mRNA_M-pyrifera_M_contig7569.17852.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7569.17852.1
Unique NamemRNA_M-pyrifera_M_contig7569.17852.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7569.17852.1 vs. uniprot
Match: A0A6H5KV25_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV25_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.260e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 RHSHELFQEENINLWSEIIDFKRGEYAVPHLGRALDVGE---VSVLSASR 141
            RHS E FQEEN++LW+EI DFK GEYA P++G AL+VGE   + VL A R
Sbjct:  119 RHSQEFFQEENVSLWTEISDFKTGEYAAPYMGTALEVGEGDSIVVLRAKR 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7569.17852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV25_9PHAE3.260e-1162.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7569contigM-pyrifera_M_contig7569:11608..11769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.9507918-CDS-M-pyrifera_M_contig7569:11607..117691622816654.9507918-CDS-M-pyrifera_M_contig7569:11607..11769Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7569 11608..11769 +
1692278101.2103658-CDS-M-pyrifera_M_contig7569:11607..117691692278101.2103658-CDS-M-pyrifera_M_contig7569:11607..11769Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7569 11608..11769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7569.17852.1prot_M-pyrifera_M_contig7569.17852.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7569 11608..11769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7569.17852.1

>prot_M-pyrifera_M_contig7569.17852.1 ID=prot_M-pyrifera_M_contig7569.17852.1|Name=mRNA_M-pyrifera_M_contig7569.17852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
RHSHELFQEENINLWSEIIDFKRGEYAVPHLGRALDVGEVSVLSASRNHQ
HDI*
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mRNA from alignment at M-pyrifera_M_contig7569:11608..11769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7569.17852.1 ID=mRNA_M-pyrifera_M_contig7569.17852.1|Name=mRNA_M-pyrifera_M_contig7569.17852.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig7569:11608..11769+ (Macrocystis pyrifera P11B4 male)
AGGCACAGCCACGAGCTATTTCAGGAAGAGAACATCAACCTCTGGTCCGA
GATAATCGACTTCAAGAGAGGAGAGTATGCCGTGCCGCACTTGGGAAGAG
CGCTAGACGTCGGGGAGGTAAGCGTATTAAGCGCAAGCAGAAACCACCAG
CACGATATATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7569:11608..11769+

>mRNA_M-pyrifera_M_contig7569.17852.1 ID=mRNA_M-pyrifera_M_contig7569.17852.1|Name=mRNA_M-pyrifera_M_contig7569.17852.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig7569:11608..11769+ (Macrocystis pyrifera P11B4 male)
AGGCACAGCCACGAGCTATTTCAGGAAGAGAACATCAACCTCTGGTCCGA
GATAATCGACTTCAAGAGAGGAGAGTATGCCGTGCCGCACTTGGGAAGAG
CGCTAGACGTCGGGGAGGTAAGCGTATTAAGCGCAAGCAGAAACCACCAG
CACGATATATAAAGGCACAGCCACGAGCTATTTCAGGAAGAGAACATCAA
CCTCTGGTCCGAGATAATCGACTTCAAGAGAGGAGAGTATGCCGTGCCGC
ACTTGGGAAGAGCGCTAGACGTCGGGGAGGTAAGCGTATTAAGCGCAAGC
AGAAACCACCAGCACGATATATAA
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