mRNA_M-pyrifera_M_contig7561.17833.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7561.17833.1
Unique NamemRNA_M-pyrifera_M_contig7561.17833.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7561.17833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7561contigM-pyrifera_M_contig7561:5589..9279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size314
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7561.17833.1prot_M-pyrifera_M_contig7561.17833.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7561 5589..9274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.824253-CDS-M-pyrifera_M_contig7561:5588..56741622816653.824253-CDS-M-pyrifera_M_contig7561:5588..5674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7561 5589..5674 -
1692278100.6285398-CDS-M-pyrifera_M_contig7561:5588..56741692278100.6285398-CDS-M-pyrifera_M_contig7561:5588..5674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7561 5589..5674 -
1622816653.8386998-CDS-M-pyrifera_M_contig7561:7892..80731622816653.8386998-CDS-M-pyrifera_M_contig7561:7892..8073Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7561 7893..8073 -
1692278100.6397393-CDS-M-pyrifera_M_contig7561:7892..80731692278100.6397393-CDS-M-pyrifera_M_contig7561:7892..8073Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7561 7893..8073 -
1622816653.853419-CDS-M-pyrifera_M_contig7561:9232..92741622816653.853419-CDS-M-pyrifera_M_contig7561:9232..9274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7561 9233..9274 -
1692278100.6497567-CDS-M-pyrifera_M_contig7561:9232..92741692278100.6497567-CDS-M-pyrifera_M_contig7561:9232..9274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7561 9233..9274 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.8644662-UTR-M-pyrifera_M_contig7561:9274..92791622816653.8644662-UTR-M-pyrifera_M_contig7561:9274..9279Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7561 9275..9279 -
1692278100.664566-UTR-M-pyrifera_M_contig7561:9274..92791692278100.664566-UTR-M-pyrifera_M_contig7561:9274..9279Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7561 9275..9279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7561.17833.1

>prot_M-pyrifera_M_contig7561.17833.1 ID=prot_M-pyrifera_M_contig7561.17833.1|Name=mRNA_M-pyrifera_M_contig7561.17833.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MRRAAPPAPEPQDNRLINGIRTAYSWENGFTNPRLLYPSIQPLLSDWKLR
INGPVGMEIVPESAILRQSLAHVRSFQGRHYFLSESEGGGFESSGEEGDE
AYF
