mRNA_M-pyrifera_M_contig75415.17796.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75415.17796.1
Unique NamemRNA_M-pyrifera_M_contig75415.17796.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: A0A2T4WZE3_9BACT (50S ribosomal protein L21 n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A2T4WZE3_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 7.970e-9
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 HTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSI 111
            H +G KV+VFKKKRRKGYRKK G RQH T + IDSI
Sbjct:   66 HQKGDKVIVFKKKRRKGYRKKNGHRQHFTKIKIDSI 101
[Close]
BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: A0A7C9B9F8_9BACT (50S ribosomal protein L21 n=1 Tax=Cytophagaceae bacterium SJW1-29 TaxID=2654236 RepID=A0A7C9B9F8_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 7.970e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 EHTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSI 111
            EH +G+KV+VFKKKRRKGYRKK G RQ+LT + ID I
Sbjct:   65 EHLKGEKVIVFKKKRRKGYRKKNGHRQYLTKIRIDDI 101
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BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: A0A6B2LZU9_9BACT (50S ribosomal protein L21 n=1 Tax=Oceanipulchritudo coccoides TaxID=2706888 RepID=A0A6B2LZU9_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 8.150e-9
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 EHTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSITS 117
            E+ RG+KVLVFKKKRRKGYR K+G RQ L+V+ I+SIT+
Sbjct:   66 ENKRGKKVLVFKKKRRKGYRNKRGHRQELSVIKIESITA 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: A0A1M4URI7_9FLAO (50S ribosomal protein L21 n=3 Tax=Psychroflexus TaxID=83612 RepID=A0A1M4URI7_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 8.160e-9
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 EHTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSITSAFDQHEWPLPKEFPSKE 168
            +H +G KV+VFKKKRRKGY+KK G RQ+LT + I+ +T++  +      KE PSKE
Sbjct:   76 KHLKGDKVIVFKKKRRKGYKKKNGHRQYLTEILIEGLTASGAKKSSASKKEEPSKE 131
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BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: I0K2H1_9BACT (50S ribosomal protein L21 n=5 Tax=Cytophagales TaxID=768507 RepID=I0K2H1_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 8.340e-9
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 EHTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSIT 114
            EH +G+KV+VFKKKRRKGY+KK G RQ+LT L I+ IT
Sbjct:   67 EHLKGEKVIVFKKKRRKGYKKKNGHRQYLTKLQINDIT 104
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BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: UPI001BB80515 (50S ribosomal protein L21 n=1 Tax=Cryomorphaceae bacterium TaxID=1898111 RepID=UPI001BB80515)

HSP 1 Score: 56.6 bits (135), Expect = 1.020e-8
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 EHTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSITS 117
            EH +G KV+VFKKKRRKGYRKK G RQ+LT L I  IT+
Sbjct:   65 EHLKGDKVIVFKKKRRKGYRKKNGHRQYLTSLEISGITA 103
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BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: A0A5C6RNU3_9BACT (50S ribosomal protein L21 n=1 Tax=Phaeodactylibacter luteus TaxID=1564516 RepID=A0A5C6RNU3_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.100e-8
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 HTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSI 111
            H +G KVLVF+KKRRKGYRKK G RQH T + IDSI
Sbjct:   65 HQKGDKVLVFRKKRRKGYRKKNGHRQHFTKIKIDSI 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: A0A7Y3H307_9BACT (50S ribosomal protein L21 n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y3H307_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.130e-8
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 EHTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSI 111
            EH +G KV+VFKKKRRKGYR K G RQH T + IDSI
Sbjct:   65 EHVKGDKVIVFKKKRRKGYRVKNGHRQHFTKIKIDSI 101
[Close]
BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: A0A2D0MX55_9BACT (50S ribosomal protein L21 n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0MX55_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.130e-8
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 EHTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSI 111
            EH +G KV+VFKKKRRKGYR K G RQH T + IDSI
Sbjct:   65 EHVKGDKVIVFKKKRRKGYRVKNGHRQHFTKIKIDSI 101
[Close]
BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Match: C6W6M4_DYAFD (50S ribosomal protein L21 n=29 Tax=Dyadobacter TaxID=120831 RepID=C6W6M4_DYAFD)

