mRNA_M-pyrifera_M_contig75154.17748.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75154.17748.1
Unique NamemRNA_M-pyrifera_M_contig75154.17748.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: A0A370DTS1_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A370DTS1_9GAMM)

HSP 1 Score: 610 bits (1573), Expect = 7.960e-214
Identity = 306/353 (86.69%), Postives = 322/353 (91.22%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAGDANAPPPTISMHADEFNELIGDEFIPLLNKA 1059
            PA+HAVE DE+DVWM+  ERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDA LLRRVY EAKRAGR KDF +FHLGFP VSARYNAIGNFSRITEVATRIANQLP EGNSAAFKEFAWRFVNIIARALV+L RRPDYQQVRRYINDIEPLF EY   +L  HGA DW  +VEE   KISERNLPAALRGR+ EAI LMR++QTQD YDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYL+E ++RPIFEWM+VIR KGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGV GD+   PPTISMHADEFNELIGDEF+PLLNKA
Sbjct:  162 PALHAVEPDEQDVWMDIGERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDAGLLRRVYAEAKRAGRTKDFYMFHLGFPQVSARYNAIGNFSRITEVATRIANQLPSEGNSAAFKEFAWRFVNIIARALVALNRRPDYQQVRRYINDIEPLFTEYAEAHLDAHGAEDWKEQVEELSSKISERNLPAALRGRSKEAIALMRHLQTQDLYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLDEQDTRPIFEWMEVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVDGDSIDTPPTISMHADEFNELIGDEFVPLLNKA 514          
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: A0A2N6GJW5_9GAMM (Conjugative coupling factor TraD, PFGI-1 class (Fragment) n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2N6GJW5_9GAMM)

HSP 1 Score: 599 bits (1544), Expect = 4.030e-212
Identity = 300/352 (85.23%), Postives = 320/352 (90.91%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAGDANAPPPTISMHADEFNELIGDEFIPLLNK 1056
            PA+HAVE DE+DVWM+  ERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDA LLRRVY EAKRAGR KDF +FHLGFP VSARYNAIGNFSRITEVATRIANQLP EGNSAAFKEFAWRFVNIIARALV+L RRPDYQQVRRYINDIEPLF+EY   +L  HGA  W  +VEE   KISERNLPAALRGR+ EAI LMR++Q Q+ YDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYL++ ++RPIFEWM+VIR KGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGV G++   PPTISMHADEFNELIGDEF+PLLNK
Sbjct:  162 PALHAVEPDEQDVWMDIGERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDAGLLRRVYAEAKRAGRTKDFYMFHLGFPQVSARYNAIGNFSRITEVATRIANQLPSEGNSAAFKEFAWRFVNIIARALVALNRRPDYQQVRRYINDIEPLFMEYAEAHLDAHGAEGWKEQVEELASKISERNLPAALRGRSKEAIALMRHLQAQNLYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLDKNDTRPIFEWMEVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVDGESIDTPPTISMHADEFNELIGDEFVPLLNK 513          
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: UPI0004B90570 (type IV conjugative transfer system coupling protein TraD n=1 Tax=Sedimenticola selenatireducens TaxID=191960 RepID=UPI0004B90570)

