mRNA_M-pyrifera_M_contig75009.17720.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75009.17720.1
Unique NamemRNA_M-pyrifera_M_contig75009.17720.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: A0A7S0X280_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X280_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 7.870e-10
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 1
Query:   25 SGAAELKAAGDACFRKGDLEGARKKYGEALDVGGEVEDGFLSAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREALFCVKEVVGLSKGVEAA 375
            S A  L+ AG+  FR+GD  GA   Y   + V    +D  ++A+ N RAEC LR  QF  AL D  A L            K+L+++A AL GLGR  +A+  +KE++ +    EAA
Sbjct:   50 SSAEALREAGNELFRRGDYGGAAAMYASCISV----DDSDVAALAN-RAECYLRARQFHLALADATASLAAD-----PTYNKSLYKRAMALNGLGRYADAIKALKELLAVETSDEAA 156          
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: C1EDU7_MICCC (SET domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EDU7_MICCC)

HSP 1 Score: 62.0 bits (149), Expect = 1.750e-8
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   40 LKAAGDACFRKGDLEGARKKYGEALDVGGEVEDGFLSAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREALFCVKEVV 348
            L+  G+  FR+GD   A  +Y EAL V  + +D    A   NRAEC LR+ QF  AL D  A L            KAL+++A AL GLGR  +A+  +K+++
Sbjct:   41 LREQGNELFRRGDYGAAAARYAEALKV--KADDAMTLA---NRAECYLRVRQFHLALVDADAALAAD-----PSHHKALYKRAMALNGLGRYPDAIKTLKQLL 133          
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: A0A2P6V497_9CHLO (Malonate-ligase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V497_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 1.890e-8
Identity = 44/107 (41.12%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    7 LVSLLMSGAAELKAAGDACFRKGDLEGARKKYGEALDV-GGEVEDGFLSAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREA 324
            L+ +  + AA LKA G+A F KG+L  A   + EAL +   +     L  +  NRA  AL+LG F  AL+D  A L            KAL+RKA AL+GLGR R+A
Sbjct:  373 LLGMSAAAAAALKAKGNAEFSKGELAAAVSSWTEALSLLDRQPNPQGLHLLYGNRAAAALKLGDFTAALRDAEAALAVE-----PAWAKALYRKAAALQGLGRRRDA 474          
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: A0A6J0UVS8_9SAUR (zinc finger CCCH domain-containing protein 7A isoform X1 n=3 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0UVS8_9SAUR)

HSP 1 Score: 60.1 bits (144), Expect = 8.610e-8
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1
Query:   52 GDACFRKGDLEGARKKYGEALDV-------GGEVEDGFLSAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREA 324
            G+  +R+GD EG+   Y EAL++       G  + D  L  +R NR  C  R GQ    L+D   VL  +     E   +AL+RKA+AL+ LGR++EA
Sbjct:   50 GNDAYREGDWEGSLNHYSEALNIADYASSEGVHIPDDILEKLRVNRIACYSRKGQHSRVLEDCVVVLKLN-----ENNFRALYRKAKALKELGRIKEA 142          
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: A0A5B8MGK7_9CHLO (Protein unc-45 homolog B n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MGK7_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 2.160e-7
Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   40 LKAAGDACFRKGDLEGARKKYGEALDVGGEVEDGFL-SAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREALFCVKEVVGLSKGVEAAQKAAMDLGRRLAER 417
            LK  G+  F+KGD   A   Y +AL   G+ E G + + + +NRA   L+LG  E A++D    L        +   KA FR+A AL+ LGRL EAL   K+V  L +      KA  D  R + +R
Sbjct:    8 LKEEGNGLFKKGDYAEALGAYTKALVSCGDAEAGGIRTTLYSNRAAVNLKLGNLEAAIEDCATCLSFD-----DSNAKARFRRAEALQRLGRLEEAL---KDVAVLCRE-HPKSKAFQDKARAIRDR 125          
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: UPI0007DB7E4C (sperm-associated antigen 1 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0007DB7E4C)

HSP 1 Score: 58.9 bits (141), Expect = 2.170e-7
Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 1
Query:   40 LKAAGDACFRKGDLEGARKKYGEALDVGGEVEDGFLSAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREALFCVKEVVGLSKGVEAAQKAAMDLGRRL 408
            LK  G+   +KG+ EGA KKY E + +  +        +  NRA C L+L QFE+A +D   VL   G        KAL+R+A A +GL   + ++  + +V+ +   ++ A+K   +  R L
Sbjct:  676 LKKQGNEFVKKGNTEGALKKYSECIKLNPQE-----LTIYTNRALCYLKLSQFEEAKKDCDYVLQTDG-----CNIKALYRRALAFKGLENYKASIDDLNKVLLIDPHIDEAKKELQETTRLL 788          
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: UPI001F0736B3 (protein unc-45 homolog A n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F0736B3)

