mRNA_M-pyrifera_M_contig75486.17811.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75486.17811.1
Unique NamemRNA_M-pyrifera_M_contig75486.17811.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: A0A2P4XIG5_9STRA (Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIG5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.930e-27
Identity = 54/111 (48.65%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 LAGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVTGPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPLG 333
             + TPHPSE F +GTN+AY+EEMY  W+ +P +VH SWD YFR IE+G+ PG AF  PP +   VT       +GG   +S E + A+ + +L+R++Q  GH AA LDPLG
Sbjct:   42 FSSTPHPSETFMTGTNNAYVEEMYSNWKSNPSSVHKSWDVYFRQIESGSVPGEAFIPPPTIQQGVT---PVRSVGGAVASSTEQNDALGLSYLIRAYQVRGHEAANLDPLG 149          
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: A0A662X7L4_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7L4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.300e-27
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 LAGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVTGPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPLG 333
             + TPHPSE F +GTN+AY+EEMY  W+ DP++VH SWD YFR IE+G+ PG AF  PP +   VT          GG  SL+ + A+ + +L+R++Q  GH AA LDPLG
Sbjct:   43 FSSTPHPSESFMTGTNNAYVEEMYSSWKTDPQSVHKSWDVYFRQIESGSVPGEAFIPPPTIQAGVTPVRSV-----GGAPSLDQNDALGLSYLIRAYQVRGHEAANLDPLG 148          
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: A0A8K1CNT5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNT5_PYTOL)

HSP 1 Score: 112 bits (279), Expect = 2.240e-26
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 LAGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVTGPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPLG 333
             + TPHPSE F +GTN+AY+EEMY  W+ +P++VH SWD YFR +E+GA PG AF  PP +   VT   V    G    +S++ + A+ + +L+R++Q  GH AA LDPLG
Sbjct:   35 FSSTPHPSETFLTGTNNAYVEEMYATWKTNPQSVHKSWDVYFRQVESGAVPGEAFIPPPTIQSGVT--PVVSSRGVATASSVDHNDALGLSYLIRAYQVRGHEAANLDPLG 143          
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: A0A7S1GG60_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GG60_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.560e-26
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   22 SEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVT---GPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPL 330
            SE F +G++S Y+EEMYRLW++DP  VHASW  +FRN++AGA PGAA++ PP +   VT   GPS A G  G   T +    + R+LHL+R+FQ  GH AA+LDPL
Sbjct:    1 SEAFLTGSSSVYVEEMYRLWKEDPGYVHASWGVFFRNVDAGAAPGAAYTPPPDLQPGVTSTAGPSPAAGTAGADTTGV----SARLLHLIRAFQVRGHEAAELDPL 102          
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: K3WND9_GLOUD (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WND9_GLOUD)

HSP 1 Score: 110 bits (276), Expect = 5.700e-26
Identity = 52/111 (46.85%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 LAGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVTGPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPLG 333
             + TPHPSE F +GTN+AY+EEMY  W+ +P++VH SWD YFR +E+GA PG AF  PP +   V  P  + GL     +S++ + A+ + +L+R++Q  GH  A LDPLG
Sbjct:   42 FSSTPHPSETFLTGTNNAYVEEMYDSWKTNPQSVHKSWDVYFRGVESGAVPGEAFIPPPTIQSGVK-PVQSVGLAAASASSVDHNDALGLSYLIRAYQVRGHEVANLDPLG 151          
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: M4BQB2_HYAAE (Oxoglutarate dehydrogenase (succinyl-transferring) n=25 Tax=Peronosporaceae TaxID=4777 RepID=M4BQB2_HYAAE)

HSP 1 Score: 109 bits (273), Expect = 1.450e-25
Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 LAGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVTGPSVAGGLG---GGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPL 330
             + TPHPSE F +GTN+AY+E+MY  W+++PK+VH SWD YFR +E+G+ PG AF  PP +   VT     GG G       +S E + A+ + +L+R++Q  GH AA +DPL
Sbjct:   41 FSSTPHPSETFMTGTNNAYVEQMYSHWKENPKSVHTSWDVYFRQVESGSVPGEAFIPPPTIQKGVTPVQSVGGTGFSSSPSSSSSERNDALGLSYLIRAYQVRGHEAANMDPL 153          
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: A0A2D4CF32_PYTIN (Purple acid phosphatase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF32_PYTIN)

