mRNA_M-pyrifera_M_contig75334.17783.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75334.17783.1
Unique NamemRNA_M-pyrifera_M_contig75334.17783.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A7S1C968_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C968_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.100e-23
Identity = 54/131 (41.22%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   40 LWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLPRVVMEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY 432
            LW Q SL   N+ LA+PL +AE  F + T + R  A L   V  FTP   GS+   + F V N ++L +  +   PTD ++ LEPWAE  + +  +I  Q L+ + I  + P EA LAPG+ +TV MHYAY
Sbjct:  152 LWRQFSLHHLNKSLALPLRAAEIKFNKATQMTRKPAELDTFVFNFTPGTLGSSKMTVAFSVRNTSNLRSDMSFVFPTDQEVELEPWAEIGEPTVDDINRQELVNQGIFDVQPREASLAPGERVTVVMHYAY 282          
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A8J2S9Y5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9Y5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.850e-19
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   31 SDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLPRVVMEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKR-RIIGIHPTEARLAPGQTITVRMHY 426
            + ++W   SL   N+ L  PLTS E  F +++    +  LLPR   +F P P G+ P+V+L ++ NP  LPA F++ LP + DI LEPWA+E + S + + V  +I   +   I P +A L PG + T+R+ Y
Sbjct: 1133 TSAMWAHFSLSALNKTLLTPLTSKEVKFNQESS--PDLQLLPRYPCKFVPEPLGNPPQVVLIQIENPGLLPASFSVHLPNERDIELEPWADEGEPSPEVVMVNKIIDELKCFDISPRQASLEPGGSCTLRIAY 1263          
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A3Q7SMX4_VULVU (LOW QUALITY PROTEIN: cilia- and flagella-associated protein 65 n=5 Tax=Canidae TaxID=9608 RepID=A0A3Q7SMX4_VULVU)

HSP 1 Score: 66.2 bits (160), Expect = 7.260e-10
Identity = 43/149 (28.86%), Postives = 66/149 (44.30%), Query Frame = 1
Query:    4 SFGPIDAPRSDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLPRVV------MEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY 432
            S G I+      LW   SL R N +L    T  E T+  + P   + + +P+V         F   P  ++P V+L  + N   +P  +    P+D  I LE WAE+A+  R E+    +    I  I P    L+PGQ   V + Y++
Sbjct: 1050 SMGSIEGITRKHLWHLFSLDRLNSYLERDPTPQELTY--RVPTRHSTSQIPQVFTPLKLDFNFGAAPIEASPSVVLLALKNSGVVPLDWAFLFPSDQQIDLELWAEQAEFDRTELHQMRVQDNCIFSISPKAGSLSPGQEQVVELKYSH 1196          
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A2K6G4Q1_PROCO (Cilia and flagella associated protein 65 n=2 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6G4Q1_PROCO)

HSP 1 Score: 64.3 bits (155), Expect = 3.400e-9
Identity = 44/150 (29.33%), Postives = 65/150 (43.33%), Query Frame = 1
Query:    1 SSFGPIDAPRSDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLPRVV------MEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY 432
            SS G  +      LW   SL   N +L    TS E T+  K P   + + +P V         F   P  + P V+L  + N   +P  +    P+D  I LE WAE+A+ +R E+    +    +  I P    L+PGQ  TV   Y++
Sbjct: 1104 SSMGSTEGITRKHLWRLFSLDLLNSYLERDPTSWELTY--KVPTRHSTSQIPPVFTPLKLDFNFGAAPFDAPPSVVLLVLKNSGVVPLDWAFLFPSDQQIDLELWAEQAEFNRTELHQMRVQDNCVFSISPKAGSLSPGQEQTVEFKYSH 1251          
