mRNA_M-pyrifera_M_contig75243.17765.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75243.17765.1
Unique NamemRNA_M-pyrifera_M_contig75243.17765.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig75243.17765.1 vs. uniprot
Match: A0A383W3N8_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3N8_TETOB)

HSP 1 Score: 87.4 bits (215), Expect = 3.930e-16
Identity = 73/256 (28.52%), Postives = 116/256 (45.31%), Query Frame = 1 
Query:   22 SVVLMSFDRPDQVRQIVKHFLEEEAFHSYVREILIWDAKGGENRFGDLERESTSREDLPRVTLVRIHPDPGLHGRFAAALLAREPLVLIQDDDLIVGPRALRELVY-RHSLEPHLLHGMHPRVPNK-RIPYLKAEYRGLQVGPIILTKVLLARREHFASFWQYEPFLAPIAKQARPPWNGEDILFSLSVCRRNGGQLNRAYPQLLKDVTELPSKFAVSR-------GWKK-----HLNFRKEFTKCAFRVLGLDPP 747
            SVV+M++ RP+  ++I + +  + A+  YV E+++   K   + F +L         +        +   GL  RF   LLA E  VLIQDDD +V P  +++L+  R +  P  L G   R  N+ + P    +     + PI+LT  +   +   A+F++Y P +  +   A+P WNGEDI  SL   +     L    P+++      P+  AV         G  K     H   RK F + A R LG+  P
Sbjct:  164 SVVIMNWSRPENTKKIAETYTTDPAYEPYVAEVVVLHLKP--DAFFELNNPK-----VKHYVDYTANDKYGLAVRFIGCLLASEGEVLIQDDDALVRPHGMKDLLAARAAGAPGQLVGFRGRTWNRLQEPQYHPKEPLPGLHPIVLTIAMATPKAMCAAFFKYAPAVEDLVADAKPYWNGEDIFLSLVSYK-----LTCVMPRIMPGGWPEPTASAVQYLQDDKEVGMHKVFAQQHFQHRKRFVRAASRRLGIYQP 407
[Close]
BLAST of mRNA_M-pyrifera_M_contig75243.17765.1 vs. uniprot
Match: A0A7J7PPN1_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PPN1_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 4.210e-16
Identity = 70/251 (27.89%), Postives = 117/251 (46.61%), Query Frame = 1 
Query:   34 MSFDRPDQVRQIVKHFLEEEAFHSYVREILIWDAKGGENRFGDLERESTSREDLPRVTLVRIHPDPGLHGRFAAALLAREPLVLIQDDDLIVGPRALRELVY-RHSLEPHLLHGMHPRVPNK-RIPYLKAEYRGLQVGPIILTKVLLARREHFASFWQYEPFLAPIAKQARPPWNGEDILFSLSVCRRNGGQLNRAYP-----------QLLKDVTELPSKFAVSRGWKKHLNFRKEFTKCAFRVLGLDPP 747
            M++ RP+  ++I + +  + A+  YV E+++   K   + F +L+        +        +   GL  RF   LLA E  VLIQDDD++V P+ +R+L+  R +  P  L G   R  N+ + P    +     + PI+LT  +   +   A+F++Y P +  +    +P WNGEDI  SL V  +    + R  P           Q L+D +E+      ++   +H   RK F + A R LG+  P
Sbjct:    1 MNWSRPENTKKIAETYTTDPAYEPYVAEVVLLHLKP--DAFFELDHAK-----VKHYVDYTANEKYGLAVRFIGCLLATETEVLIQDDDVVVWPQGMRDLLAARAAGAPGQLVGFRGRTWNRLQEPQYSPKEPLPGLHPIVLTIAMATPKSMCAAFFKYAPAVEDLVADDKPYWNGEDIFLSL-VAYKLSCVMPRIMPGGWPESTATAVQYLQDESEVGMHKVFAQ---QHFRHRKRFVRIASRRLGIYQP 240
[Close]
BLAST of mRNA_M-pyrifera_M_contig75243.17765.1 vs. uniprot
Match: A0A7R9V959_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V959_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 1.790e-15
Identity = 78/251 (31.08%), Postives = 120/251 (47.81%), Query Frame = 1 
