mRNA_M-pyrifera_M_contig75610.17834.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75610.17834.1
Unique NamemRNA_M-pyrifera_M_contig75610.17834.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: UPI000C75E377 (E3 ubiquitin-protein ligase MYCBP2-like isoform X1 n=4 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75E377)

HSP 1 Score: 203 bits (516), Expect = 5.960e-56
Identity = 104/248 (41.94%), Postives = 146/248 (58.87%), Query Frame = 1
Query:   16 WLRLSVYAARSLAVVEVRRDP-RSASSGDEEVCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGCDDPRL---QGHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDC 747
            WL  +  AA    ++E R +P R  SS  E VCR+CG +  AA         P    VCT+E CQ+ ++     + PCGH  CG    G  GE   LPCL GCD   +    G D+C ICFT+ L   P I L CGHV H  C+R V++ RWP   +++ F  CP+C  N + HP+L+D++ P++AL ++  KKAL+RL+YE L + E +V+PGA++FN+P G+++D YAY  C KC K +F G   C
Sbjct: 4336 WLTAAADAATLKGMIEFREEPTRKGSSLVEAVCRYCGGSSCAA--------LPVHEGVCTEEECQENAKLACTKLNPCGHP-CG----GLAGEAVCLPCLRGCDKNEILKQDGDDMCMICFTEALHPIPSILLHCGHVFHYNCVRGVLKARWPGPRITFGFTQCPICKVN-MNHPALEDLINPISALYQDVKKKALMRLEYEGLSRCEAVVSPGARWFNNPTGFSMDRYAYYVCFKCGKSYFGGEARC 4569          
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: UPI001D065687 (E3 ubiquitin-protein ligase MYCBP2 n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D065687)

HSP 1 Score: 194 bits (494), Expect = 5.280e-53
Identity = 108/254 (42.52%), Postives = 155/254 (61.02%), Query Frame = 1
Query:    1 RLVLPWLRLSVYAARSL-AVVEVRRD-PRSASSGDEEVCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGC-DDPRLQ--GHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDC 747
            R+ L WL L++  AR+L A++E R    R+  +G   VCRFCG+T T+           A+ NVC  + CQ+ S+     +L CGH  CG    G   EE  LPCL GC ++P L+    D+C ICFT+ LS AP I+L+CGHV H  C + V+  +W    +++ F  CP+C  + + HP+LD++LEP+  L ++  +KAL+RL+YE L K E +VTPGA+F+NDP  YA+D YAY  C KC+K ++ G   C
Sbjct: 4238 RIKLFWL-LALADARTLKALIEYREGGTRTRGAGTSGVCRFCGATGTSGLL--------AIGNVCADQECQEYSKTACTKLLNCGHM-CG----GILDEEKCLPCLHGCSNEPNLRQDADDMCMICFTEALSCAPAIQLQCGHVFHLHCCKTVLMKKWTGPRITFSFSHCPICKKD-MEHPNLDELLEPIKKLLKDVQRKALMRLEYEGLHKAEAVVTPGARFYNDPASYAMDRYAYYVCFKCNKAYYGGEARC 4476          
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: UPI000BA81216 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase MYCBP2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA81216)

HSP 1 Score: 191 bits (484), Expect = 1.160e-51
Identity = 102/242 (42.15%), Postives = 139/242 (57.44%), Query Frame = 1
Query:   52 AVVEVRRDPRSASSGDEEVCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGCDDP----RLQGHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDCMV-AGV 762
            A+VE R   R  ++     CRFCG+T        G     A+ NVC++  CQ  +R     +LPCGH   G R E        LPCL GC+      R  G D+C ICFT+ L+ AP I+L+CGHV H  C R V+  RW    +++ F  CP+C A P+ H  L D+L+P+ AL E+  +KAL+RL+YE L K E I TPGA+F++DP G+A++ YAY  C KC K ++ G   C V AG+
Sbjct: 4433 AMVEFREGTRDKTTTSSGTCRFCGAT--------GQTGLLAIGNVCSEPECQGHARGACTKLLPCGHMCGGIRNENTC-----LPCLHGCNGEASGLRQDGDDMCMICFTEALACAPAIQLKCGHVFHLHCSRAVLSKRWLGPRITFGFSLCPICKA-PMEHLVLKDLLDPIRALYEDVKRKALMRLEYEGLHKAEAITTPGARFYSDPSGFAMERYAYYVCFKCKKAYYGGEARCDVEAGI 4660          
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: A0A3S4RKN2_9ACAR (RCR-type E3 ubiquitin transferase n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4RKN2_9ACAR)