HSP 1 Score: 596 bits (1536), Expect = 3.830e-208
Identity = 296/353 (83.85%), Postives = 322/353 (91.22%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAGDANAPPPTISMHADEFNELIGDEFIPLLNKA 1059
            PA+HAVE DE+ VWM+  ERVGHTLVLGTTRVGKTRLAE+LITQDIRRGDVVIVFDPKGDA LL+R+Y EAKR+GRAK+FTLFHLG+P VSARYNAIGNFSRITEVATRIANQLP EGNSAAFKEFAWRFVNIIARALV+L+RRPDYQQVRRYINDIEPLF+EY R +L + GA DW A+VE   G I+ERNL  ALRGRN +AI LMR++Q QD YDPVLDGL+SAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISP+YLNE ++RPIFEWM+VIR KGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGV G+    PPTIS+HADEFNELIGDEFIPLLNKA
Sbjct:  167 PALHAVEPDEQAVWMDIGERVGHTLVLGTTRVGKTRLAEMLITQDIRRGDVVIVFDPKGDAGLLKRIYTEAKRSGRAKEFTLFHLGYPKVSARYNAIGNFSRITEVATRIANQLPSEGNSAAFKEFAWRFVNIIARALVALKRRPDYQQVRRYINDIEPLFMEYARYHLDQQGAEDWKAQVEALAGSINERNLTPALRGRNRDAIALMRHLQAQDHYDPVLDGLMSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPNYLNEEDTRPIFEWMEVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVPGETENTPPTISLHADEFNELIGDEFIPLLNKA 519          
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: A0A3M1CBU3_9PROT (Conjugative coupling factor TraD, PFGI-1 class n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3M1CBU3_9PROT)

HSP 1 Score: 592 bits (1527), Expect = 1.190e-206
Identity = 299/360 (83.06%), Postives = 321/360 (89.17%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAGDANAPP-------PTISMHADEFNELIGDEFIPLLNKA 1059
            PA+HAVE DE+DVWM+  ERVGHTLVLG+TRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVY EAKRAGRA+DF LFHLGFP VSARYNAIG+FSRITEVATRIANQLP EGNSAAFKEFAWRFVNIIARALV+L RRPDYQQ+RRYINDIEPLFVEY R++L R G  +W   VEE  GKISERNL +AL+GR+ +AI +MRY+Q QD YDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTG IAELISPDYLN+ +SRPIFEW+ VIR  GIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVA  A+  P       PTISMHADEFNELIGDEF+PLLNKA
Sbjct:  167 PALHAVEPDEQDVWMDLGERVGHTLVLGSTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYAEAKRAGRARDFYLFHLGFPEVSARYNAIGSFSRITEVATRIANQLPSEGNSAAFKEFAWRFVNIIARALVALGRRPDYQQIRRYINDIEPLFVEYAREHLRRFGQENWATDVEEIAGKISERNLSSALKGRDRDAIAMMRYLQAQDLYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGKIAELISPDYLNDDDSRPIFEWLDVIRRNGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVADPADDTPTRNPTRVPTISMHADEFNELIGDEFVPLLNKA 526          
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: A0A2N6CW44_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=2 Tax=Sedimenticola selenatireducens TaxID=191960 RepID=A0A2N6CW44_9GAMM)

HSP 1 Score: 590 bits (1522), Expect = 5.780e-206
Identity = 300/360 (83.33%), Postives = 316/360 (87.78%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAGD-------ANAPPPTISMHADEFNELIGDEFIPLLNKA 1059
