mRNA_M-pyrifera_M_contig7562.17837.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7562.17837.1
Unique NamemRNA_M-pyrifera_M_contig7562.17837.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7562.17837.1 vs. uniprot
Match: D8LNA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA8_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 3.880e-77
Identity = 160/287 (55.75%), Postives = 181/287 (63.07%), Query Frame = 1 
Query:    1 MQSMALVSGNSNPPHDWAGPAKGDRKALPLGAVLVQPPQARATSNTXXXXXXXXPG--QSRTGAAASAIPLHSITVKGCPSTLPPXXXXXPVMVLFPATLHLSIFLEVPPPTAIASAALALLALLGWWVWDWGMVSSAGFGSGLAAGLVAGLGVRSRPLGGWSCVTLSVLGVALLGGGLPSAIFAAELTFSTFWRHGWWLYLQPECAVVLFML-GTTADVALGFLLSSL-QIYRTQPPQHPRSSEPQSPAVVPIVAGGE----------GQWNAVTPPGLAGVRGGR 819
            MQS+ LV   S P    AGPAKGDR  LPLG ++ +PP A   +  XXXXXXX  G  Q  TG   S  PL+ +  +GCPSTLPP     PVMVLFPATL LSIFL  PPP  +AS  L LLA+LG W     +VS+AG GSGLAAGL AGLGVRSRP+GGW    LSVLG+ALLGGG  S  F   L  ST WRHGWWLY+QPECA VLF+L GTTADVALGFLL+SL QI+R+                  + A               WNAVTPPGLAG+RG R
Sbjct:    1 MQSLVLVDDYSRPAAATAGPAKGDRSLLPLG-LISKPPAAEHGTGXXXXXXXXAAGRPQRPTGEPLSD-PLY-VRAEGCPSTLPPPPAGPPVMVLFPATLPLSIFLAPPPPATLASGVLTLLAILGSWGXXXXLVSAAGVGSGLAAGLTAGLGVRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIHRSPSXXXXXXXXXXXXXXXXVSAAAAHDHHASGSQADMWNAVTPPGLAGLRGRR 284
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BLAST of mRNA_M-pyrifera_M_contig7562.17837.1 vs. uniprot
Match: A0A6H5LJL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJL3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.770e-17
Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:  496 SVLGVALLGGGLPSAIFAAELTFSTFWRHGWWLYLQPECAVVLFML-GTTADVALGFLLSSL 678
            SVLG+ALLGGG  S  F   L  +T WRHGWWLY+QPECA V F+L GTTADVALGFLL+SL
Sbjct: 1216 SVLGIALLGGGKASLTFGMSLGLTTLWRHGWWLYVQPECAPVFFLLSGTTADVALGFLLTSL 1277
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7562.17837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNA8_ECTSI3.880e-7755.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LJL3_9PHAE7.770e-1770.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7562contigM-pyrifera_M_contig7562:4770..7833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004540.1
Exons3
Model size828
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7562.17837.1prot_M-pyrifera_M_contig7562.17837.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7562 4770..7833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.0591822-CDS-M-pyrifera_M_contig7562:4769..49191622816654.0591822-CDS-M-pyrifera_M_contig7562:4769..4919Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7562 4770..4919 -