HSP 1 Score: 58.2 bits (139), Expect = 4.020e-7
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 1
Query:   34 AELKAAGDACFRKGDLEGARKKYGEALDVGGEVEDGFLSAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREALFCVKEVVGLSKGVEAAQKAAMDLGRRLAER 417
            A LK  G+A F+ GD++GA   Y +AL +     +  +  +  NR+ C L+L  +  A  D    L+   G   +V  KALFR+A+AL+ LGRL +A    +    L    +A Q+    +G ++ ++
Sbjct:   11 AALKEEGNALFKAGDMQGALCCYSKALKLSDSQTENAV--LHRNRSACYLKLEDYTKAESDASKALNADPG---DV--KALFRRAQALQKLGRLDQAFMDAQRCAQLEPKNKAFQELLRQMGAQIQQK 131          
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: UPI001863AF21 (protein unc-45 homolog A-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001863AF21)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-6
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 1
Query:   31 AAELKAAGDACFRKGDLEGARKKYGEALDVGGEVEDGFLSAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREALFCVKEVVGLSKGVEAAQKAAMDLGRRL 408
            AA L+  G+  F+ G+++GA   Y +AL +     D  +  +  NRA C L+L  +  A +D    LD   G   +V  KA FR+A+A++ LGRL +A   V++   +    E   KA  DL R+L
Sbjct:   10 AAALREEGNNLFKNGNIQGALCCYTKALKISDSQSDSAV--LHRNRAACYLKLEDYSKAEEDATKALDTDPG---DV--KARFRRAQAMQKLGRLDQAFLDVQKCAHM----EPKNKAFQDLLRQL 124          
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: A0A7S3CZE1_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CZE1_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 1.200e-6
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   43 KAAGDACFRKGDLEGARKKYGEALDVGGEVEDGFLSAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREALFCVKEVVGLSKGVEAAQKAAMDL 396
            K  G+AC +KGDLEGA   Y  +LD+    ED  +  V +NRA   L+  ++++A+QD  A L            KA +R+A AL  LG  + A+  +K V+ L    +AA+K   D+
Sbjct:   85 KDRGNACLKKGDLEGALGMYNRSLDL----EDSAI--VLSNRALVNLKTKKYKEAIQDCDAALALD-----RKYVKAAWRRATALRELGDTKRAIEDMKWVLTLEPSNKAAKKELDDM 191          
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Match: A0A7S1DJ57_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DJ57_HEMAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.210e-6
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   43 KAAGDACFRKGDLEGARKKYGEALDVGGEVEDGFLSAVRNNRAECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLREAL 327
            K+ G+  F  GD  GA + +  A++ GG V +    A   NR+   +RL  +E +L+D    L   GG       KA +RK +ALEGLGRL+EA+
Sbjct:    8 KSQGNEKFAIGDYSGAVECFTRAIEAGGGVPN---VAYLTNRSAAYVRLADYESSLRDACDALGADGG-----HVKAWYRKGQALEGLGRLQEAV 94          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75009.17720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0X280_9CHLO7.870e-1037.61Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
C1EDU7_MICCC1.750e-838.83SET domain-containing protein n=1 Tax=Micromonas c... [more]
A0A2P6V497_9CHLO1.890e-841.12Malonate-ligase n=1 Tax=Micractinium conductrix Ta... [more]
A0A6J0UVS8_9SAUR8.610e-837.76zinc finger CCCH domain-containing protein 7A isof... [more]
A0A5B8MGK7_9CHLO2.160e-736.22Protein unc-45 homolog B n=2 Tax=Chloropicon primu... [more]
UPI0007DB7E4C2.170e-731.71sperm-associated antigen 1 n=1 Tax=Anolis caroline... [more]
UPI001F0736B34.020e-731.25protein unc-45 homolog A n=1 Tax=Hypomesus transpa... [more]
UPI001863AF211.010e-634.13protein unc-45 homolog A-like n=1 Tax=Megalops cyp... [more]
A0A7S3CZE1_9EUKA1.200e-635.59Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S1DJ57_HEMAN1.210e-637.89Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75009contigM-pyrifera_M_contig75009:175..594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score72.4
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog10141.ENSCPOP00000001599
Preferred nameUNC45A
KEGG koko:K21991
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0006457,GO:0008150,GO:0009987,GO:0012505,GO:0016604,GO:0016607,GO:0031072,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051879,GO:0061077,GO:0070013
EggNOG free text desc.Hsp90 protein binding
EggNOG OGs35JX1@314146,38EWU@33154,3BCPU@33208,3CSQ0@33213,3J1W5@40674,4837T@7711,48XMK@7742,4Q0DE@9989,KOG4151@1,KOG4151@2759
COG Functional cat.DO
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons1
Model size420
Cds size399
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.2639818-UTR-M-pyrifera_M_contig75009:174..1951622816648.2639818-UTR-M-pyrifera_M_contig75009:174..195Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75009 175..195 +
1692278097.6792552-UTR-M-pyrifera_M_contig75009:174..1951692278097.6792552-UTR-M-pyrifera_M_contig75009:174..195Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75009 175..195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.275651-CDS-M-pyrifera_M_contig75009:195..5941622816648.275651-CDS-M-pyrifera_M_contig75009:195..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75009 196..594 +
1692278097.6918983-CDS-M-pyrifera_M_contig75009:195..5941692278097.6918983-CDS-M-pyrifera_M_contig75009:195..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75009 196..594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75009.17720.1prot_M-pyrifera_M_contig75009.17720.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75009 196..594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75009.17720.1

