mRNA_M-pyrifera_M_contig756.17830.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig756.17830.1
Unique NamemRNA_M-pyrifera_M_contig756.17830.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig756.17830.1 vs. uniprot
Match: D7G4T9_ECTSI (Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T9_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 7.270e-37
Identity = 149/166 (89.76%), Postives = 157/166 (94.58%), Query Frame = 1 
Query:    1 MAAPPKPLSVDIHTSVKEGDMAKVMEFLEEGGDVNVRCRYRTIPLHRAAAYNHADIANLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHDTMDADANEPGEDFEPTVAESLRSEIRSMIESA 498
            MAAPPKPLSVDIHTSVKEGDMAKV+EFLEEGGDVNVRCRYRTIPLHRAAAYNH DIA+LL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    MD DANEPGED EP+V E++RS+IRSMIE++
Sbjct:    1 MAAPPKPLSVDIHTSVKEGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIASLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDVDANEPGEDSEPSVPENVRSQIRSMIENS 166
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig756.17830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4T9_ECTSI7.270e-3789.76Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=28... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig756contigM-pyrifera_M_contig756:16425..22635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue2.8e-29
Seed eggNOG ortholog2880.D7G4T9
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-20_000380.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons4
Model size501
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig756.17830.1prot_M-pyrifera_M_contig756.17830.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig756 16425..22635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.5925345-CDS-M-pyrifera_M_contig756:16424..165401622816653.5925345-CDS-M-pyrifera_M_contig756:16424..16540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig756 16425..16540 +
1692278100.47475-CDS-M-pyrifera_M_contig756:16424..165401692278100.47475-CDS-M-pyrifera_M_contig756:16424..16540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig756 16425..16540 +
1622816653.6033127-CDS-M-pyrifera_M_contig756:19219..193071622816653.6033127-CDS-M-pyrifera_M_contig756:19219..19307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig756 19220..19307 +