            PA+HAVE DE+DVWM+  ERVGHTLVLGTTRVGKTRLAEILI QDIRRGDVVIVFDPKGDADLLRRVY EA+RAGRAK F +FHLGFP VSARYNAIGNFSRITEVATRIANQLP EGNSAAFKEFAWRFVNIIARALV+L RRPDYQQVRRYINDIEPLF+EY R +L RHGA DW  KV++      ERNLP +LRGRN EAI LMR++Q QD YDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTG IAELISPDYL+EA+ RPIFEWM VIR KGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGV  D       A    PTISMHADEFNELIGDEF+PLLNKA
Sbjct:  162 PALHAVEPDEQDVWMDIGERVGHTLVLGTTRVGKTRLAEILIAQDIRRGDVVIVFDPKGDADLLRRVYAEARRAGRAKAFYMFHLGFPEVSARYNAIGNFSRITEVATRIANQLPSEGNSAAFKEFAWRFVNIIARALVALNRRPDYQQVRRYINDIEPLFMEYARAHLRRHGAEDWQQKVDDIAANTKERNLPNSLRGRNLEAIALMRHLQEQDLYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGKIAELISPDYLDEADPRPIFEWMDVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVEADPINLHKAAAYTLPTISMHADEFNELIGDEFVPLLNKA 521          
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: A4A4G6_9GAMM (Conjugative coupling factor TraD, TOL family n=1 Tax=Congregibacter litoralis KT71 TaxID=314285 RepID=A4A4G6_9GAMM)

HSP 1 Score: 587 bits (1513), Expect = 1.570e-204
Identity = 296/361 (81.99%), Postives = 317/361 (87.81%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAGDANAPP--------PTISMHADEFNELIGDEFIPLLNKA 1059
            PA+HAVE DEEDVWM   ERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRR+Y EAKRAGR  +F LFHLGFP +SARYNAIGNFSRITEVATRIANQLP EGNSAAFKEFAWRFVNI+ARALV+L RRPDYQ +RRYINDIEPLF+EY + YL R GAPDW + VEE  G ISERNL  ALRGR+ +AI LMRY+Q QD YDPV+DGL+SAFKYDKTYFDKIVSSVGPLMEKLTTG IAELISPDYL++ ++RPIFEW+ VIR  GIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGV  D NA P        PTISMHADEFNELIGDEF+PLLNKA
Sbjct:  167 PALHAVEPDEEDVWMNLGERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRIYAEAKRAGRDSEFYLFHLGFPEMSARYNAIGNFSRITEVATRIANQLPSEGNSAAFKEFAWRFVNIVARALVALRRRPDYQHIRRYINDIEPLFIEYAQAYLLREGAPDWASDVEEIAGNISERNLSTALRGRDRKAIALMRYLQAQDLYDPVMDGLLSAFKYDKTYFDKIVSSVGPLMEKLTTGKIAELISPDYLSDNDNRPIFEWLDVIRRGGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVT-DPNAEPGVQPQASLPTISMHADEFNELIGDEFVPLLNKA 526          
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: A0A2N5Y4L4_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A2N5Y4L4_9GAMM)

HSP 1 Score: 584 bits (1505), Expect = 2.040e-203
Identity = 289/353 (81.87%), Postives = 315/353 (89.24%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAGDANAPPPTISMHADEFNELIGDEFIPLLNKA 1059
            PA+HAVE +EED WM+  ERVGH LVLGTTRVGKTRLAE+L+TQDI RGDVVIVFDPKGDADLLRR+Y EA+RAGRA  F LFHLGFP +SARYNAIG+FSRITEVATRIANQLP EGNSAAFKEFAWRFVNI+ARALV+LERRPDYQQ+RRYINDIEPLFVEY R YLA HG  DW   VE+   KISERNL AALRGR+ EAI LMRY+Q QD YDPVL+GLVSAFKYDKTYFDKIVSSVGPLMEKLTTG+IA LISPDYL+E ++RPIFEW+Q+I+ KGIVYVGLDALTDTTVASAVGN+MFADLVSVAGHIYKHGV G      PTIS+HADEFNELIGDEF+PLLNKA