>prot_M-pyrifera_M_contig75009.17720.1 ID=prot_M-pyrifera_M_contig75009.17720.1|Name=mRNA_M-pyrifera_M_contig75009.17720.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MSGAAELKAAGDACFRKGDLEGARKKYGEALDVGGEVEDGFLSAVRNNRA
ECALRLGQFEDALQDVGAVLDGSGGMGPEVRRKALFRKARALEGLGRLRE
ALFCVKEVVGLSKGVEAAQKAAMDLGRRLAERM
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mRNA from alignment at M-pyrifera_M_contig75009:175..594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75009.17720.1 ID=mRNA_M-pyrifera_M_contig75009.17720.1|Name=mRNA_M-pyrifera_M_contig75009.17720.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig75009:175..594+ (Macrocystis pyrifera P11B4 male)
CCGCCACTTGTTTCCCTTCTCATGTCGGGGGCTGCGGAGTTGAAAGCCGC GGGAGATGCTTGTTTTCGGAAAGGCGATTTGGAGGGGGCGAGGAAGAAGT ACGGAGAGGCGCTAGATGTTGGTGGAGAGGTGGAGGATGGGTTTTTGAGC GCCGTTCGGAATAATAGGGCAGAGTGCGCGTTGCGTTTGGGGCAGTTTGA GGATGCCTTGCAGGACGTGGGCGCTGTGCTGGATGGGAGTGGCGGGATGG GCCCTGAGGTGCGCAGGAAGGCGTTGTTTCGGAAAGCGAGGGCTTTGGAG GGGCTAGGGAGGCTGCGAGAGGCACTGTTTTGTGTCAAGGAAGTGGTGGG GTTGAGCAAAGGGGTGGAGGCAGCACAAAAGGCAGCGATGGATCTGGGAA GGAGGCTAGCGGAGCGAATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75009:175..594+

>mRNA_M-pyrifera_M_contig75009.17720.1 ID=mRNA_M-pyrifera_M_contig75009.17720.1|Name=mRNA_M-pyrifera_M_contig75009.17720.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig75009:175..594+ (Macrocystis pyrifera P11B4 male)
ATGTCGGGGGCTGCGGAGTTGAAAGCCGCGGGAGATGCTTGTTTTCGGAA
AGGCGATTTGGAGGGGGCGAGGAAGAAGTACGGAGAGGCGCTAGATGTTG
GTGGAGAGGTGGAGGATGGGTTTTTGAGCGCCGTTCGGAATAATAGGGCA
GAGTGCGCGTTGCGTTTGGGGCAGTTTGAGGATGCCTTGCAGGACGTGGG
CGCTGTGCTGGATGGGAGTGGCGGGATGGGCCCTGAGGTGCGCAGGAAGG
CGTTGTTTCGGAAAGCGAGGGCTTTGGAGGGGCTAGGGAGGCTGCGAGAG
GCACTGTTTTGTGTCAAGGAAGTGGTGGGGTTGAGCAAAGGGGTGGAGGC
AGCACAAAAGGCAGCGATGGATCTGGGAAGGAGGCTAGCGGAGCGAATGA
TGTCGGGGGCTGCGGAGTTGAAAGCCGCGGGAGATGCTTGTTTTCGGAAA
GGCGATTTGGAGGGGGCGAGGAAGAAGTACGGAGAGGCGCTAGATGTTGG
TGGAGAGGTGGAGGATGGGTTTTTGAGCGCCGTTCGGAATAATAGGGCAG
AGTGCGCGTTGCGTTTGGGGCAGTTTGAGGATGCCTTGCAGGACGTGGGC
GCTGTGCTGGATGGGAGTGGCGGGATGGGCCCTGAGGTGCGCAGGAAGGC
GTTGTTTCGGAAAGCGAGGGCTTTGGAGGGGCTAGGGAGGCTGCGAGAGG
CACTGTTTTGTGTCAAGGAAGTGGTGGGGTTGAGCAAAGGGGTGGAGGCA
GCACAAAAGGCAGCGATGGATCTGGGAAGGAGGCTAGCGGAGCGAATG
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