1692278100.4855845-CDS-M-pyrifera_M_contig756:19219..193071692278100.4855845-CDS-M-pyrifera_M_contig756:19219..19307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig756 19220..19307 +
1622816653.615781-CDS-M-pyrifera_M_contig756:21235..213521622816653.615781-CDS-M-pyrifera_M_contig756:21235..21352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig756 21236..21352 +
1692278100.4936135-CDS-M-pyrifera_M_contig756:21235..213521692278100.4936135-CDS-M-pyrifera_M_contig756:21235..21352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig756 21236..21352 +
1622816653.6290762-CDS-M-pyrifera_M_contig756:22455..226351622816653.6290762-CDS-M-pyrifera_M_contig756:22455..22635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig756 22456..22635 +
1692278100.5051148-CDS-M-pyrifera_M_contig756:22455..226351692278100.5051148-CDS-M-pyrifera_M_contig756:22455..22635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig756 22456..22635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig756.17830.1

>prot_M-pyrifera_M_contig756.17830.1 ID=prot_M-pyrifera_M_contig756.17830.1|Name=mRNA_M-pyrifera_M_contig756.17830.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MAAPPKPLSVDIHTSVKEGDMAKVMEFLEEGGDVNVRCRYRTIPLHRAAA
YNHADIANLLLDKGADIEARDGAGHSPLFWASRGGHDDMVTLLLSRGAHI
NAEDKKERTPLHEAARHGRKDTCALLLKRGAKHDTMDADANEPGEDFEPT
VAESLRSEIRSMIESA*
back to top

mRNA from alignment at M-pyrifera_M_contig756:16425..22635+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig756.17830.1 ID=mRNA_M-pyrifera_M_contig756.17830.1|Name=mRNA_M-pyrifera_M_contig756.17830.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6211bp|location=Sequence derived from alignment at M-pyrifera_M_contig756:16425..22635+ (Macrocystis pyrifera P11B4 male)
ATGGCTGCCCCACCAAAGCCTCTCAGCGTGGACATTCATACCTCCGTGAA
AGAGGGCGACATGGCGAAAGTGATGGAGTTCTTGGAGGAGGGGGGTGACG
TGAACGTGCGTTGCAGGTGTGTCGACAACAACACACTGCTTGTGCTTGTA
CATTCGCTGTTTAAAGTTTTGAATTTTCACCGCTTACGTATGCATGAAAC
CATGCTTTTGGTGGTGTAACATCGTCAAGCAAGTACGCTGTGCCTCGAGG
TGGTTTCGAGAGATCCGAACTGCTAGACGTACAAGTAGACTGCACTGCTT
TTGTCTGCCGTAATATTTGAAAGTAACTGCGGCGTGTTCCCGAGTACAAC
TCACACGACGTAAAAATGTGTGCGTGGGGAGAGAGAGTTGGGTACCAAGT
ACCCGGTATTCGGTTCGACATTTGCAGGGATCATCTCGGAACATGCTAGT
ATGCCAGTGATAAAGCGGTCTTACCTCTGAATCGCTCGTATCCCCGCCCA
CGAGCAATTTGATGTCGTCCCGGGATAAGAGCGAAAACCTTTCTCAACCC
TACTATTACTGCAGTTCCGTTTTGGGGACAAATTACTCAGAATTTGGGTA
GATTGTCCCCAAAGTGGGATTGCAGCTCAAAAAGGGTTAAATCGGAACAT