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mRNA from alignment at M-pyrifera_M_contig7561:5589..9279-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7561.17833.1 ID=mRNA_M-pyrifera_M_contig7561.17833.1|Name=mRNA_M-pyrifera_M_contig7561.17833.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3691bp|location=Sequence derived from alignment at M-pyrifera_M_contig7561:5589..9279- (Macrocystis pyrifera P11B4 male)
GCACGATGAGACGTGCCGCACCGCCAGCGCCCGAGCCTCAAGACAATGTG
AGACCTCGCCCTGCCTTATCCGATATCCCATCTGTTTTGTGGAAGACATA
CTTCCAACGAGGGGGGGGAGAAGGGGGGGTAATTTTTTTTTATGGAAAAG
TGGTCTGTGGGCTGGTGTTGATGCTTGGGGTTTGTCGTGACTCGCTGGTG
CTGGGGTCGTGTTGAAGATCTGAAAGTACGGCTTCACGGCGAAACATCAG
GGCGGCATGCCGCTACGGTATAACTCTATTTTGTGGCCCATAGGGAATCA
TGGGCCGGTGTCAGCATACAGATTTTCGCGTACGCTGGTGATGGCGGTGA
TTCACTAATTATGTGGGTGTTGATACAAAGCCCCCTTCCCGAGATAGTAC
GGCTTCACTGTGCATACACATGTCACACCCAAAGCCTCTCACTCCGTTCC
GTGTACAGTAGACCCAAGGTTTCGATCCACCTCGGTGTGCACTCCACACC
ACAACCATGCAACAAAACAGAACCTGCTTGGAGCATCCGCCCCACATTGG
CGTCGTCGGCAGGAGTGTGCTCAAGACGTCCGGTAGAGAAAGGCGCGCTT
TTTATTTTTTTTCGAGGTCGCGCCAAGCCCGGGTGTGACTTGGTACTCCG
TACTTTCCTTTGCCGCTGTGGTCTTGGTGAGGTTGCCTCACTGGTGTTAG
CATCATTGTCATGATAGCTTTTCTGCCGTGAAGATATGGCCGTACTGTGA
CCATCGCTGCTCACGTGAGGAATCGGTGCCGTGGCAAGGTTGACGCTGCC
ATCTTGCTGTCATCGCCGCTAAGATCGATCGCTGTGTCACCGTGTCAGCA
CCATTCTCGTCGGGTCGATGTTAAGCGTTGTTGCCGAACTAACGCGGCCG
GAACATTATCACAGATGCCGTGCTCAAACGTTCAAACCGGTGTCATGCTA
CGGCGTCAAGTTTGGTATCACCGTTGGTGTTTGGCATCTCCTGGCCAGTA
TACCCCAGTGGGGACCGTGCGCTACTGCTTCTATTGCTGCTTGTACGGCT
ACGTCTACGTCTACCGCTATTGTTACTGCCACTGTTGCTACTGCTACCCT
TGCTACTGTCACTTCCGCTGCTACTGTTGCTGCTACTGCTACTCATGGTT
CGCTGATCCGGCGCTGCCCTACTTTATCTCTCGCGTCACCCTTTCGCTCC
GTGCAGCGATTAATAAACGGCATCCGCACGGCATATTCGTGGGAGAATGG
GTTCACCAATCCCCGGCTTCTGTATCCGTCTATACAGCCGTTGCTAAGCG
ATTGGAAGCTTCGGATTAACGGACCTGTAGGAATGGAAATCGTCCCGGAA
AGCGCGATACTTCGCCAGTCTCTTGCGCATGTTAGATGTGAGTGGTTTGG
AAGAGGCAGTGGGGCTGAATAGGGCCTCCGCAGGGATGTTTCGAAGACAG
CGATATCAGGCCGTCTACGTTGCATTGTTTCTTCTCTGTATATGGCCCTA
TTACTTGTACAAAACCATCCACACATCGGACATATCAGATAGATCATTCC
CGCTTCGTGATTGAGATATTTCAAAAGAAGATACATCTATCTCCGATCTC
GAATGATCTATCTCATGTTGCCAGGTAGGACCCGTATATAATCCGCATGA
TCTGGGACATGTTTCCTGGGATGGATCTGTACGACACAGATCCCACACAG
CCTCTCACAACGTCAGGTGAGGAACTAGATCATCTACATGATCTACAGTA
GATGATGATCTATCTTATCTGTCTTGAGATGTGAATAACTAGTACTGCTT
TGTAGAACGGGTCTGTCGCGCTTGTTTTTTCTCACGAACGGTATGATTTG
TACTCTCCAGCTCAACTGGTAGGAGGAGGTGTTAGCCTCATCGGGCTTCT
GGAGAAGCCGTGGCGCAGGCGTTTTTCCTCCCTCGACCCTGCTATTTTTG
TGTTTCTTATTTTTTACCATCACTTCTACTTCCCAGCCTTTTGCGACATG
CCGGGGTCTTCGACGTCTTCCCGCAGTACTCGCGTTCATTTTTATCGCGC
ATAGACAGGGTCCAGCATCCCACTGCTCGTCGATTTTCATCGTTTTTTTT
TAGGCGACGCTCTCGCGCTTTCCGTGATGAAAAAACGACACATGAAGTAT
