mRNA_M-pyrifera_M_contig7546.17803.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7546.17803.1
Unique NamemRNA_M-pyrifera_M_contig7546.17803.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: A0A835YX65_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.870e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVASTNRGCKAI QGGG R+ +LKDGITRAPCLRMPD + AA +K+W E   NF  +KAAFE+TT+FG
Sbjct:  250 GCLVASTNRGCKAISQGGGARSVVLKDGITRAPCLRMPDTIGAARVKQWVEAPANFARVKAAFESTTSFG 319
[Close]
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: A0A7S1Y0Q7_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.350e-23
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVASTNRGCKAI   GG RA +LKDGITRAPC+ MP AMAAA LK W E+ +NF AI+ AF +TT+FG
Sbjct:  126 GCLVASTNRGCKAITACGGARARVLKDGITRAPCILMPSAMAAADLKAWVEEPENFQAIQNAFNSTTSFG 195
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BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: A0A7S2EB74_TRICV (3-hydroxy-3-methylglutaryl coenzyme A reductase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB74_TRICV)

HSP 1 Score: 101 bits (252), Expect = 1.700e-23
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVAS NRGCKAI QGGG R+A+++DGITRAPC+RM  AM AA LK W ED  NF  +K+AFE+TT+FG
Sbjct:  347 GCLVASANRGCKAISQGGGARSAVIRDGITRAPCVRMRSAMEAAELKLWCEDPANFARLKSAFESTTSFG 416
[Close]
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: A0A1Z5KS57_FISSO (3-hydroxy-3-methylglutaryl coenzyme A reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KS57_FISSO)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-22
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVASTNRG KAI +GGG  A +++DGITRAPC+RMP AMAAA LK W E  +NF  +KAAFE+TT+FG
Sbjct:  275 GCLVASTNRGAKAITEGGGALAQIVRDGITRAPCIRMPTAMAAAQLKLWCETPENFVQMKAAFESTTSFG 344
[Close]
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: B8C0R4_THAPS (3-hydroxy-3-methylglutaryl coenzyme A reductase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0R4_THAPS)

HSP 1 Score: 97.8 bits (242), Expect = 1.280e-22
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVASTNRGCKAI QG G R+ +L+DGITRAPC+R+P A  AA +  W E+ DNF  +K AFE+TT+FG
Sbjct:   55 GCLVASTNRGCKAITQGSGARSTILRDGITRAPCVRLPSAHEAAQVHLWIEEADNFAKLKEAFESTTSFG 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: A0A7R9ZC66_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZC66_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 7.530e-22
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVAS NRGCKAI QG G  + +++DGITRAPC+RM  A  AA LK W ED DNF ++K AFE+TT+FG
Sbjct:  188 GCLVASANRGCKAISQGSGAVSTVVRDGITRAPCVRMRSAREAAELKLWCEDPDNFASLKKAFESTTSFG 257
[Close]
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: A0A7S4ALR6_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALR6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.480e-21
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVAS+NRG KAI QGGG +A +++DGITRAPCLRM  AM AA LK W E   NF  +K AFE+TT+FG
Sbjct:  320 GCLVASSNRGAKAITQGGGAKARIVRDGITRAPCLRMDSAMEAADLKIWCEQPSNFAVLKKAFESTTSFG 389
[Close]
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: B7GE13_PHATC (3-hydroxy-3-methylglutaryl coenzyme A reductase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GE13_PHATC)