ATTTGTGCTCGAAGCGCGCAAAAGCTCGCAGCGCGGAAAAATCGGGCGAA
GCCTGGTTACTCTACATGTATTAATAGTAGCTTCCATACCTCAGCCGAAT
TTCCATATCACGTGTCTTAAGTGCGGTTGCTGGGCACCGGCACAGTATGT
ACTGGCAGTATATAGTAGTTTACTGTTGGTACTACGGTAGTCTACTGGTT
GACCTGCCCTGGCCAGTATATTCGCCTGTAGTTTTTTTTATGTTACGTAC
CTCCAAGAAACACGCCATATTATAATACCAAAACCCACTAAATTCGTTTC
GAGAGGAGAGAATAGAGACGAGAGGCTGTAAGTATACTGCAGTCCAGTAC
ACTGATTGACTTTGACAACGGTATGATCGCTTCTGAATGAGTCAGCCAGT
GCCCAGCCCTACTGTAGGTCTCTCCTATTCTGGACGCTCTTAAATCGGGT
ACCCCACTGTGCGTGGCAAAGCAGCGCGAGCAAAGGACTCACTCAACGCG
CAGATACATGTCTTCGTTCTCTTGAATGTTGCGTGCAGAGTTGAAAAAGG
GTCGACGTTGTTAGCAGACGTCATCGCTTAAAGACAAACCGGGTGGGTGT
TCTTTATTATTTGATAGTGTTTGTCGTAGAAATTCCAGTAGACTACTATG
GCAATAGAGCCTGCGCTTCGAGAAACTCGGAAACATCGTAAACAAGGTGC
GGCATCATCATTGGGCTATGAGTTTACCTCGTGCCTGTTGCTACCCAAAA
TCAGATGGGGTGACTATGTACGGTGGCTGTAAATCAGACTATTTTTTCCT
GTACCCCTGAGTAGATGCCGTTGCGCAGCAAGTACTATTTCGCGTCGTAC
ACGGTGCATATAGAGTAGTAGACAGAATATGGCGGATAGAGTGGACGTCA
CTATCAATAGATGACACGCAGTCGACACCACAAGATGGCATACAAGTGCG
TCATATGAAAAGTTGCAGCAGTCATCAAGTAAGCGCAAATTCGTGCGCGC
AAGAAACACAACAGGGGCACGCAAGTAACTTTGTATATGAAGTCTTGAAA
ACGAAAATAAGGGGAGCGGGCTAGATGGCGGACAGAGTAGACGCCACAAG
ATGACACGCAGCTGCCACCATGAGATGACCACAACATGACATACAAGCGT
ATTTCGTGACAACACAACACACAGCAGTCAGCAAGGAAGCACAAATTTAC
GCGTTGAAGCAGCACAAAAAGGGAGGTCCGCAAGGATGCATAGAACTTTA
GAACAAAAAGAAGGGGAGCAGGCTCCATGCTGCCTGCGCCTGAGCTGTTT
CAGTCCCTACGAGTTCAGCATTTCTACTTGTATTGCGTGCCCTGATCGTC
TACGGGTACGTCGTGCTGGTATATACTTACGTTTCTCCCCTGGTATCCAA
TATATGGTGCCGCTAATATACTGTTGTTGTAGATTCTGCTATAAACCGTA
ACCCTTTTCTGACCCAGAGGTAGCGATATATAAATCACGAGTTTACTTTT
ACCAACCGTCGATGGGTAGTGAGAGCGAGCAATAGTATGGGTAGCTTCAT
GCTGCGCCCCGAGACGTTCAACTTCTTAGATCGTAGTTTGTTGGACCCTA
AATGTATCAAGCCCCTACCAAGCAATGCCCGGTGCGGTACCTACTGGTCG
TTTTTTGTTTTACGTCAGCCTTTCTTTCGGCGGTCAAGCAAGTAGGGACG
CTTGTGTTTCCCCCATCAAAAGTTGTATCCAAACCACGTAGAGCCAAACC
TAATCGTCCACACAATCGGTCAACTCCAGACTAGCTCCCCCCCCCTCCCC
CGTCAACGCAAGTGTTGCATGAAACCCGCGTCATTTCCCCCCCTCTTCCA
TCTCACAGTCCCGATCCCCCCCCCTCCTCCCTCGTTCTCTACCCCCGCTG
ACACCGGCCAACGCTTCCATAGGCGGTAGGTACGGAAGTGCACTAGGAAA
TGGAAACCACGACGGCCGCTTCGACGAACGGCAACTTCCACGCGGTTGCT
GCTTGCTGTAGCAGCTATCAGACTCAGTGCCTGACAACGATCGCAATGGA
CTACATACATTAGGAACGTTTTTCTTGCTCCAGTGTATGAATCCGAGCGT
CTATTGACGTCGCCGCGTGTCGTCCGAACTGCCTTACGCTGGCAGGTACC
GAACGATCCCGCTGCACAGAGCCGCGGCATACAACCACGCCGACATCGCC
AACCTTTTGTTGGACAAGGGTGCAGACATAGAGGTAACCAACTTCGTACA
GCACTCACGTGTTCTCTTGCGTTCTTCTCCTTTTGGTGTGGTTTATTCCA