Sbjct:  167 PALHAVEPEEEDAWMDLGERVGHLLVLGTTRVGKTRLAELLVTQDIHRGDVVIVFDPKGDADLLRRIYAEAQRAGRADAFYLFHLGFPEISARYNAIGSFSRITEVATRIANQLPSEGNSAAFKEFAWRFVNIVARALVALERRPDYQQIRRYINDIEPLFVEYARHYLAVHGPEDWADAVEDVAAKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDARPIFEWLQIIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAGTVPTISLHADEFNELIGDEFVPLLNKA 519          
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: UPI00117A1B5F (type IV conjugative transfer system coupling protein TraD n=3 Tax=Solemya velum gill symbiont TaxID=2340 RepID=UPI00117A1B5F)

HSP 1 Score: 577 bits (1487), Expect = 3.170e-202
Identity = 294/360 (81.67%), Postives = 312/360 (86.67%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAGD-------ANAPPPTISMHADEFNELIGDEFIPLLNKA 1059
            PA+HAVE DE+DVWM+  ERVGHTLVLGTTRVGKTRLAEI I QDIRRGDVVIVFDPKGDADLLRRVY EAKRAGRAKDF +FHLG+P VSARYNAIGNFSRITEVATRIANQL  EG SAAFKEFAWRFVNIIARALV+L RRPDY QVRRYINDIEPLF+EY R +L +HG  DW  KV E    I ERNLP +LRGRN EAI LMR++Q QD YDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTG IAELISP+YL+E +SRPIFEW+ VIR KGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGV  D        +   PTISMHADEFNELIGDEF+PLLNKA
Sbjct:   54 PALHAVEPDEQDVWMDIGERVGHTLVLGTTRVGKTRLAEIFIAQDIRRGDVVIVFDPKGDADLLRRVYAEAKRAGRAKDFYMFHLGYPEVSARYNAIGNFSRITEVATRIANQLLSEGKSAAFKEFAWRFVNIIARALVALGRRPDYNQVRRYINDIEPLFMEYARAHLRQHGTEDWQEKVAEIAANIKERNLPNSLRGRNNEAIALMRHLQEQDLYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGKIAELISPNYLDETDSRPIFEWVDVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVDVDPISATQVTSNTMPTISMHADEFNELIGDEFVPLLNKA 413          
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: A0A2E6LLS6_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6LLS6_9GAMM)

HSP 1 Score: 577 bits (1488), Expect = 8.750e-201
Identity = 292/358 (81.56%), Postives = 318/358 (88.83%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAG----DANAPP-PTISMHADEFNELIGDEFIPLLNKA 1059
            PA+HAVE  E+ VWM+ AERVGHTLVLGTTRVGKTRLAE+LI QDIRRGDVVIVFDPKGDADLLRR+Y EAKRAGR +DF LFHLGFP +SARYNAIG+FSRITEVATRIANQLP EGNSAAFKEFAWRFVNIIARALV+LERRPDY QVRRYINDIEPLFVEY +++L   GA  W A+VE    K+SERNLPAALRGR+ EA+ L+RY+Q QDFYDPVLDGL+SAFKYDKTYFDKIVSSVGPLMEKLTTG IAELISPDYL++   RPIFEW  VIR KGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYK GVAG    +A+ P  PTIS+HADEFNELIG+EF+PLLNKA
Sbjct:  167 PALHAVEPQEQPVWMDLAERVGHTLVLGTTRVGKTRLAELLIAQDIRRGDVVIVFDPKGDADLLRRIYAEAKRAGRVQDFFLFHLGFPEISARYNAIGSFSRITEVATRIANQLPSEGNSAAFKEFAWRFVNIIARALVALERRPDYHQVRRYINDIEPLFVEYAQEFLNTRGAAGWEAEVEALAEKVSERNLPAALRGRHREAVALLRYLQAQDFYDPVLDGLISAFKYDKTYFDKIVSSVGPLMEKLTTGRIAELISPDYLSDDGRRPIFEWNDVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKQGVAGIPGDEASDPRLPTISLHADEFNELIGEEFVPLLNKA 524          
