mRNA_M-pyrifera_M_contig7503.17726.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7503.17726.1
Unique NamemRNA_M-pyrifera_M_contig7503.17726.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: D8LBN6_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN6_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.160e-18
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1
Query:    7 SVLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLLG---AAAKK 168
            SVLD+KR LEP+TGVPF RQKL+FKGILRD D IG+TK+VEGAKVMLLG   AAAKK
Sbjct:  292 SVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVEGAKVMLLGTVAAAAKK 348          
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: A0A6H5K1V2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.420e-18
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    7 SVLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLLG--AAAKK 168
            SVLD+KR LEP+TGVPF RQKL+FKGILRD D IG+TK+VEGAKVMLLG  AAAKK
Sbjct:  378 SVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVEGAKVMLLGTAAAAKK 433          
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: A0A8H7PMB8_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PMB8_MORIS)

HSP 1 Score: 56.6 bits (135), Expect = 6.160e-8
Identity = 23/50 (46.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    7 SVLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLLGA 156
            ++LD+K+ L+ LTGVP  RQKL+FKG++++   +   KV +G+K+ML+G+
Sbjct:   27 TILDLKQHLQDLTGVPVERQKLMFKGLMKNEQTLSEAKVSQGSKIMLIGS 76          
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: A0A7S3UX29_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX29_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 5.140e-7
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    7 SVLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLL 150
            +VLD+K  LE LTG+P  +QKL++KGIL+D+ +I  T V  GAKV+L+
Sbjct:  222 TVLDLKVKLEQLTGIPVQQQKLLYKGILQDSQVICGTAVKAGAKVILM 269          
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: A0A1S8W1H9_9FUNG (Ubiquitin-like domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W1H9_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 7.990e-6
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   10 VLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLLGAAAK 165
            V D+K  L  +TG+  + QKL+FKG+LRD  +I  T++  G+KVM++ + AK
Sbjct:   64 VRDLKVALAEVTGIEPSMQKLLFKGVLRDEQIISETQLKSGSKVMMMASTAK 115          
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: UPI0003F0EE8C (ubiquitin domain-containing protein UBFD1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0EE8C)

HSP 1 Score: 50.4 bits (119), Expect = 8.900e-6
Identity = 21/52 (40.38%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 DRSVLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLLGA 156
            D +V ++K+ ++ LT VP   QK++FKG+++D   +  +KV++GAKVM++G+
Sbjct:  121 DNTVANLKQHIQTLTAVPPAMQKVMFKGLMKDDKTLRDSKVIKGAKVMVVGS 172          
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: A0A6P7FGB5_DIAVI (ubiquitin domain-containing protein UBFD1-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FGB5_DIAVI)

HSP 1 Score: 50.4 bits (119), Expect = 9.510e-6
Identity = 20/50 (40.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    7 SVLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLLGA 156
            ++L++K+ L+ L GVP   QKL++KG+L+D   I ++ + +G+K+ML+G+
Sbjct:   90 TILELKKHLQDLLGVPDAMQKLMYKGLLQDTQTISNSGITKGSKIMLVGS 139          
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: A0A1S8W1M9_9FUNG (Ubiquitin-like domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W1M9_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 1.210e-5
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   10 VLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLLGAAAK 165
            V D+K  L  +TG+  + QKL+FKG+LRD  +I  T++  G+KVM++ + AK
Sbjct:   64 VRDLKVALAEVTGIEPSMQKLLFKGVLRDEQIISETQLKSGSKVMMMASTAK 115          
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: A0A8H7PJG2_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PJG2_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 2.500e-5
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    7 SVLDIKRLLEPLTGVPFTRQKLVFKGILRD-ADLIGSTKVVEGAKVMLLGA 156
            +V ++K  ++ LTGVP  RQKL++KG+LRD A  + + K+ +G KVML+G+
Sbjct:   27 TVEELKLHVQDLTGVPVERQKLMYKGLLRDNAQTLVNAKIQDGVKVMLIGS 77          
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Match: UPI002027146F (ubiquitin domain-containing protein UBFD1 isoform X1 n=2 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002027146F)