CCTTTGCATGATGCGGTCCCCTAGACATCTACTGGACTTCGTGCCGTGTA
CGTGTTTGATGCCTGGCACGTGCGTGCGCTAGGTAACCCCCCTCTTACGT
ATTTTCTTGGGGTGTACGATTGGCTTCAGATATATATATTTGTGTGTCAC
ACGTTCCCGGGGGTAGTCTTGCACTCCGGAGTTGCTGGAGCCTGGCTTGT
GAACCCAGACCAACGGCGAGTGAATGTTGGTGGGAAGTAACTATTTTTGC
AGGCGGCGGCCGACGGTTTCGGCATTCTCATCGTTCGCGTTTTTTGTGAG
GCGAAAAAAGGGAGAAATAAAAGGGTAACAAGCAGCATCGATACTTGTGT
CGAACACAACTGAGTCAATAGGGGACGATGCAGTGTCGCACCCGGGCTCA
CAGCGCGAAGAGCTCATCAACACACTATTTCGGGGGACCATAGCAAGTAG
GACCCGCAGTACACACAAAAAGCCTATATATTTTCCTACTTTTATTAACA
ATGTTTGGTCCTATTTACTATGGTCCCCCCAGTAGAAACTTTTATATAGT
ACTCGTAGTGCAGACCTCTGACCCTAAGAGGATTGCAGTTGTGATAATTC
CTTCTCGTGTGATATTTCGGGGGGCCATAGTGAGTAGGACCAAATATTGT
TAGCAAAAATGGATGAATATATAGGTTTTTGTGTGTACCGTAGGTTCTAT
TCACTATGGCCCCCCGTAATAGCCATCCAACAACTTGTAGCATGTAGTTT
AGGGTCGACCATCCATGTGCACAACTGCGAAAAGAAAAATGAACAGGGAC
GTATTAATCGCATGAAGGCACCAAAGCCTGCGTCGTTTTCGACCTTCCCG
TCAACACAATCACGCTAGTTTTCCTGCGCGCCGATTCTTAAGGCATCTTC
CTGGGGCTATCTATTGCTGTAAATTCGTACCTGGCATGTAGCGTAGCGTC
GTTGTCGCTCCAGATCAAACCCCGCGAACGGTGCGGTCGACCTACACCAC
TAGAGTATCGTCACTGTTACCGCCACAGTTACCTTCACAGTTACGGGTGC
CGTCACCGTTACCGTTACTATTACCGTTACCGTTATCGTTACCGCTCCTA
TTACCGTTGCCGTTACCGCTGTCGTTTCCGTTACCGTTACCGCTACCATT
ATATTACCGTTGAAGTTACCGTTACCCCCCCCCCCCCCTCCCGTATCGAA
GCTGCCCCTCTTTACATCGTGACTCCTGACCATCGTCTTGTTATTTCTGT
GCCTACAATGTTGCTATTCAGGAATTGATGTTGTGTATTGGTCTTATGGA
CCTGGCATCTTGCTCGGTAGTACGAGTACCTGGTAACTGATGTGTTGCTC
TATATTACCGGGTAACTGATGTCTCACTCGATAGTGACTGATACCGGTAT
ATAGTTAACTGGAGACTGATGCCTTGCTCGTTATGGAATCCATGTCTTGG
GCTTAGGGGGCTGATATCTTGGTATCGAGAAATGTGCATCTTGTTGCGTA
ACAGGTAGGAACATTCACCTTGCTCTTCAAGATTTCCTTATTAGGACGTG
ACACCTTGCTCTTTAGGACATTTCTCGTTAGAACACGATACAGCGCTCTT
GAGGAGCAAATCTACTGTTGTCTTACTCTTTAGGTACTATTAATAGTATA
CACATATCAGTCGGCATTTATATGTACCGCTCGTTGAGAACTGATGGGTC
ACTCTTCAGGGTATGATAGGTCTCACAGGTTTCGATTTAACTGCCACCGC
TATAACTGCCACTGTTGTACCTGCCACCGCTGTAACTACCACCCACCGCT
GTAGCTGCCACCGCTGTAACTGCCACTGCCGTAACTGCCGCCGCTAACTG
TACCAATGCAGGCACGCGATGGAGCGGGACACTCCCCTTTGTTCTGGGCG
TCGAGAGGGGGGCACGACGACATGGTCACCCTCCTTTTATCCCGGGGGGC
GCACATCAACGCCGAGGACAAGAAAGAGGTGCGGAACTTTTTATTTATCT
TTTCGTTTTTTTCACCCGTCTGCTACGATGGGGGTACCTACGTAATACCA
ACTATTTATGAGCATCCTCACTTGAAAAGTCGTGAATAAGTCACCCAAGA
CTGCCTGTAAGATAATAGGTAGGCTTGCCCCCATGGACAATCCGATAGAC
CAGGGCTTGAACGACTCGCACTATGCGACACAAATGGGATATATACTGCA
GGGTAATTACGGGGTAATTTTGTGAGTCGAGAGGCCCCCGTCGCTCAGAA
AATAGCGTCGGCGCCCGTGAGCTCCGTTCACATCTTTAATGCTCCGGCGG