TTTTTGGGTTATTGCGAACCCGCTGGTGATGGAACCCCGGCCCTCGTACG
CTTTCAACGTTAATATAACGGAGGACTACAGTAAATATGACCAAATATTG
TTAGTAAAAACAGGTGAGTATATAGATTTTCATGTATACCATAGGTCCTA
TGAACTATGGTCCCCCGCAATAGTAGTGTTCGAGGTTAAAGGCACGTTTT
AACGAAGAAAAATTAATCTAATTCAACTTTTTTTAATTGGATTGGATTTA
ATTCGCTTACGTATGATTGTTGAATAAAATGAATCACAATCAACAAGAAA
GCATTCTTATTTTGGGGTGAGGGAAATCCAATTTAATCCAATAGACAAAG
AACCCCCAAAATACTATTGTTTTGTGTAAAATGGAATTGGATCGAATCGA
ATCGGAGGAGTTGATCCAACTTGACATGTTCAGATTGGGCCAACGTCCCC
GAGTCATTCCGTCGGCTGTTTGGGCTTTGTCGATGACCACGACCGAGGCG
ATACATCGTGAACCTGAACGAATGACGACTGGGGCAACAGCCGCGCCCAC
GCCTATATAGACCCAACCGCAGCGTACCCCGGCGTTGGCGCCTCAAAATA
AATCATGGCGATCGACCAAACCCCACGAGAAGCGGAGGATTTGCTGAAGA
CATCGATAGCCTCATCGCCATAGCTGTTCCTCGCGTGGCTTTTTAGGGCT
CCCGCTTCTCACCCAAGAGACCCTGAAAGTAGATAGCTGCGTTGTCTGCG
CCGCTCAAGACAAAAAGAGGCTGGCGGCGGCGCGCGCGCGACCCCCCGTG
CCGTCGCCCTCGTCTACTACAGTACGTATCGTCGATGTCTTTTTTCGTCA
GCGGGGCGTTGCGTGACGTGCTGCGTTGTTCCGCGTTAATCCGATTTCAT
ACCGATTTGAAGAACCACACGTGGTTTCCGGATAGGACCCAAAACCCAAT
TTTCCCATCAAATCCTGTTCAAAAAGTTGAATTGGGTTCGTTTATTTTCT
TCGTTGAAAGAGGCCCTAGCCAGCAGGCCGCCGGGGTGACCGGTGTGGTA
GGCTTGAGTGGAACTGGGCCATTCGCCCGAGTAATGCGTTTCTCCGCGCA
ACTTCCCAACCAGCCAGATGATGCGCGCGAGAACTCGAGAACAAATCGAC
TGTGAGATTGGAAGTCCCTTTTTTTAGCACTTCTTCCCTCTTTCCCCCCC
GTCGTGGCTGGGGACTAATGTACGTACGTAAGCACATATCATCTTCTCCA
GAAACATGAGGACGACTTGGGTATACGTGATATAACCCAAACAATCCATA
CGTTTCCGGGCAGAGGGTTTTCAAGTTCAGCTCTCAAAAGAGTCCTTGCG
TTACCGGACAGAGAGAGAGTGGCCTGTGTTATGTGCGATGCCTGCACGTC
CAAAGTCTGACCATCCCGCATGTTTTCTTCTCGCGAAACAAACCTGTTAT
CGCAGCTTTTCAAGGTCGGCATTACTTCCTGAGTGAAAGCGAAGGCGGGG
GGTTTGAATCGTCCGGAGAGGAAGGTGATGAAGCATATTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7561:5589..9279-

>mRNA_M-pyrifera_M_contig7561.17833.1 ID=mRNA_M-pyrifera_M_contig7561.17833.1|Name=mRNA_M-pyrifera_M_contig7561.17833.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig7561:5589..9279- (Macrocystis pyrifera P11B4 male)
ATGAGACGTGCCGCACCGCCAGCGCCCGAGCCTCAAGACAATATGAGACG
TGCCGCACCGCCAGCGCCCGAGCCTCAAGACAATCGATTAATAAACGGCA
TCCGCACGGCATATTCGTGGGAGAATGGGTTCACCAATCCCCGGCTTCTG
TATCCGTCTATACAGCCGTTGCTAAGCGATTGGAAGCTTCGGATTAACGG
ACCTGTAGGAATGGAAATCGTCCCGGAAAGCGCGATACTTCGCCAGTCTC
TTGCGCATGTTAGATCGATTAATAAACGGCATCCGCACGGCATATTCGTG
GGAGAATGGGTTCACCAATCCCCGGCTTCTGTATCCGTCTATACAGCCGT
TGCTAAGCGATTGGAAGCTTCGGATTAACGGACCTGTAGGAATGGAAATC
GTCCCGGAAAGCGCGATACTTCGCCAGTCTCTTGCGCATGTTAGATCTTT
TCAAGGTCGGCATTACTTCCTGAGTGAAAGCGAAGGCGGGGGGTTTGAAT
CGTCCGGAGAGGAAGGTGATGAAGCATATTTTCTTTTCAAGGTCGGCATT
ACTTCCTGAGTGAAAGCGAAGGCGGGGGGTTTGAATCGTCCGGAGAGGAA
GGTGATGAAGCATATTTT
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