mRNA_M-pyrifera_M_contig75052.17730.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75052.17730.1
Unique NamemRNA_M-pyrifera_M_contig75052.17730.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75052.17730.1 vs. uniprot
Match: A0A7S0P990_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P990_CAFRO)

HSP 1 Score: 168 bits (425), Expect = 2.550e-48
Identity = 86/166 (51.81%), Postives = 116/166 (69.88%), Query Frame = 1 
Query:    7 VAFAFGMVALTAGVGIVCTTYFERTVEMTMFGYAAIDQVLLPVTSLPLAFAACYSPLLADALGEPVEGRSTSIPELLSKTYNEAQWLTLIPFRATMFGREFLFFYLATAFDNLAATYLTMTNLRVILVWIASLLACTVCREFIGIPRHEAATALHPISILFKLAGT 504
            +A A+ ++A TA +GIVCTT FE    +T FGYAA+DQVLLP T+LP+   A     LAD LGEP EGR  +    L++++ EA  LTL+PFRATMFGREFLFF+L TAF +L  TYL MT +RV++ W+ASL+ CT  R++ GI   EA+ +L P ++  ++ GT
Sbjct:  149 IALAWFVLAGTAAIGIVCTTVFEHWYGLTSFGYAAVDQVLLPFTTLPVTLLAVKLSWLADLLGEPAEGRDATCRASLARSWAEADLLTLVPFRATMFGREFLFFWLVTAFKDLTITYLEMTIVRVVMCWVASLVVCTWLRQWSGISASEASDSLRPTTLTMRVVGT 314
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BLAST of mRNA_M-pyrifera_M_contig75052.17730.1 vs. uniprot
Match: A0A5A8C7J0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C7J0_CAFRO)

HSP 1 Score: 168 bits (425), Expect = 9.790e-48
Identity = 86/166 (51.81%), Postives = 116/166 (69.88%), Query Frame = 1 
Query:    7 VAFAFGMVALTAGVGIVCTTYFERTVEMTMFGYAAIDQVLLPVTSLPLAFAACYSPLLADALGEPVEGRSTSIPELLSKTYNEAQWLTLIPFRATMFGREFLFFYLATAFDNLAATYLTMTNLRVILVWIASLLACTVCREFIGIPRHEAATALHPISILFKLAGT 504
            +A A+ ++A TA +GIVCTT FE    +T FGYAA+DQVLLP T+LP+   A     LAD LGEP EGR  +    L++++ EA  LTL+PFRATMFGREFLFF+L TAF +L  TYL MT +RV++ W+ASL+ CT  R++ GI   EA+ +L P ++  ++ GT
Sbjct:  205 IALAWFVLAGTAAIGIVCTTVFEHWYGLTSFGYAAVDQVLLPFTTLPVTLLAVKLSWLADLLGEPAEGRDATCRASLARSWAEADLLTLVPFRATMFGREFLFFWLVTAFKDLTITYLEMTIVRVVMCWVASLVVCTWLRQWSGISASEASDSLRPTTLTMRVVGT 370
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BLAST of mRNA_M-pyrifera_M_contig75052.17730.1 vs. uniprot
Match: A0A812YS10_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YS10_SYMMI)

HSP 1 Score: 139 bits (350), Expect = 6.420e-37
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = 1 
Query:    7 VAFAFGMVALTAGVGIVCTTYFERTVEMTMFGYAAIDQVLLPVTSLPLAFAACYSPLLADALGEPVEGRSTSIPELLSKTYNEAQWLTLIPFRATMFGREFLFFYLATAFDNLAATYLTMTNLRVILVW 393
            +A A+ ++A TA +GIVCTT FE    +T FGYAA+DQVLLP T+LP+   A     LAD LGEP EGR  +    L++++ EA  LTL+PFRATMFGREFLFF+L TAF +L  TYL MT +RV++ W
Sbjct:  218 IALAWFVLAGTAAIGIVCTTVFEHWYGLTSFGYAAVDQVLLPFTTLPVTLLAVKLSWLADLLGEPAEGRDATCRASLARSWAEADLLTLVPFRATMFGREFLFFWLVTAFKDLTITYLEMTIVRVVMCW 346
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BLAST of mRNA_M-pyrifera_M_contig75052.17730.1 vs. uniprot
Match: A0A0L0DAJ6_THETB (FYVE-type domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DAJ6_THETB)