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A8B7V525_CASCN (LOW QUALITY PROTEIN: cilia- and flagella-associated protein 65 n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A8B7V525_CASCN)

HSP 1 Score: 61.6 bits (148), Expect = 2.970e-8
Identity = 42/149 (28.19%), Postives = 63/149 (42.28%), Query Frame = 1
Query:    4 SFGPIDAPRSDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLP------RVVMEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY 432
            S G         LW   SL   N +LA   T  E T+  K P   + + +P      R+   F   P  + P V+L  + N   +P  +    P+D  I LE WAE+A+ +R E+        ++  I P    L+PGQ   V   Y++
Sbjct: 1118 SMGSAKGITRKHLWRLFSLDMLNSYLARDPTPWELTY--KVPTRHSTSQMPPVFTPLRLDFNFGAAPLKAQPSVVLLVLKNSGMVPLDWAFLFPSDQQIDLELWAEQAEFNRTELHQMRAEDNKLFSISPKAGSLSPGQEQIVEFKYSH 1264          
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A8C5L8Q8_JACJA (Cilia and flagella associated protein 65 n=2 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5L8Q8_JACJA)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-7
Identity = 42/149 (28.19%), Postives = 63/149 (42.28%), Query Frame = 1
Query:    4 SFGPIDAPRSDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLPRVV------MEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY 432
            S G  +      LW   SL   N +LA   T  E T+  K P   + + +P V         F   P  + P V+L  + N   +P  +    P+D  I LE WA++A+L+  E+         +  I P    L+PGQ  TV   Y++
Sbjct:  989 SMGSAEGITRKHLWHLFSLDMLNSYLAHNPTPLELTY--KVPTRHSMSQIPTVFTPLKLDFNFGAAPFKAPPSVVLLAMKNSGLVPLDWAFLFPSDQQIDLEIWADQAELNLTELHQMRAEDNCLFSISPKSGSLSPGQEQTVEFKYSH 1135          
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A673TA59_SURSU (Cilia and flagella associated protein 65 n=2 Tax=Suricata suricatta TaxID=37032 RepID=A0A673TA59_SURSU)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-7
Identity = 42/149 (28.19%), Postives = 61/149 (40.94%), Query Frame = 1
Query:    4 SFGPIDAPRSDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLPRVV------MEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY 432
            S G         LW   SL R N +L    T  E T+  K P   + + +P +         F   P  + P V+L  + N   +   +    P+D  I LE WAE+A+L R E+    +    I  I+P    L PGQ   V   Y++
Sbjct: 1024 SMGSAQGITRKHLWRLFSLDRLNSYLERDPTPGELTY--KVPTRHSTSQIPTIFTPLKLDFNFGAAPIEARPSVVLLALKNTGVVHLDWAFLFPSDQQIDLELWAEQAELDRTELHQMRVQDNCIFSINPKAGSLGPGQEQLVEFTYSH 1170          
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A6P4W3Q8_PANPR (cilia- and flagella-associated protein 65 isoform X2 n=4 Tax=Felidae TaxID=9681 RepID=A0A6P4W3Q8_PANPR)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-7
Identity = 42/149 (28.19%), Postives = 61/149 (40.94%), Query Frame = 1
Query:    4 SFGPIDAPRSDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLPRVV------MEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY 432
            S G  +      LW   SL R N +L    T  E T+  K P   + + +P V         F   P  + P V+L  + N  ++P  +    P+D  I LE WAE+A+    E+    +    I  I P    L PGQ   V   Y++