HSP 1 Score: 55.8 bits (133), Expect = 1.130e-8
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 EHTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSITS 117
            EH +G+KV+VFKKKRRKGYR K G RQ+LT +SID I +
Sbjct:   65 EHLKGEKVIVFKKKRRKGYRVKNGHRQYLTKISIDEIVA 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75415.17796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2T4WZE3_9BACT7.970e-972.2250S ribosomal protein L21 n=2 Tax=Bacteroidetes Ta... [more]
A0A7C9B9F8_9BACT7.970e-970.2750S ribosomal protein L21 n=1 Tax=Cytophagaceae ba... [more]
A0A6B2LZU9_9BACT8.150e-969.2350S ribosomal protein L21 n=1 Tax=Oceanipulchritud... [more]
A0A1M4URI7_9FLAO8.160e-951.7950S ribosomal protein L21 n=3 Tax=Psychroflexus Ta... [more]
I0K2H1_9BACT8.340e-968.4250S ribosomal protein L21 n=5 Tax=Cytophagales Tax... [more]
UPI001BB805151.020e-869.2350S ribosomal protein L21 n=1 Tax=Cryomorphaceae b... [more]
A0A5C6RNU3_9BACT1.100e-872.2250S ribosomal protein L21 n=1 Tax=Phaeodactylibact... [more]
A0A7Y3H307_9BACT1.130e-870.2750S ribosomal protein L21 n=1 Tax=Saprospiraceae b... [more]
A0A2D0MX55_9BACT1.130e-870.2750S ribosomal protein L21 n=1 Tax=Flavilitoribacte... [more]
C6W6M4_DYAFD1.130e-866.6750S ribosomal protein L21 n=29 Tax=Dyadobacter Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75415contigM-pyrifera_M_contig75415:2..172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816652.140763-CDS-M-pyrifera_M_contig75415:1..1721622816652.140763-CDS-M-pyrifera_M_contig75415:1..172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75415 2..172 +
1692278099.785706-CDS-M-pyrifera_M_contig75415:1..1721692278099.785706-CDS-M-pyrifera_M_contig75415:1..172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75415 2..172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75415.17796.1prot_M-pyrifera_M_contig75415.17796.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75415 2..172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75415.17796.1

>prot_M-pyrifera_M_contig75415.17796.1 ID=prot_M-pyrifera_M_contig75415.17796.1|Name=mRNA_M-pyrifera_M_contig75415.17796.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
EHTRGQKVLVFKKKRRKGYRKKQGFRQHLTVLSIDSITSAFDQHEWPLPK
EFPSKED
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mRNA from alignment at M-pyrifera_M_contig75415:2..172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75415.17796.1 ID=mRNA_M-pyrifera_M_contig75415.17796.1|Name=mRNA_M-pyrifera_M_contig75415.17796.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig75415:2..172+ (Macrocystis pyrifera P11B4 male)
GAGCACACGCGAGGGCAGAAAGTGCTCGTGTTCAAGAAGAAGCGCCGCAA
AGGATACCGCAAGAAGCAAGGGTTTCGCCAACACCTCACGGTGCTCTCCA
TTGACTCCATCACCTCGGCCTTTGACCAGCACGAGTGGCCGCTGCCCAAG
GAATTCCCCTCCAAGGAAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75415:2..172+

>mRNA_M-pyrifera_M_contig75415.17796.1 ID=mRNA_M-pyrifera_M_contig75415.17796.1|Name=mRNA_M-pyrifera_M_contig75415.17796.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig75415:2..172+ (Macrocystis pyrifera P11B4 male)
GAGCACACGCGAGGGCAGAAAGTGCTCGTGTTCAAGAAGAAGCGCCGCAA
AGGATACCGCAAGAAGCAAGGGTTTCGCCAACACCTCACGGTGCTCTCCA
TTGACTCCATCACCTCGGCCTTTGACCAGCACGAGTGGCCGCTGCCCAAG
GAATTCCCCTCCAAGGAAGACGAGCACACGCGAGGGCAGAAAGTGCTCGT
GTTCAAGAAGAAGCGCCGCAAAGGATACCGCAAGAAGCAAGGGTTTCGCC
AACACCTCACGGTGCTCTCCATTGACTCCATCACCTCGGCCTTTGACCAG
CACGAGTGGCCGCTGCCCAAGGAATTCCCCTCCAAGGAAGAC
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