GTGGCTGAAAGTGTGCCTCAGGCTCACAGCATCTGTGTTAGCGACACGTC
GTGGTTGCTGAAAGCAACCCATGTTCCTTTCTCGTGTTTTTTTGGGGGTG
ACGATGTCGCAGCAGGCTGTATGAGATCATCATCCTCCGGCGGATGGATA
GGAATATACCTCTGGCTCACAGCATGCTTATTAGCAACACGCCTTGGTCG
CTGAGAGCAACCCATGTTCCTCTGTCGTGTTTTGGGGTGACGATGTGGGA
GCAGGCTGTACAAGCAAGGTAGATCGGACCACATCATGTGTTTTTTCGTC
CACCATGATACCTAGCACAGGCCTAGTGGCGCACCCTGTCCAGGCACGAT
GCCCAAGCACATCTTCCAAGCGTCCTGTCGAGGAGGCGTAACTCGGGCTA
TGTGTTCACGCTCCTTAATCCGCTCTCGAAGCATGGTGCGGTTCGAGGAG
CCTTCATTTCGGGCGACGTCATATTTTTTGTCCTTGCCTCGCGAGCATAG
ACGGTAGTAGCTGTAGATGTGAGCGGGTGACATGGAGCGAAGTGACCGCT
TGTCGAATTCGGCGAGCATTTGTTGCAGCATACGCTATGCCCCCCGAAGA
CCTTGACGATCACCCTTATTGGCCTTGAGGCTGATAGTATAACGCAGCCC
TCCCTGTCTCCCTCACTCCCTCTCTCCCTCCCCCCCCCCCTTTCTCCCAC
CCTCCCTCCACCTCTCTACAACCCCCCCCACCCCCGCACGCTTTTGTCAT
ACCATATAAACCCTGGTCGCGTTCTTCACAGCGGACACCATTGCACGAAG
CCGCGCGGCACGGCCGGAAAGATACTTGCGCGCTTCTGCTCAAGCGGGGC
GCGAAGCACGACACAATGGATGCCGACGCCAACGAGCCGGGGGAAGACTT
CGAGCCGACCGTAGCAGAAAGCCTTCGCAGCGAAATTCGGAGCATGATCG
AGAGCGCATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig756:16425..22635+

>mRNA_M-pyrifera_M_contig756.17830.1 ID=mRNA_M-pyrifera_M_contig756.17830.1|Name=mRNA_M-pyrifera_M_contig756.17830.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig756:16425..22635+ (Macrocystis pyrifera P11B4 male)
ATGGCTGCCCCACCAAAGCCTCTCAGCGTGGACATTCATACCTCCGTGAA
AGAGGGCGACATGGCGAAAGTGATGGAGTTCTTGGAGGAGGGGGGTGACG
TGAACGTGCGTTGCAGATGGCTGCCCCACCAAAGCCTCTCAGCGTGGACA
TTCATACCTCCGTGAAAGAGGGCGACATGGCGAAAGTGATGGAGTTCTTG
GAGGAGGGGGGTGACGTGAACGTGCGTTGCAGGTACCGAACGATCCCGCT
GCACAGAGCCGCGGCATACAACCACGCCGACATCGCCAACCTTTTGTTGG
ACAAGGGTGCAGACATAGAGGTACCGAACGATCCCGCTGCACAGAGCCGC
GGCATACAACCACGCCGACATCGCCAACCTTTTGTTGGACAAGGGTGCAG
ACATAGAGGCACGCGATGGAGCGGGACACTCCCCTTTGTTCTGGGCGTCG
AGAGGGGGGCACGACGACATGGTCACCCTCCTTTTATCCCGGGGGGCGCA
CATCAACGCCGAGGACAAGAAAGAGGCACGCGATGGAGCGGGACACTCCC
CTTTGTTCTGGGCGTCGAGAGGGGGGCACGACGACATGGTCACCCTCCTT
TTATCCCGGGGGGCGCACATCAACGCCGAGGACAAGAAAGAGCGGACACC
ATTGCACGAAGCCGCGCGGCACGGCCGGAAAGATACTTGCGCGCTTCTGC
TCAAGCGGGGCGCGAAGCACGACACAATGGATGCCGACGCCAACGAGCCG
GGGGAAGACTTCGAGCCGACCGTAGCAGAAAGCCTTCGCAGCGAAATTCG
GAGCATGATCGAGAGCGCATGACGGACACCATTGCACGAAGCCGCGCGGC
ACGGCCGGAAAGATACTTGCGCGCTTCTGCTCAAGCGGGGCGCGAAGCAC
GACACAATGGATGCCGACGCCAACGAGCCGGGGGAAGACTTCGAGCCGAC
CGTAGCAGAAAGCCTTCGCAGCGAAATTCGGAGCATGATCGAGAGCGCAT
GA
back to top