Sbjct: 1050 SMGSAEGITQKHLWRLFSLDRLNSYLERDPTPEELTY--KVPTRHSTSQIPTVFTPLKLDFNFGAAPIEARPSVVLLALKNIGAVPLDWAFLFPSDQQIDLELWAEQAEFDCTELHQMRVQDNCIFSISPKAGSLGPGQEQMVEFKYSH 1196          
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A7J8FQA1_MOLMO (Cilia and flagella associated protein 65 n=3 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8FQA1_MOLMO)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-7
Identity = 41/149 (27.52%), Postives = 61/149 (40.94%), Query Frame = 1
Query:    4 SFGPIDAPRSDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLPRVV------MEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY 432
            S G         LW   SL   N +L    T  E T+  K P   + + +P +         F   P  + P V+L  + N   +P  +    P+D  I LEPWA+EA+    E+    +    I  I P    L+PGQ   V + Y++
Sbjct: 1029 SMGSAQGITRRHLWHLFSLDMLNSYLERDPTPQELTY--KVPTRHSTSQIPPIFTPLKLDFNFGAAPIEAPPSVVLLALKNSGVVPLDWAFLFPSDQQIDLEPWADEAEFDCIELHQMRVQDNCIFSISPRTGSLSPGQEQVVELQYSH 1175          
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Match: A0A6P6ICF5_PUMCO (LOW QUALITY PROTEIN: cilia- and flagella-associated protein 65 n=20 Tax=Feliformia TaxID=379583 RepID=A0A6P6ICF5_PUMCO)

HSP 1 Score: 59.7 bits (143), Expect = 1.380e-7
Identity = 42/149 (28.19%), Postives = 61/149 (40.94%), Query Frame = 1
Query:    4 SFGPIDAPRSDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAALLPRVV------MEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWAEEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY 432
            S G  +      LW   SL R N +L    T  E T+  K P   + + +P V         F   P  + P V+L  + N  ++P  +    P+D  I LE WAE+A+    E+    +    I  I P    L PGQ   V   Y++
Sbjct: 1038 SMGSAEGITRKHLWRLFSLDRLNSYLERDPTPEELTY--KVPTRHSTSQIPTVFTPLKLDFNFGAAPIEARPSVVLLALKNIGAVPLDWAFLFPSDQQIDLELWAEQAEFDCTELHQMRVQDNCIFSISPKAGSLGPGQEQMVEFKYSH 1184          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75334.17783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C968_9STRA4.100e-2341.22Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J2S9Y5_9STRA2.850e-1937.59Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3Q7SMX4_VULVU7.260e-1028.86LOW QUALITY PROTEIN: cilia- and flagella-associate... [more]
A0A2K6G4Q1_PROCO3.400e-929.33Cilia and flagella associated protein 65 n=2 Tax=P... [more]
A0A8B7V525_CASCN2.970e-828.19LOW QUALITY PROTEIN: cilia- and flagella-associate... [more]
A0A8C5L8Q8_JACJA1.010e-728.19Cilia and flagella associated protein 65 n=2 Tax=J... [more]
A0A673TA59_SURSU1.010e-728.19Cilia and flagella associated protein 65 n=2 Tax=S... [more]
A0A6P4W3Q8_PANPR1.010e-728.19cilia- and flagella-associated protein 65 isoform ... [more]
A0A7J8FQA1_MOLMO1.010e-727.52Cilia and flagella associated protein 65 n=3 Tax=M... [more]
A0A6P6ICF5_PUMCO1.380e-728.19LOW QUALITY PROTEIN: cilia- and flagella-associate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75334contigM-pyrifera_M_contig75334:538..969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue6.7e-11
Seed eggNOG ortholog42099.EPrPV00000018227
KEGG koko:K12472