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Match: A0A2E7C1V0_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=17 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E7C1V0_9GAMM)

HSP 1 Score: 558 bits (1437), Expect = 4.480e-193
Identity = 285/362 (78.73%), Postives = 308/362 (85.08%), Query Frame = 1
Query:    1 PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGDVVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNFSRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQVRRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGRNAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAG-DANAPPP--------TISMHADEFNELIGDEFIPLLNKA 1059
            PA+HAVE  E+ VWM+  ERVGHTLVLGTTRVGKTRLAE+LITQDIRRGDVVIVFDPKGDADLLRR+Y EAKRAGR +DF LFHLGFP +SARYNAIGNFSRITEVATRIANQLP EGNSAAFKEFAWRFVNIIARALV+L+RRPDYQQ+RRYINDIEPLFVEY        G   W + VEE+   I ERNLP ALRGR+ EAI  MR +Q +  YDPVLDGL+SAFKYDKTYFDKIVSSVGPLMEKLTTG IA LISPDY +E ++RPIFEWM V+R KGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVA  D + P P        TIS+HADEFNELIGDEF+PLLNKA
Sbjct:  162 PALHAVEPQEQPVWMDLGERVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLRRIYAEAKRAGRLEDFYLFHLGFPELSARYNAIGNFSRITEVATRIANQLPNEGNSAAFKEFAWRFVNIIARALVALKRRPDYQQIRRYINDIEPLFVEYAGHCADMAGIDAWASLVEERAADIKERNLPNALRGRSMEAIACMRLLQEKAIYDPVLDGLISAFKYDKTYFDKIVSSVGPLMEKLTTGTIAGLISPDYQDEHDARPIFEWMDVVRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAAKDTDTPDPETKSRSTPTISLHADEFNELIGDEFVPLLNKA 523          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75154.17748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A370DTS1_9GAMM7.960e-21486.69Conjugative coupling factor TraD, PFGI-1 class n=1... [more]
A0A2N6GJW5_9GAMM4.030e-21285.23Conjugative coupling factor TraD, PFGI-1 class (Fr... [more]
UPI0004B905703.830e-20883.85type IV conjugative transfer system coupling prote... [more]
A0A3M1CBU3_9PROT1.190e-20683.06Conjugative coupling factor TraD, PFGI-1 class n=2... [more]
A0A2N6CW44_9GAMM5.780e-20683.33Conjugative coupling factor TraD, PFGI-1 class n=2... [more]
A4A4G6_9GAMM1.570e-20481.99Conjugative coupling factor TraD, TOL family n=1 T... [more]
A0A2N5Y4L4_9GAMM2.040e-20381.87Conjugative coupling factor TraD, PFGI-1 class n=6... [more]
UPI00117A1B5F3.170e-20281.67type IV conjugative transfer system coupling prote... [more]
A0A2E6LLS6_9GAMM8.750e-20181.56Conjugative coupling factor TraD, PFGI-1 class n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75154contigM-pyrifera_M_contig75154:1..1059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score589.0
Seed ortholog evalue1.5e-165
Seed eggNOG ortholog314285.KT71_18006
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TraM recognition site of TraD and TraG