HSP 1 Score: 131 bits (329), Expect = 3.210e-32
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 1 
Query:    1 VGVAFAFGMVALTAGVGIVCTTYFERTVEMTMFGYAAIDQVLLPVTSLPLAFAACYSPLLADALGEPVEGRSTSIPELLSKTYNEAQWLTLIPFRATMFGREFLFFYLATAFDNLAATYLTMTNLRVILVWIASLLACTVCREFIGIPRHEAATALHPISILFKLAGT 504
            VG+  A+  +  T   GIV TTYFE+   + MFGYAA+DQ+LLP T++P        P     L EP      S   L  +T+ E   L +  FR  MFGREFLFFYLAT+FD L   YL MT +R++L ++AS + C     FI + R E    LHP+++ F+L GT
Sbjct:  270 VGILIAWVFLVATTAFGIVITTYFEKEAGLNMFGYAAVDQILLPFTTIPFLICVNLMPAARQVL-EPAHSAEESFVALAKRTWRETALLDMAVFRGLMFGREFLFFYLATSFD-LNLVYLEMTLIRIVLSFLASAIVCKWAATFIHLARRETRRTLHPLNLAFRLFGT 435
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BLAST of mRNA_M-pyrifera_M_contig75052.17730.1 vs. uniprot
Match: A0A813B9X9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B9X9_9DINO)

HSP 1 Score: 85.1 bits (209), Expect = 1.250e-16
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    7 VAFAFGMVALTAGVGIVCTTYFERTVEMTMFGYAAIDQVLLPVTSLPLAFAACYSPLLADALGEP 201
            VA AF ++ALTAG+GIV TTYFE    + MFGYAAIDQ+LLPVTSLP+A+A   SP L  ALGEP
Sbjct:  250 VAAAFAVLALTAGIGIVVTTYFESKAGLNMFGYAAIDQILLPVTSLPVAWALYQSPTLLRALGEP 314
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75052.17730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S0P990_CAFRO2.550e-4851.81Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A5A8C7J0_CAFRO9.790e-4851.81Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A812YS10_SYMMI6.420e-3755.81Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A0L0DAJ6_THETB3.210e-3242.86FYVE-type domain-containing protein n=1 Tax=Thecam... [more]
A0A813B9X9_9DINO1.250e-1667.69Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75052contigM-pyrifera_M_contig75052:171..674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue3.7e-26
Seed eggNOG ortholog529818.AMSG_05365T0
KEGG koko:K21954
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0035091,GO:0043167,GO:0043168,GO:1901981
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size504
Cds size480
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.817467-UTR-M-pyrifera_M_contig75052:170..1941622816648.817467-UTR-M-pyrifera_M_contig75052:170..194Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75052 171..194 +
1692278098.029082-UTR-M-pyrifera_M_contig75052:170..1941692278098.029082-UTR-M-pyrifera_M_contig75052:170..194Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75052 171..194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.8285935-CDS-M-pyrifera_M_contig75052:194..6741622816648.8285935-CDS-M-pyrifera_M_contig75052:194..674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75052 195..674 +
1692278098.0410745-CDS-M-pyrifera_M_contig75052:194..6741692278098.0410745-CDS-M-pyrifera_M_contig75052:194..674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75052 195..674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75052.17730.1prot_M-pyrifera_M_contig75052.17730.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75052 195..674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75052.17730.1