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endocytosis
EggNOG OGsKOG0998@1,KOG0998@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.481995-CDS-M-pyrifera_M_contig75334:537..9691622816651.481995-CDS-M-pyrifera_M_contig75334:537..969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75334 538..969 +
1692278099.417335-CDS-M-pyrifera_M_contig75334:537..9691692278099.417335-CDS-M-pyrifera_M_contig75334:537..969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75334 538..969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75334.17783.1prot_M-pyrifera_M_contig75334.17783.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75334 538..969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75334.17783.1

>prot_M-pyrifera_M_contig75334.17783.1 ID=prot_M-pyrifera_M_contig75334.17783.1|Name=mRNA_M-pyrifera_M_contig75334.17783.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
SSFGPIDAPRSDSLWEQLSLRRANRHLAMPLTSAEKTFLRKTPLFRNAAL
LPRVVMEFTPRPAGSAPEVLLFEVTNPTSLPARFTIALPTDADIPLEPWA
EEAKLSRKEIAVQSLIKRRIIGIHPTEARLAPGQTITVRMHYAY
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mRNA from alignment at M-pyrifera_M_contig75334:538..969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75334.17783.1 ID=mRNA_M-pyrifera_M_contig75334.17783.1|Name=mRNA_M-pyrifera_M_contig75334.17783.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig75334:538..969+ (Macrocystis pyrifera P11B4 male)
AGCTCATTCGGTCCCATTGATGCTCCTAGAAGTGATTCCTTGTGGGAACA ATTGAGTCTTCGTCGTGCGAACCGACACTTGGCTATGCCATTAACAAGTG CGGAGAAAACTTTTTTGAGAAAAACTCCATTGTTTCGCAATGCTGCCTTG CTGCCTCGAGTAGTCATGGAATTTACTCCTCGTCCAGCAGGATCAGCTCC AGAAGTGCTGTTGTTTGAAGTGACCAATCCAACTTCTCTCCCAGCGCGTT TCACCATTGCACTTCCAACAGATGCTGATATCCCATTGGAACCATGGGCG GAAGAAGCAAAGTTGTCACGAAAAGAAATTGCTGTCCAATCTCTCATCAA GCGTCGCATCATTGGAATTCACCCAACAGAAGCACGTCTTGCACCTGGAC AAACCATCACTGTCCGAATGCACTATGCTTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75334:538..969+

>mRNA_M-pyrifera_M_contig75334.17783.1 ID=mRNA_M-pyrifera_M_contig75334.17783.1|Name=mRNA_M-pyrifera_M_contig75334.17783.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig75334:538..969+ (Macrocystis pyrifera P11B4 male)
AGCTCATTCGGTCCCATTGATGCTCCTAGAAGTGATTCCTTGTGGGAACA
ATTGAGTCTTCGTCGTGCGAACCGACACTTGGCTATGCCATTAACAAGTG
CGGAGAAAACTTTTTTGAGAAAAACTCCATTGTTTCGCAATGCTGCCTTG
CTGCCTCGAGTAGTCATGGAATTTACTCCTCGTCCAGCAGGATCAGCTCC
AGAAGTGCTGTTGTTTGAAGTGACCAATCCAACTTCTCTCCCAGCGCGTT
TCACCATTGCACTTCCAACAGATGCTGATATCCCATTGGAACCATGGGCG
GAAGAAGCAAAGTTGTCACGAAAAGAAATTGCTGTCCAATCTCTCATCAA
GCGTCGCATCATTGGAATTCACCCAACAGAAGCACGTCTTGCACCTGGAC
AAACCATCACTGTCCGAATGCACTATGCTTATAGCTCATTCGGTCCCATT
GATGCTCCTAGAAGTGATTCCTTGTGGGAACAATTGAGTCTTCGTCGTGC
GAACCGACACTTGGCTATGCCATTAACAAGTGCGGAGAAAACTTTTTTGA
GAAAAACTCCATTGTTTCGCAATGCTGCCTTGCTGCCTCGAGTAGTCATG
GAATTTACTCCTCGTCCAGCAGGATCAGCTCCAGAAGTGCTGTTGTTTGA
AGTGACCAATCCAACTTCTCTCCCAGCGCGTTTCACCATTGCACTTCCAA
CAGATGCTGATATCCCATTGGAACCATGGGCGGAAGAAGCAAAGTTGTCA
CGAAAAGAAATTGCTGTCCAATCTCTCATCAAGCGTCGCATCATTGGAAT
TCACCCAACAGAAGCACGTCTTGCACCTGGACAAACCATCACTGTCCGAA
TGCACTATGCTTAT
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