Query:   19 VSVVLMSFDRPDQVRQIVKHFLEEEAFHSYVREILIWDAKGGENRFGDLERESTSREDLPRVTLV---RIHPDPGLHGRFAAALLAREPLVLIQDDDLIVGPRALRELVYRHSLEPHLLHGMHPRVPNKRIPYLKAEY--RGLQVGP--IILTKVLLARREHFASFWQYEPFLAP-IAKQARPPWNGEDILFSLSVCRRNGGQLNRAYPQLLKDVTELPSKFAVS---RGWKKHLNFRKEFTKCAFRVLGL 738
            VSVV++++ RP  VR+I++ ++E +A    V EI++W     + RF             PRV +V     + + GL  RF A LLA+   VL+QDDD  + P+ L   +   +  P  L G   R  + R  +  A Y  R +  GP  I+LT + L       +FW   P +   I +++RP WNGEDI FSL       G+L    P +++       +  V    R  ++H  +R EF + A   LG+
Sbjct:    9 VSVVMLNWRRPGNVRRILRKYVEYDA----VEEIIVWMCHP-DTRFNFSH---------PRVRIVDKPSANSEFGLATRFRACLLAKSEWVLVQDDDHYLQPQGLAAFMAAKASSPARLVGAFGR--DWRGGWRDAAYVRRRVPPGPARIVLTVLALTDVAACQAFWDAAPAVQEFITQRSRPLWNGEDIFFSLVA-----GRLAGEPPLVVRARKVFMKQGGVGIHQRDAREHDAYRDEFLRHAVAALGI 238
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75243.17765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A383W3N8_TETOB3.930e-1628.52Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7J7PPN1_9CHLO4.210e-1627.89Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A7R9V959_9CHLO1.790e-1531.08Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75243contigM-pyrifera_M_contig75243:5..757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size753
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.550191-CDS-M-pyrifera_M_contig75243:4..7571622816650.550191-CDS-M-pyrifera_M_contig75243:4..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75243 5..757 -
1692278098.9264965-CDS-M-pyrifera_M_contig75243:4..7571692278098.9264965-CDS-M-pyrifera_M_contig75243:4..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75243 5..757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75243.17765.1prot_M-pyrifera_M_contig75243.17765.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75243 5..757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75243.17765.1

>prot_M-pyrifera_M_contig75243.17765.1 ID=prot_M-pyrifera_M_contig75243.17765.1|Name=mRNA_M-pyrifera_M_contig75243.17765.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=251bp
LPPGLTVSVVLMSFDRPDQVRQIVKHFLEEEAFHSYVREILIWDAKGGEN
RFGDLERESTSREDLPRVTLVRIHPDPGLHGRFAAALLAREPLVLIQDDD
LIVGPRALRELVYRHSLEPHLLHGMHPRVPNKRIPYLKAEYRGLQVGPII
LTKVLLARREHFASFWQYEPFLAPIAKQARPPWNGEDILFSLSVCRRNGG
QLNRAYPQLLKDVTELPSKFAVSRGWKKHLNFRKEFTKCAFRVLGLDPPE
W
back to top

mRNA from alignment at M-pyrifera_M_contig75243:5..757-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75243.17765.1 ID=mRNA_M-pyrifera_M_contig75243.17765.1|Name=mRNA_M-pyrifera_M_contig75243.17765.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=753bp|location=Sequence derived from alignment at M-pyrifera_M_contig75243:5..757- (Macrocystis pyrifera P11B4 male)