>prot_M-pyrifera_M_contig75052.17730.1 ID=prot_M-pyrifera_M_contig75052.17730.1|Name=mRNA_M-pyrifera_M_contig75052.17730.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
MVALTAGVGIVCTTYFERTVEMTMFGYAAIDQVLLPVTSLPLAFAACYSP
LLADALGEPVEGRSTSIPELLSKTYNEAQWLTLIPFRATMFGREFLFFYL
ATAFDNLAATYLTMTNLRVILVWIASLLACTVCREFIGIPRHEAATALHP
ISILFKLAGT
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mRNA from alignment at M-pyrifera_M_contig75052:171..674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75052.17730.1 ID=mRNA_M-pyrifera_M_contig75052.17730.1|Name=mRNA_M-pyrifera_M_contig75052.17730.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig75052:171..674+ (Macrocystis pyrifera P11B4 male)
GTTGGGGTTGCTTTTGCATTTGGAATGGTGGCATTGACAGCTGGGGTGGG
AATTGTGTGCACTACTTACTTTGAGCGTACTGTGGAAATGACCATGTTTG
GGTATGCGGCAATAGACCAAGTATTGTTGCCAGTGACTTCATTGCCTCTG
GCATTTGCTGCCTGCTACTCTCCTCTACTCGCCGATGCTCTAGGAGAACC
AGTGGAAGGGCGGTCCACCTCCATCCCCGAACTCCTCTCCAAGACCTACA
ACGAAGCTCAGTGGCTCACTCTCATCCCTTTCCGAGCCACCATGTTCGGT
CGAGAATTCCTCTTCTTCTACCTCGCAACCGCCTTTGACAACCTCGCCGC
CACCTACCTCACCATGACCAACCTCAGGGTCATCCTCGTCTGGATCGCGT
CACTCCTCGCATGCACAGTCTGCAGGGAATTCATCGGAATCCCCAGACAC
GAAGCGGCAACAGCGCTCCATCCCATCTCCATCCTGTTCAAACTCGCAGG
AACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75052:171..674+

>mRNA_M-pyrifera_M_contig75052.17730.1 ID=mRNA_M-pyrifera_M_contig75052.17730.1|Name=mRNA_M-pyrifera_M_contig75052.17730.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig75052:171..674+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCATTGACAGCTGGGGTGGGAATTGTGTGCACTACTTACTTTGA
GCGTACTGTGGAAATGACCATGTTTGGGTATGCGGCAATAGACCAAGTAT
TGTTGCCAGTGACTTCATTGCCTCTGGCATTTGCTGCCTGCTACTCTCCT
CTACTCGCCGATGCTCTAGGAGAACCAGTGGAAGGGCGGTCCACCTCCAT
CCCCGAACTCCTCTCCAAGACCTACAACGAAGCTCAGTGGCTCACTCTCA
TCCCTTTCCGAGCCACCATGTTCGGTCGAGAATTCCTCTTCTTCTACCTC
GCAACCGCCTTTGACAACCTCGCCGCCACCTACCTCACCATGACCAACCT
CAGGGTCATCCTCGTCTGGATCGCGTCACTCCTCGCATGCACAGTCTGCA
GGGAATTCATCGGAATCCCCAGACACGAAGCGGCAACAGCGCTCCATCCC
ATCTCCATCCTGTTCAAACTCGCAGGAACAATGGTGGCATTGACAGCTGG
GGTGGGAATTGTGTGCACTACTTACTTTGAGCGTACTGTGGAAATGACCA
TGTTTGGGTATGCGGCAATAGACCAAGTATTGTTGCCAGTGACTTCATTG
CCTCTGGCATTTGCTGCCTGCTACTCTCCTCTACTCGCCGATGCTCTAGG
AGAACCAGTGGAAGGGCGGTCCACCTCCATCCCCGAACTCCTCTCCAAGA
CCTACAACGAAGCTCAGTGGCTCACTCTCATCCCTTTCCGAGCCACCATG
TTCGGTCGAGAATTCCTCTTCTTCTACCTCGCAACCGCCTTTGACAACCT
CGCCGCCACCTACCTCACCATGACCAACCTCAGGGTCATCCTCGTCTGGA
TCGCGTCACTCCTCGCATGCACAGTCTGCAGGGAATTCATCGGAATCCCC
AGACACGAAGCGGCAACAGCGCTCCATCCCATCTCCATCCTGTTCAAACT
CGCAGGAACA
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