1692278100.7595308-CDS-M-pyrifera_M_contig7562:4769..49191692278100.7595308-CDS-M-pyrifera_M_contig7562:4769..4919Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7562 4770..4919 -
1622816654.0731015-CDS-M-pyrifera_M_contig7562:6292..64751622816654.0731015-CDS-M-pyrifera_M_contig7562:6292..6475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7562 6293..6475 -
1692278100.7698421-CDS-M-pyrifera_M_contig7562:6292..64751692278100.7698421-CDS-M-pyrifera_M_contig7562:6292..6475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7562 6293..6475 -
1622816654.0861013-CDS-M-pyrifera_M_contig7562:7338..78331622816654.0861013-CDS-M-pyrifera_M_contig7562:7338..7833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7562 7339..7833 -
1692278100.7789867-CDS-M-pyrifera_M_contig7562:7338..78331692278100.7789867-CDS-M-pyrifera_M_contig7562:7338..7833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7562 7339..7833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7562.17837.1

>prot_M-pyrifera_M_contig7562.17837.1 ID=prot_M-pyrifera_M_contig7562.17837.1|Name=mRNA_M-pyrifera_M_contig7562.17837.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=276bp
MQSMALVSGNSNPPHDWAGPAKGDRKALPLGAVLVQPPQARATSNTTTAS
SSSSPGQSRTGAAASAIPLHSITVKGCPSTLPPPPPGPPVMVLFPATLHL
SIFLEVPPPTAIASAALALLALLGWWVWDWGMVSSAGFGSGLAAGLVAGL
GVRSRPLGGWSCVTLSVLGVALLGGGLPSAIFAAELTFSTFWRHGWWLYL
QPECAVVLFMLGTTADVALGFLLSSLQIYRTQPPQHPRSSEPQSPAVVPI
VAGGEGQWNAVTPPGLAGVRGGRRM*
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mRNA from alignment at M-pyrifera_M_contig7562:4770..7833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7562.17837.1 ID=mRNA_M-pyrifera_M_contig7562.17837.1|Name=mRNA_M-pyrifera_M_contig7562.17837.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3064bp|location=Sequence derived from alignment at M-pyrifera_M_contig7562:4770..7833- (Macrocystis pyrifera P11B4 male)
ATGCAGTCGATGGCGCTCGTGAGCGGCAACTCCAACCCCCCGCACGACTG
GGCAGGCCCCGCCAAGGGCGACCGAAAGGCCCTACCTCTCGGCGCCGTCT
TGGTCCAACCACCTCAAGCCAGGGCCACCTCCAACACCACCACCGCCTCT
TCCTCTTCCTCTCCCGGACAGTCTCGGACGGGAGCCGCGGCATCAGCGAT
ACCTCTGCACAGTATTACCGTGAAAGGATGCCCGTCGACGCTACCGCCAC
CCCCGCCGGGACCCCCGGTGATGGTGCTGTTCCCGGCCACCCTTCACCTG
TCGATATTCCTAGAGGTGCCGCCGCCGACGGCGATCGCCTCGGCAGCTCT
