mRNA_M-pyrifera_M_contig75687.17850.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75687.17850.1
Unique NamemRNA_M-pyrifera_M_contig75687.17850.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75687.17850.1 vs. uniprot
Match: A0A6H5JHG7_9PHAE (ANAPC8 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHG7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.000e-12
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 TGNAQDVLVRSLRLFPYNWSAWLDLASLCLETDTVRD 114
            T  AQ+VL RSLRLFPYNWSAWLDLASLCLETDTV +
Sbjct:  280 TATAQEVLARSLRLFPYNWSAWLDLASLCLETDTVPE 316
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BLAST of mRNA_M-pyrifera_M_contig75687.17850.1 vs. uniprot
Match: A0A251SHP1_HELAN (Putative anaphase-promoting complex subunit 8 n=6 Tax=Asteraceae TaxID=4210 RepID=A0A251SHP1_HELAN)

HSP 1 Score: 48.9 bits (115), Expect = 1.590e-5
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   13 AQDVLVRSLRLFPYNWSAWLDLASLCLETDTVRDL 117
            A+ VLV S+  +P+NWSAWL+L SLC  TDT+  L
Sbjct:  199 ARTVLVESVNAYPWNWSAWLELQSLCTTTDTLNSL 233
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BLAST of mRNA_M-pyrifera_M_contig75687.17850.1 vs. uniprot
Match: F4PLN6_CAVFA (Anaphase promoting complex subunit 8 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PLN6_CAVFA)

HSP 1 Score: 47.8 bits (112), Expect = 4.080e-5
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:   13 AQDVLVRSLRLFPYNWSAWLDLASLCLETDTVRDL 117
            A+ +L+ SL L+P NWSAWLDLASLC +   V  L
Sbjct:  267 ARQILLESLHLYPCNWSAWLDLASLCTDIQQVSQL 301
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BLAST of mRNA_M-pyrifera_M_contig75687.17850.1 vs. uniprot
Match: A0A2P6MPD3_9EUKA (Phosphoenolpyruvate carboxykinase (ATP) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MPD3_9EUKA)

HSP 1 Score: 47.4 bits (111), Expect = 5.560e-5
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    1 MTGNAQDVLVRSLRLFPYNWSAWLDLASLCLETDTVRDL 117
            M   AQ +L+ S+ L+P+NWSAWL+LASL  E D    L
Sbjct:  145 MKSQAQVILIESVNLYPWNWSAWLELASLFSEVDATSQL 183
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BLAST of mRNA_M-pyrifera_M_contig75687.17850.1 vs. uniprot
Match: A0A426XXN8_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426XXN8_ENSVE)

HSP 1 Score: 47.0 bits (110), Expect = 7.650e-5
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:   13 AQDVLVRSLRLFPYNWSAWLDLASLCLETDTVRDL 117
            A  V V S+  FP+NWSAWL+L SLC  TDT+  L
Sbjct:   55 AVTVFVESVNSFPWNWSAWLELQSLCTNTDTLNKL 89
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75687.17850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JHG7_9PHAE1.000e-1283.78ANAPC8 domain-containing protein n=3 Tax=Ectocarpu... [more]
A0A251SHP1_HELAN1.590e-557.14Putative anaphase-promoting complex subunit 8 n=6 ... [more]
F4PLN6_CAVFA4.080e-557.14Anaphase promoting complex subunit 8 n=1 Tax=Caven... [more]
A0A2P6MPD3_9EUKA5.560e-551.28Phosphoenolpyruvate carboxykinase (ATP) n=1 Tax=Pl... [more]
A0A426XXN8_ENSVE7.650e-557.14Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75687contigM-pyrifera_M_contig75687:753..869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D7FLS8
Preferred nameAPC8
KEGG koko:K03355
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0008150,GO:0031347,GO:0048583,GO:0050789,GO:0065007,GO:0080134
EggNOG free text desc.regulation of mitotic metaphase/anaphase transition
EggNOG OGsCOG0013@1,KOG1155@2759
Ec32 ortholog descriptionCdc23
Ec32 orthologEc-00_007980.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons1
Model size117
Cds size117
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.8699987-CDS-M-pyrifera_M_contig75687:752..8691622816654.8699987-CDS-M-pyrifera_M_contig75687:752..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75687 753..869 -
1692278101.180867-CDS-M-pyrifera_M_contig75687:752..8691692278101.180867-CDS-M-pyrifera_M_contig75687:752..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75687 753..869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75687.17850.1prot_M-pyrifera_M_contig75687.17850.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75687 753..869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75687.17850.1

>prot_M-pyrifera_M_contig75687.17850.1 ID=prot_M-pyrifera_M_contig75687.17850.1|Name=mRNA_M-pyrifera_M_contig75687.17850.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
MTGNAQDVLVRSLRLFPYNWSAWLDLASLCLETDTVRDL
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mRNA from alignment at M-pyrifera_M_contig75687:753..869-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75687.17850.1 ID=mRNA_M-pyrifera_M_contig75687.17850.1|Name=mRNA_M-pyrifera_M_contig75687.17850.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=117bp|location=Sequence derived from alignment at M-pyrifera_M_contig75687:753..869- (Macrocystis pyrifera P11B4 male)
ATGACGGGCAATGCTCAGGATGTTTTGGTCCGGTCGCTGCGGCTGTTCCC
GTACAACTGGTCGGCGTGGCTGGACCTGGCCTCGCTGTGCCTGGAGACCG
ATACGGTGAGGGACTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75687:753..869-

>mRNA_M-pyrifera_M_contig75687.17850.1 ID=mRNA_M-pyrifera_M_contig75687.17850.1|Name=mRNA_M-pyrifera_M_contig75687.17850.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig75687:753..869- (Macrocystis pyrifera P11B4 male)
ATGACGGGCAATGCTCAGGATGTTTTGGTCCGGTCGCTGCGGCTGTTCCC
GTACAACTGGTCGGCGTGGCTGGACCTGGCCTCGCTGTGCCTGGAGACCG
ATACGGTGAGGGACTTGATGACGGGCAATGCTCAGGATGTTTTGGTCCGG
TCGCTGCGGCTGTTCCCGTACAACTGGTCGGCGTGGCTGGACCTGGCCTC
GCTGTGCCTGGAGACCGATACGGTGAGGGACTTG
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