACTGCTGCCGCTGTTTGGCCTGGATGTTCCGAAGAACCGCGTGCA
CTTTGTCGACACGCCAGAACGCCTCCAGAGGATGGGGGAAACCCTCCGGA
AAAGCGTGGTGATGTCGATAGATACCGAGACGCAGCCGTCCTTTAAGGTG
GGGGAGTGGCACCCAACTTCTCTACTCCAGATTGCGACCAGATGCTACTG
CTGCCGCTGTTTGGCCTGGATGTTCCGAAGAACCGCGTGCACTTTGTCGA
CACGCCAGAACGCCTCCAGAGGATGGGGGAAACCCTCCGGAAAAGCGTGG
TGATGTCGATAGATACCGAGACGCAGCCGTCCTTTAAGGTGGGGGAGTGG
CACCCAACTTCTCTACTCCAGATTGCGACCAGGGACGCGCGAGGAGAAGA
AGACGTGCTTGTGATCGACCTCCTGTCACTCAAGGACGGTCTTCGGCTGC
CGCAGGTCTTGAACGAGGCGCTAGCAGGCCCGTTTGCGTCTCCCCAGGTC
CTCAAGCTAGGACGCGCGAGGAGAAGAAGACGTGCTTGTGATCGACCTCC
TGTCACTCAAGGACGGTCTTCGGCTGCCGCAGGTCTTGAACGAGGCGCTA
GCAGGCCCGTTTGCGTCTCCCCAGGTCCTCAAGCTA
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