GGCGCTTCTGGCCCTGCTCGGGTGGTGGGTGTGGGACTGGGGGATGGTGT
CCTCGGCGGGCTTTGGTTCGGGGTTGGCGGCGGGGCTCGTGGCGGGCCTT
GGCGTCCGATCGAGACCGTTGGGAGGGTGGAGCTGCGTGACTCTGGTGAG
ATGAGGGATTGTTATGTCGGCGTTGGTATCGGTGTTGGTGTTCATATTCG
TGCTACAGCATGTCGTTGTTGCCCGTCATCTTGGACGGTTTTTGTTGCGG
TTTTTGGAAGGACTGAAGGGGGCTTCAAATGTTGCGTTCGCGCGCGGGGG
CGGGAGAGGAAGGAGGGGTCGAGAATTCAGGCAGCAAGCAGCCAGTCGTT
GCTTCGAGGAGCCGGGATTGCCGGGATTGGTCTATTATTTCACTAAAGGA
GTGCGACTGGCGTTCTTTGTGCTTGTTGTTTCGATTGAACACGCGCGTTG
CGTTTTCCGGTTCGTATGAGTATATATGCGTGGTACGTACCTGGTATGCT
ACAGAGTATATACCTAGTGTATGGTGCGTAGTATAGCAAGAACGGCTCAA
TGCCATCGCTCTCGACGGCGGCAAGAAACATGCCCTTTCGTGGACCTACA
GCATAGAGTAATTTGGTGGACAGGAATGGACAAGTTGCGGTACCCCGATC
AGCTCTCATACCCCGTCGCCCCTGCGTGCACCGCGCTCTGGTTTTGGCCG
CAGTACGTGTCGCAACCCGTCGTTTTTTTTTTGTGTTCATCGCGCTGCAT
CGTTCTGCAGAACATTCGTTTATAACCCTTTCCACCAACTGCGATAAGAT
CCCCACTTTGATTCCAAGTCGTTTGCGCCCAAAGATGTACGTGTCTGGTA
CAATTTTACAAGAGTTGAATGCCCAACCTCCTCACTTCTATCGCAGAGCC
CGTAACGTATCGCGCCCGTTCTCACCCCCACCGCTCTGCTTGCCGATGCC
ATTCCAACCGTTTCGTATATACGGATCTACACTTCTTCCCATGGACGAGG
GTCTGTAGTCAGTGCTCGGGGTTGCGCTGCTAGGAGGCGGTCTGCCTAGC
GCTATTTTCGCGGCAGAATTGACTTTTTCTACGTTTTGGAGGCACGGGTG
GTGGCTTTACCTGCAGCCGGAGTGCGCGGTCGTGTTGTTCATGCTGGGGA
CTACTGCGGATGTTGCTCTGGGGTTCCTTCTCTCTTCGCTCGTCCAGGCA
AGGACTCCTGTCTGTCGACCAACGCCAAAGGGCCTTGTTTTGACCCGTTT
TTCGTTAGATTTTGGTACTGGTACGTATGTAGACGCCACAAGGGTGCGTC
GTGGCGCGGTTCTATATCGGCACGTAACCGCCCCGCGAAATCGCATCATA
AAATGGTTTTCGTATCGGTAGCGGCCGCAAGAGCGCGCGCGGTAACACAA
GTGCACGGCATCGCTCAACACTGGGGAGTTGAAGAATATATTTGGCCCCA
CATTGGCGCGAACAAGTAATTGCATAGGCCGTTTTTTATCGCGAGATTGG
TGTAGGACAACACCCTGCCCCACATAGAAATTTGGGGCTTAACTCAAAGA
AGAGTTTCTCGGGTGTGTCTCGGCTTACTGCTGTGTTTATGACCCGGAAC
AATCGCACAAGTTCGTGTCTATCGTCTCGTGGGTGAGGCCGCTGTTCATA
CAGTACAACATATCAGAGCAAGTTATTGTATGCTGATCGGAAGTGTGGCG
TTTTACGGTATTTGCTATCTTTGTTTTTGTAGACTATCATGATAGTTCTT
TCCCATCGTTGTTGCTACGAACGGAAGCGTCCTCGTTCTGAACTACTAAT
ATTATTAACTGCAGGAGGCCAAGTTTCTCTCACGGGGGCTCCCTTGTAAA
TGGGAAAATATCGCCAGCACCGTTTCGCCGCAGTAAGTACATCGTCTCAC
CATCCACCATGCCAAGCACACGAGATTCGCCCGGGAATGGACCTAATCGC
ACATTTAACGCCGTTTGTAACTTTTTCCCAATACGTACTGCATCCAAAAT
TTTGTTTTTTGCGCTATAACTTCCGCATAATATATGCATGTCCCAAAAGT
TTGGTACGCCGCCGGAAAGCTTAGCAAACACCTCTTGGCGTTAAGTACTC
ACGCGAAAATATGCTATTACGGGGGTCCATAGTAAATAGGACCAAATTTT
GTTAGTAAAAATAGGTAAATATATAGGTTTTTGTGTATACCATAGGTCCT
ATTAACTATGGACCCCCGTAATAGCAGACAAGTCTTTTCTTGGGGCGTGT
AAATACCTATTTTGATCTTCTTATACTAGAGTAAGTGCGCGGTCAGCCCA
GGGGTCAAGCCGCGGTATCCTATATAGCGTACTTGCCAATGCGAGACGCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCGACCTCACACACGCAAC
CCCCCCCACCACCCCCAAACTCCCACCNNNNNNNNNNCTCTTTTTTCTTC
TTTTTTCTGAGGAGAAAGGCCCGCCTCCCCCCGGGCGCCACCCCCCGCTT
CCCTGTTATCCTCCCTCCCAAACCCGGCCCCCCCCCCCCCCCCCCCCTCC
TGCCCCTCTTCAAGCAGATTTACCGGACGCAACCACCGCAACATCCGAGA
TCGTCCGAACCTCAATCACCGGCTGTTGTGCCTATCGTGGCCGGGGGGGA
GGGGCAATGGAACGCAGTGACGCCGCCAGGCCTTGCGGGGGTGCGCGGAG
GTAGAAGGATGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7562:4770..7833-

>mRNA_M-pyrifera_M_contig7562.17837.1 ID=mRNA_M-pyrifera_M_contig7562.17837.1|Name=mRNA_M-pyrifera_M_contig7562.17837.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1656bp|location=Sequence derived from alignment at M-pyrifera_M_contig7562:4770..7833- (Macrocystis pyrifera P11B4 male)
ATGCAGTCGATGGCGCTCGTGAGCGGCAACTCCAACCCCCCGCACGACTG
GGCAGGCCCCGCCAAGGGCGACCGAAAGGCCCTACCTCTCGGCGCCGTCT
TGGTCCAACCACCTCAAGCCAGGGCCACCTCCAACACCACCACCGCCTCT
TCCTCTTCCTCTCCCGGACAGTCTCGGACGGGAGCCGCGGCATCAGCGAT
ACCTCTGCACAGTATTACCGTGAAAGGATGCCCGTCGACGCTACCGCCAC
CCCCGCCGGGACCCCCGGTGATGGTGCTGTTCCCGGCCACCCTTCACCTG
TCGATATTCCTAGAGGTGCCGCCGCCGACGGCGATCGCCTCGGCAGCTCT
GGCGCTTCTGGCCCTGCTCGGGTGGTGGGTGTGGGACTGGGGGATGGTGT
CCTCGGCGGGCTTTGGTTCGGGGTTGGCGGCGGGGCTCGTGGCGGGCCTT
GGCGTCCGATCGAGACCGTTGGGAGGGTGGAGCTGCGTGACTCTGATGCA
GTCGATGGCGCTCGTGAGCGGCAACTCCAACCCCCCGCACGACTGGGCAG
GCCCCGCCAAGGGCGACCGAAAGGCCCTACCTCTCGGCGCCGTCTTGGTC
CAACCACCTCAAGCCAGGGCCACCTCCAACACCACCACCGCCTCTTCCTC
TTCCTCTCCCGGACAGTCTCGGACGGGAGCCGCGGCATCAGCGATACCTC
TGCACAGTATTACCGTGAAAGGATGCCCGTCGACGCTACCGCCACCCCCG
CCGGGACCCCCGGTGATGGTGCTGTTCCCGGCCACCCTTCACCTGTCGAT
ATTCCTAGAGGTGCCGCCGCCGACGGCGATCGCCTCGGCAGCTCTGGCGC
TTCTGGCCCTGCTCGGGTGGTGGGTGTGGGACTGGGGGATGGTGTCCTCG
GCGGGCTTTGGTTCGGGGTTGGCGGCGGGGCTCGTGGCGGGCCTTGGCGT
CCGATCGAGACCGTTGGGAGGGTGGAGCTGCGTGACTCTGTCAGTGCTCG
GGGTTGCGCTGCTAGGAGGCGGTCTGCCTAGCGCTATTTTCGCGGCAGAA
TTGACTTTTTCTACGTTTTGGAGGCACGGGTGGTGGCTTTACCTGCAGCC
GGAGTGCGCGGTCGTGTTGTTCATGCTGGGGACTACTGCGGATGTTGCTC
TGGGGTTCCTTCTCTCTTCGCTCTCAGTGCTCGGGGTTGCGCTGCTAGGA
GGCGGTCTGCCTAGCGCTATTTTCGCGGCAGAATTGACTTTTTCTACGTT
TTGGAGGCACGGGTGGTGGCTTTACCTGCAGCCGGAGTGCGCGGTCGTGT
TGTTCATGCTGGGGACTACTGCGGATGTTGCTCTGGGGTTCCTTCTCTCT
TCGCTCCAGATTTACCGGACGCAACCACCGCAACATCCGAGATCGTCCGA
ACCTCAATCACCGGCTGTTGTGCCTATCGTGGCCGGGGGGGAGGGGCAAT
GGAACGCAGTGACGCCGCCAGGCCTTGCGGGGGTGCGCGGAGGTAGAAGG
ATGTAGCAGATTTACCGGACGCAACCACCGCAACATCCGAGATCGTCCGA
ACCTCAATCACCGGCTGTTGTGCCTATCGTGGCCGGGGGGGAGGGGCAAT
GGAACGCAGTGACGCCGCCAGGCCTTGCGGGGGTGCGCGGAGGTAGAAGG
ATGTAG
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