EggNOG OGs1J83J@118884,1MVGD@1224,1RNGF@1236,COG3505@1,COG3505@2
COG Functional cat.U
Best tax levelunclassified Gammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size1059
Cds size1059
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.797331-CDS-M-pyrifera_M_contig75154:0..10591622816649.797331-CDS-M-pyrifera_M_contig75154:0..1059Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75154 1..1059 -
1692278098.5578003-CDS-M-pyrifera_M_contig75154:0..10591692278098.5578003-CDS-M-pyrifera_M_contig75154:0..1059Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75154 1..1059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75154.17748.1prot_M-pyrifera_M_contig75154.17748.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75154 1..1059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75154.17748.1

>prot_M-pyrifera_M_contig75154.17748.1 ID=prot_M-pyrifera_M_contig75154.17748.1|Name=mRNA_M-pyrifera_M_contig75154.17748.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=353bp
PAIHAVELDEEDVWMENAERVGHTLVLGTTRVGKTRLAEILITQDIRRGD
VVIVFDPKGDADLLRRVYVEAKRAGRAKDFTLFHLGFPVVSARYNAIGNF
SRITEVATRIANQLPGEGNSAAFKEFAWRFVNIIARALVSLERRPDYQQV
RRYINDIEPLFVEYTRDYLARHGAPDWMAKVEEQLGKISERNLPAALRGR
NAEAIGLMRYVQTQDFYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLT
TGNIAELISPDYLNEAESRPIFEWMQVIRNKGIVYVGLDALTDTTVASAV
GNSMFADLVSVAGHIYKHGVAGDANAPPPTISMHADEFNELIGDEFIPLL
NKA
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mRNA from alignment at M-pyrifera_M_contig75154:1..1059-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75154.17748.1 ID=mRNA_M-pyrifera_M_contig75154.17748.1|Name=mRNA_M-pyrifera_M_contig75154.17748.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at M-pyrifera_M_contig75154:1..1059- (Macrocystis pyrifera P11B4 male)
CCCGCGATACACGCTGTGGAACTCGACGAAGAAGACGTGTGGATGGAGAA CGCGGAGCGGGTAGGCCACACCCTCGTGCTCGGCACCACGCGGGTAGGCA AGACGCGTCTCGCTGAAATACTGATCACACAGGACATCCGACGCGGCGAT GTCGTGATCGTCTTTGATCCGAAAGGGGACGCCGATCTGCTGCGACGAGT CTACGTCGAAGCGAAGCGGGCAGGACGGGCGAAGGACTTCACGCTGTTTC ATCTCGGATTCCCGGTGGTCTCGGCGCGCTATAACGCGATCGGAAACTTC TCGCGGATCACCGAAGTCGCGACCCGGATTGCGAATCAACTACCGGGGGA AGGCAATTCTGCGGCCTTCAAAGAATTCGCGTGGCGGTTCGTGAATATTA TTGCAAGGGCGTTAGTATCGCTAGAACGCCGGCCCGACTATCAGCAAGTG CGACGTTACATCAACGACATCGAGCCGCTGTTCGTGGAATACACGCGAGA CTATCTCGCACGACATGGCGCGCCCGACTGGATGGCGAAGGTCGAAGAAC AGCTCGGCAAGATTAGCGAACGCAACCTCCCGGCCGCATTGCGGGGCCGA AACGCCGAGGCCATCGGGTTGATGCGCTATGTTCAAACTCAGGACTTCTA CGATCCGGTTCTCGACGGACTCGTCTCGGCATTCAAATACGACAAGACTT ATTTCGACAAGATTGTCAGCTCCGTCGGACCGCTGATGGAGAAGCTCACG ACCGGTAACATCGCCGAGCTCATCTCCCCGGATTACCTTAACGAAGCCGA GTCGCGTCCGATCTTCGAGTGGATGCAGGTGATCCGAAACAAGGGGATCG TCTATGTGGGACTCGACGCGCTGACCGACACCACGGTCGCGAGCGCGGTC GGCAATTCGATGTTCGCGGATCTTGTCTCTGTCGCCGGTCACATCTACAA GCACGGGGTGGCAGGTGACGCGAATGCGCCGCCGCCGACGATTTCCATGC ACGCCGATGAGTTCAACGAGCTCATCGGGGATGAATTTATCCCGCTGCTG AACAAGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75154:1..1059-

