mRNA_M-pyrifera_M_contig75162.17753.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75162.17753.1
Unique NamemRNA_M-pyrifera_M_contig75162.17753.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75162.17753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75162contigM-pyrifera_M_contig75162:68..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.058406-CDS-M-pyrifera_M_contig75162:67..4511622816650.058406-CDS-M-pyrifera_M_contig75162:67..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75162 68..451 +
1692278098.689677-CDS-M-pyrifera_M_contig75162:67..4511692278098.689677-CDS-M-pyrifera_M_contig75162:67..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75162 68..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75162.17753.1prot_M-pyrifera_M_contig75162.17753.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75162 68..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75162.17753.1

>prot_M-pyrifera_M_contig75162.17753.1 ID=prot_M-pyrifera_M_contig75162.17753.1|Name=mRNA_M-pyrifera_M_contig75162.17753.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
APDDTGGAPLVAYIVDILRPVSGGNVWIRTERVLAAVSGSPTAPSPTTSV
RIASLNASTTYTFKAAAETAAGVGNTSVISLAGTTSPAIPPKAVQNVSID
AIKVGSIVLSFDAPSSTGGQPLLCVLIR
back to top

mRNA from alignment at M-pyrifera_M_contig75162:68..451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75162.17753.1 ID=mRNA_M-pyrifera_M_contig75162.17753.1|Name=mRNA_M-pyrifera_M_contig75162.17753.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig75162:68..451+ (Macrocystis pyrifera P11B4 male)
GCTCCTGATGACACAGGTGGAGCACCTTTGGTGGCGTATATTGTTGACAT
CCTTCGACCTGTGAGCGGTGGAAATGTGTGGATTCGCACGGAACGTGTGC
TTGCGGCAGTTTCTGGATCTCCTACTGCACCAAGTCCAACCACATCAGTG
CGGATTGCGTCCTTGAATGCCAGTACAACGTACACATTCAAAGCAGCAGC
AGAAACAGCTGCTGGGGTTGGAAACACTTCTGTCATTTCATTGGCAGGAA
CTACCAGTCCTGCGATTCCACCAAAAGCAGTTCAAAACGTCTCCATTGAT
GCAATCAAAGTAGGTTCTATTGTCCTTTCTTTTGATGCACCATCATCCAC
CGGAGGACAACCATTGTTGTGTGTTTTGATTCGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig75162:68..451+

>mRNA_M-pyrifera_M_contig75162.17753.1 ID=mRNA_M-pyrifera_M_contig75162.17753.1|Name=mRNA_M-pyrifera_M_contig75162.17753.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig75162:68..451+ (Macrocystis pyrifera P11B4 male)
GCTCCTGATGACACAGGTGGAGCACCTTTGGTGGCGTATATTGTTGACAT
CCTTCGACCTGTGAGCGGTGGAAATGTGTGGATTCGCACGGAACGTGTGC
TTGCGGCAGTTTCTGGATCTCCTACTGCACCAAGTCCAACCACATCAGTG
CGGATTGCGTCCTTGAATGCCAGTACAACGTACACATTCAAAGCAGCAGC
AGAAACAGCTGCTGGGGTTGGAAACACTTCTGTCATTTCATTGGCAGGAA
CTACCAGTCCTGCGATTCCACCAAAAGCAGTTCAAAACGTCTCCATTGAT
GCAATCAAAGTAGGTTCTATTGTCCTTTCTTTTGATGCACCATCATCCAC
CGGAGGACAACCATTGTTGTGTGTTTTGATTCGTGCTCCTGATGACACAG
GTGGAGCACCTTTGGTGGCGTATATTGTTGACATCCTTCGACCTGTGAGC
GGTGGAAATGTGTGGATTCGCACGGAACGTGTGCTTGCGGCAGTTTCTGG
ATCTCCTACTGCACCAAGTCCAACCACATCAGTGCGGATTGCGTCCTTGA
ATGCCAGTACAACGTACACATTCAAAGCAGCAGCAGAAACAGCTGCTGGG
GTTGGAAACACTTCTGTCATTTCATTGGCAGGAACTACCAGTCCTGCGAT
TCCACCAAAAGCAGTTCAAAACGTCTCCATTGATGCAATCAAAGTAGGTT
CTATTGTCCTTTCTTTTGATGCACCATCATCCACCGGAGGACAACCATTG
TTGTGTGTTTTGATTCGT
back to top