HSP 1 Score: 94.0 bits (232), Expect = 3.450e-21
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVASTNRG KAI  GGG  A LL+DGITRAPC+RMP A  AA LK W E   +F  +K AFE+TT+FG
Sbjct:   54 GCLVASTNRGAKAITAGGGATAVLLRDGITRAPCVRMPSAAQAAHLKLWCETPQHFSTLKRAFESTTSFG 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: A0A7S2I1A6_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I1A6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.210e-21
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVASTNRGCKAI QG G  + +L+DGITRAPC+RM  A  AA LK W E  +NF  +K AFE+TT+FG
Sbjct:  207 GCLVASTNRGCKAITQGSGATSVILRDGITRAPCVRMSSAKQAADLKLWCEQPNNFATLKQAFESTTSFG 276
[Close]
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Match: A0A7S1YA95_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YA95_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.620e-20
Identity = 47/70 (67.14%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWFEDKDNFDAIKAAFETTTNFG 210
            GCLVAST RG KAI QGGG  A +LKDGITRAPC+RM  A  AA LK W E   NF  +KAAFE+TT+FG
Sbjct:  341 GCLVASTQRGAKAITQGGGATAVVLKDGITRAPCVRMASAADAAKLKLWCEVPQNFQQLKAAFESTTSFG 410
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7546.17803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YX65_9STRA1.870e-2571.433-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S1Y0Q7_9STRA1.350e-2370.003-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S2EB74_TRICV1.700e-2368.573-hydroxy-3-methylglutaryl coenzyme A reductase (F... [more]
A0A1Z5KS57_FISSO1.080e-2268.573-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
B8C0R4_THAPS1.280e-2264.293-hydroxy-3-methylglutaryl coenzyme A reductase (F... [more]
A0A7R9ZC66_9STRA7.530e-2264.29Hydroxymethylglutaryl-CoA reductase (NADPH) (Fragm... [more]
A0A7S4ALR6_9STRA2.480e-2165.713-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
B7GE13_PHATC3.450e-2165.713-hydroxy-3-methylglutaryl coenzyme A reductase (F... [more]
A0A7S2I1A6_9STRA4.210e-2164.293-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S1YA95_9STRA1.620e-2067.143-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7546contigM-pyrifera_M_contig7546:12145..12357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog35128.Thaps33680
Preferred nameHMG1
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0003674,GO:0003824,GO:0004420,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006066,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006644,GO:0006694,GO:0006696,GO:0006720,GO:0006721,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009987,GO:0010142,GO:0012505,GO:0016020,GO:0016021,GO:0016114,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016614,GO:0016616,GO:0019287,GO:0019637,GO:0019693,GO:0031090,GO:0031224,GO:0031903,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032991,GO:0033865,GO:0033875,GO:0034032,GO:0034399,GO:0034641,GO:0035383,GO:0042175,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0046165,GO:0046483,GO:0046490,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072521,GO:0090407,GO:0097384,GO:0098588,GO:0098805,GO:0098827,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1902652,GO:1902653,GO:1902767,GO:1905368,GO:1905369
EggNOG free text desc.Hydroxymethylglutaryl-coenzyme A reductase
EggNOG OGs2XANU@2836,COG1257@1,KOG2480@2759
EC1.1.1.34
COG Functional cat.I
BiGG ReactioniMM904.YML075C,iND750.YML075C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816652.5214424-CDS-M-pyrifera_M_contig7546:12144..123571622816652.5214424-CDS-M-pyrifera_M_contig7546:12144..12357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7546 12145..12357 +
1692278099.9895012-CDS-M-pyrifera_M_contig7546:12144..123571692278099.9895012-CDS-M-pyrifera_M_contig7546:12144..12357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7546 12145..12357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7546.17803.1prot_M-pyrifera_M_contig7546.17803.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7546 12145..12357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7546.17803.1

>prot_M-pyrifera_M_contig7546.17803.1 ID=prot_M-pyrifera_M_contig7546.17803.1|Name=mRNA_M-pyrifera_M_contig7546.17803.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
GCLVASTNRGCKAIGQGGGCRAALLKDGITRAPCLRMPDAMAAAGLKRWF
EDKDNFDAIKAAFETTTNFGE
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mRNA from alignment at M-pyrifera_M_contig7546:12145..12357+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7546.17803.1 ID=mRNA_M-pyrifera_M_contig7546.17803.1|Name=mRNA_M-pyrifera_M_contig7546.17803.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig7546:12145..12357+ (Macrocystis pyrifera P11B4 male)
GGCTGCCTCGTGGCGAGCACCAACAGGGGGTGCAAGGCTATCGGGCAGGG
AGGGGGCTGCCGGGCGGCGTTGCTGAAGGATGGCATCACGCGCGCTCCTT
GTCTGCGCATGCCGGACGCGATGGCGGCGGCGGGCCTTAAGCGATGGTTC
GAGGATAAGGACAACTTTGACGCCATCAAGGCCGCCTTCGAGACCACCAC
GAACTTCGGTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7546:12145..12357+

>mRNA_M-pyrifera_M_contig7546.17803.1 ID=mRNA_M-pyrifera_M_contig7546.17803.1|Name=mRNA_M-pyrifera_M_contig7546.17803.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig7546:12145..12357+ (Macrocystis pyrifera P11B4 male)
GGCTGCCTCGTGGCGAGCACCAACAGGGGGTGCAAGGCTATCGGGCAGGG
AGGGGGCTGCCGGGCGGCGTTGCTGAAGGATGGCATCACGCGCGCTCCTT
GTCTGCGCATGCCGGACGCGATGGCGGCGGCGGGCCTTAAGCGATGGTTC
GAGGATAAGGACAACTTTGACGCCATCAAGGCCGCCTTCGAGACCACCAC
GAACTTCGGTGAGGGCTGCCTCGTGGCGAGCACCAACAGGGGGTGCAAGG
CTATCGGGCAGGGAGGGGGCTGCCGGGCGGCGTTGCTGAAGGATGGCATC
ACGCGCGCTCCTTGTCTGCGCATGCCGGACGCGATGGCGGCGGCGGGCCT
TAAGCGATGGTTCGAGGATAAGGACAACTTTGACGCCATCAAGGCCGCCT
TCGAGACCACCACGAACTTCGGTGAG
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