HSP 1 Score: 48.5 bits (114), Expect = 4.610e-5
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 DRSVLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLLGA 156
            D +  D+K+ +  LTG+P T QK++FKG+L +   +   KV+ GAK+M++G+
Sbjct:   85 DSTGADLKQKIHALTGLPPTMQKVMFKGLLPEEKTLREIKVINGAKIMVVGS 136          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7503.17726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LBN6_ECTSI1.160e-1878.95Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A6H5K1V2_9PHAE1.420e-1880.36Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A8H7PMB8_MORIS6.160e-846.00Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A7S3UX29_HETAK5.140e-754.17Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A1S8W1H9_9FUNG7.990e-644.23Ubiquitin-like domain-containing protein n=1 Tax=B... [more]
UPI0003F0EE8C8.900e-640.38ubiquitin domain-containing protein UBFD1-like n=1... [more]
A0A6P7FGB5_DIAVI9.510e-640.00ubiquitin domain-containing protein UBFD1-like n=1... [more]
A0A1S8W1M9_9FUNG1.210e-544.23Ubiquitin-like domain-containing protein n=1 Tax=B... [more]
A0A8H7PJG2_9FUNG2.500e-547.06Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
UPI002027146F4.610e-540.38ubiquitin domain-containing protein UBFD1 isoform ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7503contigM-pyrifera_M_contig7503:7139..7309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionAN1-type zinc finger and ubiquitin-like protein
Ec32 orthologEc-27_003310.1
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.5743036-CDS-M-pyrifera_M_contig7503:7138..73091622816648.5743036-CDS-M-pyrifera_M_contig7503:7138..7309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7503 7139..7309 +
1692278097.8566-CDS-M-pyrifera_M_contig7503:7138..73091692278097.8566-CDS-M-pyrifera_M_contig7503:7138..7309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7503 7139..7309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7503.17726.1prot_M-pyrifera_M_contig7503.17726.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7503 7139..7309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7503.17726.1

>prot_M-pyrifera_M_contig7503.17726.1 ID=prot_M-pyrifera_M_contig7503.17726.1|Name=mRNA_M-pyrifera_M_contig7503.17726.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
DRSVLDIKRLLEPLTGVPFTRQKLVFKGILRDADLIGSTKVVEGAKVMLL
GAAAKK*
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mRNA from alignment at M-pyrifera_M_contig7503:7139..7309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7503.17726.1 ID=mRNA_M-pyrifera_M_contig7503.17726.1|Name=mRNA_M-pyrifera_M_contig7503.17726.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig7503:7139..7309+ (Macrocystis pyrifera P11B4 male)
GACCGAAGCGTGTTGGACATCAAGCGACTCCTGGAGCCCCTCACAGGTGT TCCTTTCACCCGCCAGAAGCTTGTATTCAAGGGCATTTTGCGCGACGCCG ATTTGATTGGCTCTACGAAGGTAGTCGAGGGCGCTAAGGTCATGCTCCTT GGAGCGGCGGCCAAAAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7503:7139..7309+

>mRNA_M-pyrifera_M_contig7503.17726.1 ID=mRNA_M-pyrifera_M_contig7503.17726.1|Name=mRNA_M-pyrifera_M_contig7503.17726.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig7503:7139..7309+ (Macrocystis pyrifera P11B4 male)
GACCGAAGCGTGTTGGACATCAAGCGACTCCTGGAGCCCCTCACAGGTGT
TCCTTTCACCCGCCAGAAGCTTGTATTCAAGGGCATTTTGCGCGACGCCG
ATTTGATTGGCTCTACGAAGGTAGTCGAGGGCGCTAAGGTCATGCTCCTT
GGAGCGGCGGCCAAAAAGTGAGACCGAAGCGTGTTGGACATCAAGCGACT
CCTGGAGCCCCTCACAGGTGTTCCTTTCACCCGCCAGAAGCTTGTATTCA
AGGGCATTTTGCGCGACGCCGATTTGATTGGCTCTACGAAGGTAGTCGAG
GGCGCTAAGGTCATGCTCCTTGGAGCGGCGGCCAAAAAGTGA
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