mRNA_M-pyrifera_M_contig75332.17781.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75332.17781.1
Unique NamemRNA_M-pyrifera_M_contig75332.17781.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75332.17781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75332contigM-pyrifera_M_contig75332:772..1056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size261
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.39268-UTR-M-pyrifera_M_contig75332:771..7951622816651.39268-UTR-M-pyrifera_M_contig75332:771..795Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75332 772..795 +
1692278099.3734686-UTR-M-pyrifera_M_contig75332:771..7951692278099.3734686-UTR-M-pyrifera_M_contig75332:771..795Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75332 772..795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.410744-CDS-M-pyrifera_M_contig75332:795..10561622816651.410744-CDS-M-pyrifera_M_contig75332:795..1056Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75332 796..1056 +
1692278099.384267-CDS-M-pyrifera_M_contig75332:795..10561692278099.384267-CDS-M-pyrifera_M_contig75332:795..1056Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75332 796..1056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75332.17781.1prot_M-pyrifera_M_contig75332.17781.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75332 796..1056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75332.17781.1

>prot_M-pyrifera_M_contig75332.17781.1 ID=prot_M-pyrifera_M_contig75332.17781.1|Name=mRNA_M-pyrifera_M_contig75332.17781.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MLSPASLWEPSTVRRFLNRSKSLAALWSVLKSSHSLLHGKKSATLREAYY
MDAALFSKQEDTNRAVQQVCGMLHIPRHSLGFMASAR
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mRNA from alignment at M-pyrifera_M_contig75332:772..1056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75332.17781.1 ID=mRNA_M-pyrifera_M_contig75332.17781.1|Name=mRNA_M-pyrifera_M_contig75332.17781.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig75332:772..1056+ (Macrocystis pyrifera P11B4 male)
AAAGGTTCTGTGCATTTGGCTCACATGCTCTCTCCAGCGTCCTTGTGGGA
GCCAAGTACTGTTCGTCGCTTCTTGAATCGCTCAAAGTCTTTGGCTGCAT
TGTGGAGTGTATTAAAGTCCTCACATTCCCTCTTACATGGCAAAAAATCT
GCAACTCTTCGTGAAGCGTATTATATGGATGCTGCTTTGTTCTCCAAGCA
AGAAGACACCAACCGTGCAGTACAGCAAGTTTGTGGAATGTTACACATCC
CTCGTCACTCCCTAGGTTTCATGGCATCAGCACGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75332:772..1056+

>mRNA_M-pyrifera_M_contig75332.17781.1 ID=mRNA_M-pyrifera_M_contig75332.17781.1|Name=mRNA_M-pyrifera_M_contig75332.17781.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig75332:772..1056+ (Macrocystis pyrifera P11B4 male)
ATGCTCTCTCCAGCGTCCTTGTGGGAGCCAAGTACTGTTCGTCGCTTCTT
GAATCGCTCAAAGTCTTTGGCTGCATTGTGGAGTGTATTAAAGTCCTCAC
ATTCCCTCTTACATGGCAAAAAATCTGCAACTCTTCGTGAAGCGTATTAT
ATGGATGCTGCTTTGTTCTCCAAGCAAGAAGACACCAACCGTGCAGTACA
GCAAGTTTGTGGAATGTTACACATCCCTCGTCACTCCCTAGGTTTCATGG
CATCAGCACGTATGCTCTCTCCAGCGTCCTTGTGGGAGCCAAGTACTGTT
CGTCGCTTCTTGAATCGCTCAAAGTCTTTGGCTGCATTGTGGAGTGTATT
AAAGTCCTCACATTCCCTCTTACATGGCAAAAAATCTGCAACTCTTCGTG
AAGCGTATTATATGGATGCTGCTTTGTTCTCCAAGCAAGAAGACACCAAC
CGTGCAGTACAGCAAGTTTGTGGAATGTTACACATCCCTCGTCACTCCCT
AGGTTTCATGGCATCAGCACGT
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