HSP 1 Score: 189 bits (481), Expect = 2.920e-51
Identity = 96/226 (42.48%), Postives = 133/226 (58.85%), Query Frame = 1
Query:   76 PRSASSGDEEVCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGCDDPRLQ--GHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDC 747
            P + S     +CRFCG+T T+           A+ NVC    CQ+ +R V    L CGH   G + E        LPCL GC    L+  G D+C ICFT+ LS AP I+L CGH+ H  C + V++ RWP   +++ F  CP+C   P++HPSL+ +LE + +L E+  +KAL+RL+YE LD+ E I TPGA+FFN+P  YA++ YAY  CHKC K ++ G   C
Sbjct: 4401 PSNVSGPVTGICRFCGATGTSGLL--------AIGNVCGDGECQEHARNVCEKTLNCGHPCNGVKNESPC-----LPCLHGCSKAELKQDGDDMCMICFTEALSCAPVIQLHCGHLFHLHCCKTVLQRRWPGPRITFSFSFCPICK-EPMSHPSLEYLLESIRSLYEDVKRKALMRLEYEGLDRSEAITTPGARFFNNPIDYAMERYAYYVCHKCEKAYYGGEARC 4612          
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: A0A443RZ94_9ACAR (Putative E3 ubiquitin-protein ligase MYCBP2-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443RZ94_9ACAR)

HSP 1 Score: 183 bits (464), Expect = 2.990e-51
Identity = 92/222 (41.44%), Postives = 134/222 (60.36%), Query Frame = 1
Query:  106 VCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGCD--DPRLQGHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDCMV-AGV 762
            +CRFCG+T T+           A+ +VC +  CQ+ S+ +   IL CGH+  G R E        LPCL GC   D +  G D+C ICFTD LS AP I+L+CGH+ H  C R+V++ RWP   +++ F  CP+C    + H  L+D+L P+  L ++  +KAL+RL+YE LDK + + TPG++FFN+P  YA++ YAY  C KC K ++ G   C + AG+
Sbjct:  257 LCRFCGATGTSGLL--------AIGSVCGESECQEHSKNICDKILVCGHSCGGVRNESPC-----LPCLHGCSKGDLKQDGDDMCMICFTDHLSCAPVIQLKCGHLFHLHCCREVLQKRWPGPRITFAFSLCPICKYA-IEHKVLEDMLTPIKNLYDDVRRKALMRLEYEGLDKSDVLTTPGSRFFNNPADYAMERYAYCVCCKCEKAYYGGEARCDIEAGI 464          
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: A0A443S9P7_9ACAR (Putative E3 ubiquitin-protein ligase MYCBP2-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S9P7_9ACAR)

HSP 1 Score: 188 bits (478), Expect = 3.100e-51
Identity = 97/232 (41.81%), Postives = 137/232 (59.05%), Query Frame = 1
Query:   76 PRSASSGDEEVCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGCD--DPRLQGHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDCMV-AGV 762
            P S +     VCRFCG+T T+           A+ NVC++  CQ+ S+ +   IL CGH+  G R E        LPCL GC   D +  G D+C ICFT+ LS AP I+L+CGH+ H  C R V++ RWP   +++ F  CP+C  + + H  LDD+L P+  L ++  +KAL+RL+YE LD+ E + TPGA+FFN P  YA++ YAY  C KC K ++ G   C + AG+
Sbjct:  128 PSSMTGQGTGVCRFCGATGTSGLL--------AIGNVCSESECQEHSKNICDKILVCGHSCGGVRNESPC-----LPCLHGCSKGDLKQDGDDMCMICFTENLSCAPVIQLKCGHLFHLHCCRKVLQKRWPGPRITFAFSLCPICK-HTMEHKVLDDMLTPIKNLYDDVRRKALMRLEYEGLDRSEAVTTPGARFFNSPADYAMERYAYYVCCKCEKAYYGGEARCDIEAGI 345          
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: A0A7R9EZE1_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9EZE1_9NEOP)