HSP 1 Score: 108 bits (271), Expect = 2.690e-25
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    4 AGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVTGPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPLG 333
            A TPH SE+F +GTN+AY+EEMY  W+ DP +VH SWD YFR IE GA PG AF  PP +   VT P V+         SL+ + A+ + +L+R++Q  GH AA LDPLG
Sbjct:   18 ATTPHASEMFLTGTNNAYVEEMYSSWKTDPSSVHKSWDVYFRQIERGAVPGEAFIPPPTIQSGVT-PVVS---TAASAASLDHNDALGLSYLIRAYQVRGHEAANLDPLG 123          
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: A0A2D4BHY1_PYTIN (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHY1_PYTIN)

HSP 1 Score: 108 bits (271), Expect = 2.760e-25
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    4 AGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVTGPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPLG 333
            A TPH SE+F +GTN+AY+EEMY  W+ DP +VH SWD YFR IE GA PG AF  PP +   VT P V+         SL+ + A+ + +L+R++Q  GH AA LDPLG
Sbjct:   42 ATTPHASEMFLTGTNNAYVEEMYSSWKTDPSSVHKSWDVYFRQIERGAVPGEAFIPPPTIQSGVT-PVVS---TAASAASLDHNDALGLSYLIRAYQVRGHEAANLDPLG 147          
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: A0A1C7M5V6_GRIFR (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7M5V6_GRIFR)

HSP 1 Score: 108 bits (269), Expect = 5.000e-25
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    4 AGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVTGPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPLG 333
            A +P P+++FA+GTNS Y+EEMYR WR+DPK+VHASWD YF  +E G P   AF  PP +    T   +A  L  GGG   ELD  +++  LVR++Q  GH  A LDPLG
Sbjct:   33 ASSPSPNDLFANGTNSYYVEEMYRRWREDPKSVHASWDVYFSGMEKGLPSARAFQPPPSIM--PTPADIAPALHAGGGA--ELDDHLKVQLLVRAYQVRGHHVADLDPLG 138          
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Match: A0A5D6YEX1_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEX1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.030e-25
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 LAGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAPPGAAFSAPPQVSGSVTGPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTHGHLAAKLDPLG 333
             A  PHPSE F +GTN+AY+EEMY  WR +P +VH SWD YFR +E+GA PG AF  PP +   V  P V+    GGG ++ + + A+ + +L+R+FQ  GH  A LDPLG
Sbjct:   91 FATGPHPSETFLTGTNNAYVEEMYDSWRSNPASVHKSWDVYFRGVESGAVPGEAFIPPPTIQSGVK-PVVS---VGGGVSAADHNDALGLSYLIRAFQVRGHEQANLDPLG 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75486.17811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4XIG5_9STRA5.930e-2748.65Oxoglutarate dehydrogenase (Succinyl-transferring)... [more]
A0A662X7L4_9STRA6.300e-2749.55Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A8K1CNT5_PYTOL2.240e-2647.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1GG60_9STRA5.560e-2652.83Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
K3WND9_GLOUD5.700e-2646.85Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
M4BQB2_HYAAE1.450e-2546.02Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A2D4CF32_PYTIN2.690e-2550.91Purple acid phosphatase n=1 Tax=Pythium insidiosum... [more]
A0A2D4BHY1_PYTIN2.760e-2550.91Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A1C7M5V6_GRIFR5.000e-2550.91Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A5D6YEX1_9STRA5.030e-2549.55Oxoglutarate dehydrogenase (succinyl-transferring)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75486contigM-pyrifera_M_contig75486:709..1050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog4792.ETI37116
KEGG rclassRC00004,RC00027,RC00627,RC02743,RC02833,RC02883
KEGG koko:K00164
KEGG ReactionR00621,R01933,R01940,R03316,R08549
KEGG Pathwayko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2-oxoglutarate dehydrogenase N-terminus
EggNOG OGs3QE1R@4776,COG0567@1,KOG0450@2759
EC1.2.4.2
COG Functional cat.G
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816652.9039843-CDS-M-pyrifera_M_contig75486:708..10501622816652.9039843-CDS-M-pyrifera_M_contig75486:708..1050Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75486 709..1050 +
1692278100.1937938-CDS-M-pyrifera_M_contig75486:708..10501692278100.1937938-CDS-M-pyrifera_M_contig75486:708..1050Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75486 709..1050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75486.17811.1prot_M-pyrifera_M_contig75486.17811.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75486 709..1050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75486.17811.1