CTTCCACCAGGGTTGACCGTTTCTGTTGTTTTAATGTCGTTTGATCGACC
TGATCAAGTAAGACAGATTGTGAAGCATTTCTTGGAGGAAGAAGCATTCC
ATTCTTATGTCCGAGAGATTTTGATTTGGGATGCCAAAGGTGGTGAAAAT
CGGTTCGGTGATCTAGAACGTGAATCGACGTCTCGAGAGGACCTTCCACG
TGTGACATTGGTGAGAATACATCCAGATCCAGGGTTACATGGTCGTTTTG
CTGCTGCACTTCTTGCACGTGAGCCTCTTGTGTTAATTCAAGATGATGAC
TTGATCGTAGGTCCAAGAGCTTTACGTGAATTAGTGTATCGACATTCCCT
TGAACCACATCTTCTCCATGGCATGCATCCTCGAGTACCAAACAAACGAA
TTCCGTATCTCAAAGCAGAATATCGTGGTCTTCAAGTTGGCCCTATTATC
CTCACAAAAGTACTCTTGGCAAGACGAGAGCACTTTGCATCGTTTTGGCA
GTATGAACCTTTTCTGGCTCCCATAGCAAAACAAGCGAGGCCGCCATGGA
ATGGCGAAGACATTCTATTTAGTTTATCTGTATGCCGACGAAATGGGGGA
CAACTCAATCGTGCTTATCCTCAACTCCTCAAAGATGTCACAGAGCTCCC
ATCCAAGTTTGCAGTGTCTCGTGGTTGGAAGAAACACCTCAACTTTCGCA
AGGAATTCACAAAGTGTGCCTTTCGGGTCCTTGGCCTTGATCCACCAGAA
TGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig75243:5..757-

>mRNA_M-pyrifera_M_contig75243.17765.1 ID=mRNA_M-pyrifera_M_contig75243.17765.1|Name=mRNA_M-pyrifera_M_contig75243.17765.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1506bp|location=Sequence derived from alignment at M-pyrifera_M_contig75243:5..757- (Macrocystis pyrifera P11B4 male)
CTTCCACCAGGGTTGACCGTTTCTGTTGTTTTAATGTCGTTTGATCGACC
TGATCAAGTAAGACAGATTGTGAAGCATTTCTTGGAGGAAGAAGCATTCC
ATTCTTATGTCCGAGAGATTTTGATTTGGGATGCCAAAGGTGGTGAAAAT
CGGTTCGGTGATCTAGAACGTGAATCGACGTCTCGAGAGGACCTTCCACG
TGTGACATTGGTGAGAATACATCCAGATCCAGGGTTACATGGTCGTTTTG
CTGCTGCACTTCTTGCACGTGAGCCTCTTGTGTTAATTCAAGATGATGAC
TTGATCGTAGGTCCAAGAGCTTTACGTGAATTAGTGTATCGACATTCCCT
TGAACCACATCTTCTCCATGGCATGCATCCTCGAGTACCAAACAAACGAA
TTCCGTATCTCAAAGCAGAATATCGTGGTCTTCAAGTTGGCCCTATTATC
CTCACAAAAGTACTCTTGGCAAGACGAGAGCACTTTGCATCGTTTTGGCA
GTATGAACCTTTTCTGGCTCCCATAGCAAAACAAGCGAGGCCGCCATGGA
ATGGCGAAGACATTCTATTTAGTTTATCTGTATGCCGACGAAATGGGGGA
CAACTCAATCGTGCTTATCCTCAACTCCTCAAAGATGTCACAGAGCTCCC
ATCCAAGTTTGCAGTGTCTCGTGGTTGGAAGAAACACCTCAACTTTCGCA
AGGAATTCACAAAGTGTGCCTTTCGGGTCCTTGGCCTTGATCCACCAGAA
TGGCTTCCACCAGGGTTGACCGTTTCTGTTGTTTTAATGTCGTTTGATCG
ACCTGATCAAGTAAGACAGATTGTGAAGCATTTCTTGGAGGAAGAAGCAT
TCCATTCTTATGTCCGAGAGATTTTGATTTGGGATGCCAAAGGTGGTGAA
AATCGGTTCGGTGATCTAGAACGTGAATCGACGTCTCGAGAGGACCTTCC
ACGTGTGACATTGGTGAGAATACATCCAGATCCAGGGTTACATGGTCGTT
TTGCTGCTGCACTTCTTGCACGTGAGCCTCTTGTGTTAATTCAAGATGAT
GACTTGATCGTAGGTCCAAGAGCTTTACGTGAATTAGTGTATCGACATTC
CCTTGAACCACATCTTCTCCATGGCATGCATCCTCGAGTACCAAACAAAC
GAATTCCGTATCTCAAAGCAGAATATCGTGGTCTTCAAGTTGGCCCTATT
ATCCTCACAAAAGTACTCTTGGCAAGACGAGAGCACTTTGCATCGTTTTG
GCAGTATGAACCTTTTCTGGCTCCCATAGCAAAACAAGCGAGGCCGCCAT
GGAATGGCGAAGACATTCTATTTAGTTTATCTGTATGCCGACGAAATGGG
GGACAACTCAATCGTGCTTATCCTCAACTCCTCAAAGATGTCACAGAGCT
CCCATCCAAGTTTGCAGTGTCTCGTGGTTGGAAGAAACACCTCAACTTTC
GCAAGGAATTCACAAAGTGTGCCTTTCGGGTCCTTGGCCTTGATCCACCA
GAATGG
back to top