HSP 1 Score: 189 bits (480), Expect = 3.590e-51
Identity = 101/248 (40.73%), Postives = 144/248 (58.06%), Query Frame = 1
Query:   16 WLRLSVYAARSLAVVEVRRDPRSASSGDEE-VCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGCD-DPRLQ--GHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDC 747
            W+     +    A+VE R   RS  +G    VCRFCG++        G     A+ N+C  + CQ+ +R     + PCGH  CG    G  GE   LPCL GC  DP L+    D+C ICFT+ LS AP I+L+CGHV H+ C + V+  RW    +++ F  CP+C ++ ++HP L ++L P+  L E+  +KAL+RL+YE L K E I +PGA+F+NDP  YA+D YAY  C+KC+K ++ G   C
Sbjct: 1029 WVMALADSCTLKAMVEFREGARSKPAGVASGVCRFCGTS--------GNSGLLAIGNICADQECQEHARNACSKLHPCGHM-CG----GIKGEATCLPCLHGCSADPNLKQDADDMCMICFTEALSCAPAIQLKCGHVFHQHCCKCVLMKRWAGPRITFAFSQCPICKSD-ISHPVLVELLAPVKDLYEDMRRKALMRLEYEGLHKAEAITSPGARFYNDPASYAMDRYAYYVCYKCNKAYYGGEARC 1262          
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: A0A8J6HN28_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HN28_TENMO)

HSP 1 Score: 189 bits (480), Expect = 3.620e-51
Identity = 107/249 (42.97%), Postives = 146/249 (58.63%), Query Frame = 1
Query:   16 WLRLSVYAARSLAVVEVRRD--PRSASSGDEEVCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGC-DDPRLQ--GHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDC 747
            WL L++  AR+L  +   RD   R+  +G   VCRFCG+T        G     A+ NVC    CQ+  R     +L CGH  CG    G  GE   LPCL GC +DP L+    D+C ICFT+ LS AP I+L+CGHV H  C + V+  RW    +++ F  CP+C  + + HP+LD++L P+  L ++  +KAL+RL+YE L   E IVTPGA+FFNDP  YA+D YAY  C+KC+K ++ G   C
Sbjct: 1114 WL-LALADARTLKALIEYRDGGARTKGAGMSGVCRFCGAT--------GSSGLLAIGNVCADHECQEYGRTACPKLLNCGHM-CG----GIIGEATCLPCLHGCSNDPNLRQDADDMCMICFTEALSCAPAIQLKCGHVFHLHCCKAVLMKRWAGPRITFSFSLCPICKDDMI-HPTLDELLSPIRELFKDVKRKALMRLEYEGLHTVEAIVTPGARFFNDPASYAMDRYAYYVCYKCNKAYYGGEARC 1347          
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: A0A2J7QII4_9NEOP (RING-type domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QII4_9NEOP)

HSP 1 Score: 186 bits (473), Expect = 4.840e-51
Identity = 101/248 (40.73%), Postives = 141/248 (56.85%), Query Frame = 1
Query:   16 WLRLSVYAARSLAVVEVRRDPRSASSG-DEEVCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGCD-DPRLQ--GHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDC 747
            W+     ++   A+VE R   R+  +G    VCRFCG+T        G     A+ N+C  + CQ+ +R     + PCGH  CG    G  GE   LPCL GC  +P L+    D+C ICFT+ LS AP ++L+CGHV H  C R V+  RW    +++ F  CP+C  N + HP L ++L P+  L E+  +KAL+RL+YE L K E I +PGA+F NDP  YA+D YAY  C+KC+K ++ G   C
Sbjct:  363 WVMALADSSTLKAMVEFREGTRNKPAGVTSGVCRFCGAT--------GNSGLLAIGNICADQECQEHARNACNKLHPCGHM-CG----GIKGEAVCLPCLHGCSSNPTLKQDADDMCMICFTEALSCAPAVQLKCGHVFHYHCCRCVLMKRWAGPRITFAFSQCPICKCN-IEHPVLSELLVPVKELYEDVRRKALMRLEYEGLHKVEAITSPGARFHNDPASYAMDRYAYYVCYKCNKAYYGGEARC 596          
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Match: A0A7R9ECD6_9NEOP (Hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9ECD6_9NEOP)

