mRNA_M-pyrifera_M_contig7502.17724.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7502.17724.1
Unique NamemRNA_M-pyrifera_M_contig7502.17724.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.570e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   19 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR
Sbjct:   64 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 110
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BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: A0A6H5KRJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.060e-21
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   19 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            QDLLRPFLLACNHADASPHLM MAM SIQYLINRDAILPSDAPNILR
Sbjct:   64 QDLLRPFLLACNHADASPHLMTMAMDSIQYLINRDAILPSDAPNILR 110
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BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: A0A835YQS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.490e-14
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   19 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            QDLLRPFLLACNH+DA   L+ MA+GS+Q+LINRDA+ P+DAPN++R
Sbjct:   63 QDLLRPFLLACNHSDAPAKLIGMALGSVQHLINRDAVSPADAPNVMR 109
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BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: A0A4D9CR02_9STRA (Protein MON2 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR02_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.730e-13
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   19 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            Q++LRPFLLACNH+D S  +++ A+GSI +LIN+DAI PSDAPNILR
Sbjct:   62 QEVLRPFLLACNHSDCSKAIILHALGSITHLINKDAISPSDAPNILR 108
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BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: A0A662Y4N1_9STRA (DCB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4N1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.580e-7
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   19 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            + +LRPFLLACNH +AS  ++++A+ SIQ L++ DAI P+   +ILR
Sbjct:   64 ESVLRPFLLACNHTNASHKILVLALASIQRLVSWDAIDPASVGSILR 110
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BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: A0A484DUD8_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUD8_BRELC)

HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   10 LFRQD-LLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            LF+ D +LRPFLLACNH +AS  ++++A  SIQ L++ DAI P+   +ILR
Sbjct:   60 LFQSDSVLRPFLLACNHTNASHKILLLAFSSIQRLVSWDAIAPASVSSILR 110
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BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: A0A3M6VG68_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VG68_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.350e-7
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   19 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            + +LRPFLLACNH +AS  ++++A+ SIQ L++ DAI P+   +ILR
Sbjct:   64 ESVLRPFLLACNHTNASQKILVLALASIQRLVSWDAIEPTSVGSILR 110
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BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: A0A3F2RRM7_9STRA (Protein MON2 homolog n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRM7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.310e-7
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   19 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            + +LRPFLLACNH +AS  ++++A+ SIQ L++ DAI P+   +ILR
Sbjct:   95 ESVLRPFLLACNHTNASHKILVLALASIQRLVSWDAIEPTSVGSILR 141
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BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: D0NBH6_PHYIT (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0NBH6_PHYIT)

HSP 1 Score: 53.5 bits (127), Expect = 7.320e-7
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   19 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            + +LRPFLLACNH +AS  ++++A+ SIQ L++ DAI P+   +ILR
Sbjct:   64 ESVLRPFLLACNHTNASHKILVLALSSIQRLVSWDAIEPASVGSILR 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Match: G5A5B2_PHYSP (Protein MON2 homolog n=5 Tax=Phytophthora TaxID=4783 RepID=G5A5B2_PHYSP)

HSP 1 Score: 53.5 bits (127), Expect = 7.320e-7
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   19 QDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPNILR 159
            + +LRPFLLACNH +AS  ++++A+ SIQ L++ DAI P+   +ILR
Sbjct:   64 ESVLRPFLLACNHTNASHKILVLALSSIQRLVSWDAIEPASVGSILR 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7502.17724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LQH8_ECTSI2.570e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRJ9_9PHAE5.060e-2195.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YQS4_9STRA2.490e-1470.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CR02_9STRA7.730e-1368.09Protein MON2 homolog n=1 Tax=Nannochloropsis salin... [more]
A0A662Y4N1_9STRA3.580e-751.06DCB domain-containing protein n=1 Tax=Nothophytoph... [more]
A0A484DUD8_BRELC3.910e-752.94Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3M6VG68_9STRA5.350e-751.06Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A3F2RRM7_9STRA7.310e-751.06Protein MON2 homolog n=4 Tax=Phytophthora kernovia... [more]
D0NBH6_PHYIT7.320e-751.06Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
G5A5B2_PHYSP7.320e-751.06Protein MON2 homolog n=5 Tax=Phytophthora TaxID=47... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7502contigM-pyrifera_M_contig7502:12558..12719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue7.3e-19
Seed eggNOG ortholog2880.D8LQH8
KEGG koko:K18466
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein transport
EggNOG OGsKOG1848@1,KOG1848@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size162
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.5105991-CDS-M-pyrifera_M_contig7502:12557..127191622816648.5105991-CDS-M-pyrifera_M_contig7502:12557..12719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7502 12558..12719 +
1692278097.8295553-CDS-M-pyrifera_M_contig7502:12557..127191692278097.8295553-CDS-M-pyrifera_M_contig7502:12557..12719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7502 12558..12719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7502.17724.1prot_M-pyrifera_M_contig7502.17724.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7502 12558..12719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7502.17724.1

>prot_M-pyrifera_M_contig7502.17724.1 ID=prot_M-pyrifera_M_contig7502.17724.1|Name=mRNA_M-pyrifera_M_contig7502.17724.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MFFLFRQDLLRPFLLACNHADASPHLMIMAMGSIQYLINRDAILPSDAPN
ILR*
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mRNA from alignment at M-pyrifera_M_contig7502:12558..12719+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7502.17724.1 ID=mRNA_M-pyrifera_M_contig7502.17724.1|Name=mRNA_M-pyrifera_M_contig7502.17724.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig7502:12558..12719+ (Macrocystis pyrifera P11B4 male)
ATGTTTTTTCTTTTCCGGCAGGACCTCCTCCGACCGTTCCTTCTAGCGTG
CAACCATGCCGACGCCTCCCCCCACCTGATGATCATGGCCATGGGGTCCA
TACAGTACCTCATCAATCGAGACGCCATCCTGCCTTCGGACGCGCCCAAC
ATACTCAGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7502:12558..12719+

>mRNA_M-pyrifera_M_contig7502.17724.1 ID=mRNA_M-pyrifera_M_contig7502.17724.1|Name=mRNA_M-pyrifera_M_contig7502.17724.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig7502:12558..12719+ (Macrocystis pyrifera P11B4 male)
ATGTTTTTTCTTTTCCGGCAGGACCTCCTCCGACCGTTCCTTCTAGCGTG
CAACCATGCCGACGCCTCCCCCCACCTGATGATCATGGCCATGGGGTCCA
TACAGTACCTCATCAATCGAGACGCCATCCTGCCTTCGGACGCGCCCAAC
ATACTCAGGTAAATGTTTTTTCTTTTCCGGCAGGACCTCCTCCGACCGTT
CCTTCTAGCGTGCAACCATGCCGACGCCTCCCCCCACCTGATGATCATGG
CCATGGGGTCCATACAGTACCTCATCAATCGAGACGCCATCCTGCCTTCG
GACGCGCCCAACATACTCAGGTAA
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