>prot_M-pyrifera_M_contig75486.17811.1 ID=prot_M-pyrifera_M_contig75486.17811.1|Name=mRNA_M-pyrifera_M_contig75486.17811.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
LAGTPHPSEVFASGTNSAYMEEMYRLWRQDPKAVHASWDTYFRNIEAGAP
PGAAFSAPPQVSGSVTGPSVAGGLGGGGGTSLELDKAVRMLHLVRSFQTH
GHLAAKLDPLGRNV
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mRNA from alignment at M-pyrifera_M_contig75486:709..1050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75486.17811.1 ID=mRNA_M-pyrifera_M_contig75486.17811.1|Name=mRNA_M-pyrifera_M_contig75486.17811.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig75486:709..1050+ (Macrocystis pyrifera P11B4 male)
TTAGCTGGAACCCCTCATCCTTCTGAAGTGTTTGCATCTGGAACCAACTC AGCTTACATGGAGGAGATGTATCGGCTGTGGCGACAAGATCCCAAGGCAG TACATGCATCTTGGGACACGTACTTTCGAAACATTGAAGCTGGAGCACCA CCTGGAGCTGCTTTTTCCGCACCTCCGCAAGTTTCTGGTTCTGTGACAGG TCCTTCGGTTGCCGGTGGGTTGGGAGGTGGAGGTGGGACTTCTTTGGAGC TCGACAAAGCAGTTCGCATGTTGCATTTGGTTCGCTCGTTTCAGACACAT GGACACTTGGCTGCTAAGTTAGATCCCCTAGGACGTAATGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75486:709..1050+

>mRNA_M-pyrifera_M_contig75486.17811.1 ID=mRNA_M-pyrifera_M_contig75486.17811.1|Name=mRNA_M-pyrifera_M_contig75486.17811.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig75486:709..1050+ (Macrocystis pyrifera P11B4 male)
TTAGCTGGAACCCCTCATCCTTCTGAAGTGTTTGCATCTGGAACCAACTC
AGCTTACATGGAGGAGATGTATCGGCTGTGGCGACAAGATCCCAAGGCAG
TACATGCATCTTGGGACACGTACTTTCGAAACATTGAAGCTGGAGCACCA
CCTGGAGCTGCTTTTTCCGCACCTCCGCAAGTTTCTGGTTCTGTGACAGG
TCCTTCGGTTGCCGGTGGGTTGGGAGGTGGAGGTGGGACTTCTTTGGAGC
TCGACAAAGCAGTTCGCATGTTGCATTTGGTTCGCTCGTTTCAGACACAT
GGACACTTGGCTGCTAAGTTAGATCCCCTAGGACGTAATGTGTTAGCTGG
AACCCCTCATCCTTCTGAAGTGTTTGCATCTGGAACCAACTCAGCTTACA
TGGAGGAGATGTATCGGCTGTGGCGACAAGATCCCAAGGCAGTACATGCA
TCTTGGGACACGTACTTTCGAAACATTGAAGCTGGAGCACCACCTGGAGC
TGCTTTTTCCGCACCTCCGCAAGTTTCTGGTTCTGTGACAGGTCCTTCGG
TTGCCGGTGGGTTGGGAGGTGGAGGTGGGACTTCTTTGGAGCTCGACAAA
GCAGTTCGCATGTTGCATTTGGTTCGCTCGTTTCAGACACATGGACACTT
GGCTGCTAAGTTAGATCCCCTAGGACGTAATGTG
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