HSP 1 Score: 189 bits (479), Expect = 5.250e-51
Identity = 101/248 (40.73%), Postives = 144/248 (58.06%), Query Frame = 1
Query:   16 WLRLSVYAARSLAVVEVRRDPRSASSGDEE-VCRFCGSTLTAANRPPGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWKLPCLLGCD-DPRLQ--GHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVRIRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRLQYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDC 747
            W+     +    A+VE R   RS  +G    VCRFCG++        G     A+ N+C  + CQ+ +R     + PCGH  CG    G  GE   LPCL GC  DP L+    D+C ICFT+ LS AP I+L+CGHV H+ C + V+  RW    +++ F  CP+C ++ ++HP L ++L P+  L E+  +KAL+RL+YE L K E I +PGA+F+NDP  YA+D YAY  C+KC+K ++ G   C
Sbjct: 2346 WVMALADSCTLKAMVEFREGARSKPAGVASGVCRFCGTS--------GNSGLLAIGNICADQECQEHARNACSKLHPCGHM-CG----GIKGEVTCLPCLHGCSADPNLKQDADDMCMICFTEALSCAPAIQLKCGHVFHQHCCKCVLMKRWAGPRITFAFSQCPICKSD-ISHPVLVELLAPVKDLYEDMRRKALMRLEYEGLHKAEAITSPGARFYNDPASYAMDRYAYYVCYKCNKAYYGGEARC 2579          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75610.17834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C75E3775.960e-5641.94E3 ubiquitin-protein ligase MYCBP2-like isoform X1... [more]
UPI001D0656875.280e-5342.52E3 ubiquitin-protein ligase MYCBP2 n=1 Tax=Coccine... [more]
UPI000BA812161.160e-5142.15LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase M... [more]
A0A3S4RKN2_9ACAR2.920e-5142.48RCR-type E3 ubiquitin transferase n=1 Tax=Dinothro... [more]
A0A443RZ94_9ACAR2.990e-5141.44Putative E3 ubiquitin-protein ligase MYCBP2-like p... [more]
A0A443S9P7_9ACAR3.100e-5141.81Putative E3 ubiquitin-protein ligase MYCBP2-like p... [more]
A0A7R9EZE1_9NEOP3.590e-5140.73Hypothetical protein n=1 Tax=Timema bartmani TaxID... [more]
A0A8J6HN28_TENMO3.620e-5142.97Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A2J7QII4_9NEOP4.840e-5140.73RING-type domain-containing protein n=2 Tax=Crypto... [more]
A0A7R9ECD6_9NEOP5.250e-5140.73Hypothetical protein n=2 Tax=Timema TaxID=61471 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75610contigM-pyrifera_M_contig75610:21..782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score191.8
Seed ortholog evalue3.9e-46
Seed eggNOG ortholog7070.TC003207-PA
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGs38HTC@33154,3BGA4@33208,3CT3Q@33213,3SFX7@50557,41WKJ@6656,KOG1428@1,KOG1428@2759
COG Functional cat.O
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size762
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.9541879-CDS-M-pyrifera_M_contig75610:20..7821622816653.9541879-CDS-M-pyrifera_M_contig75610:20..782Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75610 21..782 -
1692278100.7160969-CDS-M-pyrifera_M_contig75610:20..7821692278100.7160969-CDS-M-pyrifera_M_contig75610:20..782Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75610 21..782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75610.17834.1prot_M-pyrifera_M_contig75610.17834.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75610 21..782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75610.17834.1

>prot_M-pyrifera_M_contig75610.17834.1 ID=prot_M-pyrifera_M_contig75610.17834.1|Name=mRNA_M-pyrifera_M_contig75610.17834.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
RLVLPWLRLSVYAARSLAVVEVRRDPRSASSGDEEVCRFCGSTLTAANRP
PGPPVAPAVANVCTQEYCQDRSREVSLDILPCGHASCGCREEGEWGEEWK
LPCLLGCDDPRLQGHDLCPICFTDELSQAPCIRLRCGHVVHRACMRDVVR
IRWPSVHMSWKFLDCPVCSANPVAHPSLDDILEPLTALREEHAKKALLRL
QYEDLDKHEDIVTPGAKFFNDPQGYALDTYAYAQCHKCSKPFFLGRKDCM
VAGV
back to top

mRNA from alignment at M-pyrifera_M_contig75610:21..782-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75610.17834.1 ID=mRNA_M-pyrifera_M_contig75610.17834.1|Name=mRNA_M-pyrifera_M_contig75610.17834.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig75610:21..782- (Macrocystis pyrifera P11B4 male)
CGTCTTGTCTTGCCTTGGTTACGGTTGAGCGTCTATGCAGCTAGATCCTT AGCAGTTGTTGAAGTGCGTCGTGATCCTCGTTCTGCATCAAGTGGTGATG AGGAGGTATGTCGATTCTGTGGATCAACTCTAACAGCTGCCAATCGACCA CCTGGTCCACCAGTTGCTCCTGCAGTTGCCAATGTTTGCACCCAAGAGTA TTGCCAAGACCGTTCACGAGAAGTCTCGTTGGATATTTTACCTTGCGGTC ATGCATCGTGTGGATGTCGTGAAGAAGGAGAATGGGGCGAAGAGTGGAAG TTACCTTGTTTGTTAGGATGTGATGATCCACGCTTGCAAGGACATGATTT ATGCCCAATTTGTTTCACTGATGAATTATCCCAAGCTCCATGCATTCGTC TCCGATGTGGCCATGTTGTGCATCGAGCCTGCATGCGAGATGTCGTCCGA ATTCGCTGGCCATCTGTTCACATGAGTTGGAAGTTTTTGGATTGTCCAGT GTGTTCAGCAAATCCAGTCGCCCATCCATCCCTCGATGATATCCTTGAGC CGCTCACAGCTTTACGGGAAGAACACGCCAAGAAGGCCTTGTTGCGATTG CAATATGAAGATTTGGACAAGCACGAAGATATCGTCACTCCAGGTGCAAA GTTCTTCAACGATCCCCAAGGATATGCGTTGGACACCTATGCCTACGCCC AATGCCACAAGTGCTCCAAGCCCTTCTTCTTGGGTCGCAAGGACTGCATG GTTGCGGGAGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig75610:21..782-