>mRNA_M-pyrifera_M_contig75154.17748.1 ID=mRNA_M-pyrifera_M_contig75154.17748.1|Name=mRNA_M-pyrifera_M_contig75154.17748.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2118bp|location=Sequence derived from alignment at M-pyrifera_M_contig75154:1..1059- (Macrocystis pyrifera P11B4 male)
CCCGCGATACACGCTGTGGAACTCGACGAAGAAGACGTGTGGATGGAGAA
CGCGGAGCGGGTAGGCCACACCCTCGTGCTCGGCACCACGCGGGTAGGCA
AGACGCGTCTCGCTGAAATACTGATCACACAGGACATCCGACGCGGCGAT
GTCGTGATCGTCTTTGATCCGAAAGGGGACGCCGATCTGCTGCGACGAGT
CTACGTCGAAGCGAAGCGGGCAGGACGGGCGAAGGACTTCACGCTGTTTC
ATCTCGGATTCCCGGTGGTCTCGGCGCGCTATAACGCGATCGGAAACTTC
TCGCGGATCACCGAAGTCGCGACCCGGATTGCGAATCAACTACCGGGGGA
AGGCAATTCTGCGGCCTTCAAAGAATTCGCGTGGCGGTTCGTGAATATTA
TTGCAAGGGCGTTAGTATCGCTAGAACGCCGGCCCGACTATCAGCAAGTG
CGACGTTACATCAACGACATCGAGCCGCTGTTCGTGGAATACACGCGAGA
CTATCTCGCACGACATGGCGCGCCCGACTGGATGGCGAAGGTCGAAGAAC
AGCTCGGCAAGATTAGCGAACGCAACCTCCCGGCCGCATTGCGGGGCCGA
AACGCCGAGGCCATCGGGTTGATGCGCTATGTTCAAACTCAGGACTTCTA
CGATCCGGTTCTCGACGGACTCGTCTCGGCATTCAAATACGACAAGACTT
ATTTCGACAAGATTGTCAGCTCCGTCGGACCGCTGATGGAGAAGCTCACG
ACCGGTAACATCGCCGAGCTCATCTCCCCGGATTACCTTAACGAAGCCGA
GTCGCGTCCGATCTTCGAGTGGATGCAGGTGATCCGAAACAAGGGGATCG
TCTATGTGGGACTCGACGCGCTGACCGACACCACGGTCGCGAGCGCGGTC
GGCAATTCGATGTTCGCGGATCTTGTCTCTGTCGCCGGTCACATCTACAA
GCACGGGGTGGCAGGTGACGCGAATGCGCCGCCGCCGACGATTTCCATGC
ACGCCGATGAGTTCAACGAGCTCATCGGGGATGAATTTATCCCGCTGCTG
AACAAGGCTCCCGCGATACACGCTGTGGAACTCGACGAAGAAGACGTGTG
GATGGAGAACGCGGAGCGGGTAGGCCACACCCTCGTGCTCGGCACCACGC
GGGTAGGCAAGACGCGTCTCGCTGAAATACTGATCACACAGGACATCCGA
CGCGGCGATGTCGTGATCGTCTTTGATCCGAAAGGGGACGCCGATCTGCT
GCGACGAGTCTACGTCGAAGCGAAGCGGGCAGGACGGGCGAAGGACTTCA
CGCTGTTTCATCTCGGATTCCCGGTGGTCTCGGCGCGCTATAACGCGATC
GGAAACTTCTCGCGGATCACCGAAGTCGCGACCCGGATTGCGAATCAACT
ACCGGGGGAAGGCAATTCTGCGGCCTTCAAAGAATTCGCGTGGCGGTTCG
TGAATATTATTGCAAGGGCGTTAGTATCGCTAGAACGCCGGCCCGACTAT
CAGCAAGTGCGACGTTACATCAACGACATCGAGCCGCTGTTCGTGGAATA
CACGCGAGACTATCTCGCACGACATGGCGCGCCCGACTGGATGGCGAAGG
TCGAAGAACAGCTCGGCAAGATTAGCGAACGCAACCTCCCGGCCGCATTG
CGGGGCCGAAACGCCGAGGCCATCGGGTTGATGCGCTATGTTCAAACTCA
GGACTTCTACGATCCGGTTCTCGACGGACTCGTCTCGGCATTCAAATACG
ACAAGACTTATTTCGACAAGATTGTCAGCTCCGTCGGACCGCTGATGGAG
AAGCTCACGACCGGTAACATCGCCGAGCTCATCTCCCCGGATTACCTTAA
CGAAGCCGAGTCGCGTCCGATCTTCGAGTGGATGCAGGTGATCCGAAACA
AGGGGATCGTCTATGTGGGACTCGACGCGCTGACCGACACCACGGTCGCG
AGCGCGGTCGGCAATTCGATGTTCGCGGATCTTGTCTCTGTCGCCGGTCA
CATCTACAAGCACGGGGTGGCAGGTGACGCGAATGCGCCGCCGCCGACGA
TTTCCATGCACGCCGATGAGTTCAACGAGCTCATCGGGGATGAATTTATC
CCGCTGCTGAACAAGGCT
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