>mRNA_M-pyrifera_M_contig75610.17834.1 ID=mRNA_M-pyrifera_M_contig75610.17834.1|Name=mRNA_M-pyrifera_M_contig75610.17834.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig75610:21..782- (Macrocystis pyrifera P11B4 male)
CGTCTTGTCTTGCCTTGGTTACGGTTGAGCGTCTATGCAGCTAGATCCTT
AGCAGTTGTTGAAGTGCGTCGTGATCCTCGTTCTGCATCAAGTGGTGATG
AGGAGGTATGTCGATTCTGTGGATCAACTCTAACAGCTGCCAATCGACCA
CCTGGTCCACCAGTTGCTCCTGCAGTTGCCAATGTTTGCACCCAAGAGTA
TTGCCAAGACCGTTCACGAGAAGTCTCGTTGGATATTTTACCTTGCGGTC
ATGCATCGTGTGGATGTCGTGAAGAAGGAGAATGGGGCGAAGAGTGGAAG
TTACCTTGTTTGTTAGGATGTGATGATCCACGCTTGCAAGGACATGATTT
ATGCCCAATTTGTTTCACTGATGAATTATCCCAAGCTCCATGCATTCGTC
TCCGATGTGGCCATGTTGTGCATCGAGCCTGCATGCGAGATGTCGTCCGA
ATTCGCTGGCCATCTGTTCACATGAGTTGGAAGTTTTTGGATTGTCCAGT
GTGTTCAGCAAATCCAGTCGCCCATCCATCCCTCGATGATATCCTTGAGC
CGCTCACAGCTTTACGGGAAGAACACGCCAAGAAGGCCTTGTTGCGATTG
CAATATGAAGATTTGGACAAGCACGAAGATATCGTCACTCCAGGTGCAAA
GTTCTTCAACGATCCCCAAGGATATGCGTTGGACACCTATGCCTACGCCC
AATGCCACAAGTGCTCCAAGCCCTTCTTCTTGGGTCGCAAGGACTGCATG
GTTGCGGGAGTGCGTCTTGTCTTGCCTTGGTTACGGTTGAGCGTCTATGC
AGCTAGATCCTTAGCAGTTGTTGAAGTGCGTCGTGATCCTCGTTCTGCAT
CAAGTGGTGATGAGGAGGTATGTCGATTCTGTGGATCAACTCTAACAGCT
GCCAATCGACCACCTGGTCCACCAGTTGCTCCTGCAGTTGCCAATGTTTG
CACCCAAGAGTATTGCCAAGACCGTTCACGAGAAGTCTCGTTGGATATTT
TACCTTGCGGTCATGCATCGTGTGGATGTCGTGAAGAAGGAGAATGGGGC
GAAGAGTGGAAGTTACCTTGTTTGTTAGGATGTGATGATCCACGCTTGCA
AGGACATGATTTATGCCCAATTTGTTTCACTGATGAATTATCCCAAGCTC
CATGCATTCGTCTCCGATGTGGCCATGTTGTGCATCGAGCCTGCATGCGA
GATGTCGTCCGAATTCGCTGGCCATCTGTTCACATGAGTTGGAAGTTTTT
GGATTGTCCAGTGTGTTCAGCAAATCCAGTCGCCCATCCATCCCTCGATG
ATATCCTTGAGCCGCTCACAGCTTTACGGGAAGAACACGCCAAGAAGGCC
TTGTTGCGATTGCAATATGAAGATTTGGACAAGCACGAAGATATCGTCAC
TCCAGGTGCAAAGTTCTTCAACGATCCCCAAGGATATGCGTTGGACACCT
ATGCCTACGCCCAATGCCACAAGTGCTCCAAGCCCTTCTTCTTGGGTCGC
AAGGACTGCATGGTTGCGGGAGTG
back to top