mRNA_M-pyrifera_M_contig74898.17703.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74898.17703.1
Unique NamemRNA_M-pyrifera_M_contig74898.17703.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: L8H5H5_ACACA (Glycoside hydrolase family protein n=2 Tax=Acanthamoeba castellanii TaxID=5755 RepID=L8H5H5_ACACA)

HSP 1 Score: 139 bits (350), Expect = 4.940e-36
Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 1
Query:    1 ALDIAVDVGKSTGELVRLWQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYLDGNVN------MVNVFNSYDFLLSLGVRPLVEMSFMPEMLASNTSLTVMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            +L+  VD  K T +    W+E +GSGHA + +R D+R     A  D G+K  R+HGI+DDD+ST L  + +        N+ + YDFLLS+G++P VE+SFMPE LASN++  V HYKG  SPP D++K     +  +   + RYG  EV  W FEVWNE
Sbjct:   39 SLNFVVDANKPTIQWKHYWKECVGSGHALLALREDYRAHLEMARRDLGVKFVRFHGIYDDDLSTLLSVDASGKQTYSFFNLDSIYDFLLSIGMKPYVELSFMPEALASNSTY-VFHYKGNTSPPKDYEKWTDLVTAHIRHTIERYGIDEVRSWYFEVWNE 197          
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: A0A6A5CHU4_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5CHU4_NAEFO)

HSP 1 Score: 139 bits (350), Expect = 6.070e-36
Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = 1
Query:   55 WQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYLDGN--------VNMVNVFNSYDFLLSLGVRPLVEMSFMPEMLASNTSLTVMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            W+  +GSGHAS+ + + WRE   +A  + G    R+HGI+ DDMS  L            +  NVFN +DFLL  G+RP+VE+ FMPE+ ASN S TV H+KG +SPP  +   +   S+F +ALV RYG  EV++W+FEVWNE
Sbjct:   61 WKTSVGSGHASLCLHTTWREHVLKAKQELGFTGIRFHGIFSDDMSVVLGPGDDDQKPYYYSFFNVFNCFDFLLHSGIRPVVEIGFMPELFASNASQTVFHWKGIVSPPKRYDLWDDLISSFGNALVQRYGIKEVSNWVFEVWNE 204          
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: A9VA66_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VA66_MONBE)

HSP 1 Score: 135 bits (341), Expect = 9.180e-35
Identity = 73/165 (44.24%), Postives = 95/165 (57.58%), Query Frame = 1
Query:    1 ALDIAVDVGKSTGELVRLWQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYLDGN---VNMVNVFNSYDFLLSLGVRPLVEMSFMPEMLASNTSLTVMH--------YKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            ++D+ VD+G++T  L   W+E +GSGHA +  R DWR     A+ D G +R R+HGI DDDMS  L+ N    N  NVF  YD+LLSL V+PLVE+SFMP    +       +        YKG + PP +F       + FV AL  RYG  EV+ W FEVWNE
Sbjct:   24 SMDVTVDLGQTT-PLAHYWKECVGSGHALLATRVDWRSHLVNASRDLGFRRVRFHGILDDDMSVVLNENKTDYNYYNVFQVYDYLLSLSVQPLVELSFMPRQFVTCPESGCQYAFNNPAGGYKGLVMPPDNFSDWYALVNNFVHALTDRYGREEVSQWHFEVWNE 187          
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: F0ZLY4_DICPU (Uncharacterized protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZLY4_DICPU)

HSP 1 Score: 128 bits (322), Expect = 1.250e-34
Identity = 61/141 (43.26%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   55 WQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYLDGN-----VNMVNVFNSYDFLLSLGVRPLVEMSFMPEMLASNTSLTVMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            W+  +GSGHA++ MRSDWR A   A    G++R R+HGI+DDD+S Y  G       +  +V   YD+++ +G+ P VE+SFMPE+LAS  + T+ HYKG I+PP ++ +       F++ +V RYG   V+ W FE+WNE
Sbjct:    3 WEGCVGSGHANLGMRSDWRAALLNAHEKLGLQRVRFHGIFDDDLSVYQQGPNGEAIYSWYDVDQVYDYIVEIGMAPYVELSFMPELLASGNA-TIFHYKGNITPPKNYTQWAELIQAFINHIVDRYGMDIVSQWQFEIWNE 142          
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: A0A0S4J5P1_BODSA (Glycoside hydrolase family 39, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4J5P1_BODSA)

HSP 1 Score: 127 bits (318), Expect = 6.090e-34
Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   55 WQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYL-DGNVNMVNVFNSYDFLLSLGVRPLVEMSFMPEMLA-----SNTSLT---VMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            W+E +GSGHA +  R+DW+    +A  D G KR R HGI+DDD+   L  G     NV   YDFLLS+GVRP+VE+SFMP +LA     +NT      VMHY G + PP +F   +       + LV RYG  EV  W FEVWNE
Sbjct:   42 WKESVGSGHALLGTRADWQAQLKQAVSDIGFKRVRMHGIFDDDIRVVLAPGQYEFYNVDIVYDFLLSVGVRPIVELSFMPGVLAGCWPWNNTGANCNYVMHYDGIVQPPTNFADWQDLCRALAAHLVERYGVEEVRQWHFEVWNE 186          
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: A0A8J8MK37_9FIRM (Beta-xylosidase n=1 Tax=Vallitalea pronyensis TaxID=1348613 RepID=A0A8J8MK37_9FIRM)

HSP 1 Score: 133 bits (334), Expect = 7.220e-34
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 1
Query:   55 WQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYL--DGNVNMVNVFNSYDFLLSLGVRPLVEMSFMPEMLASNTSLTVMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            W+  +GSGHA+M +R+DWRE  TR   + G +  R+HG+  +DMS Y   +G+ + VNV N +DFLLS+G++PLVE+ FMP  L S T   V HY+G I+PP D+ + + F +  V  L+ RYG  EV  W FEVWNE
Sbjct:   19 WEGCIGSGHAAMGLRADWREQLTRCKKELGFEYVRFHGLLCNDMSVYTKHEGS-SFVNVNNLFDFLLSIGMKPLVEIGFMPNDLGSGTE-EVFHYRGNITPPKDYNQWKVFITELVQNLINRYGLKEVQKWYFEVWNE 154          
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: UPI00047D8C7E (beta-xylosidase n=1 Tax=Caldanaerobius polysaccharolyticus TaxID=44256 RepID=UPI00047D8C7E)

HSP 1 Score: 132 bits (332), Expect = 1.380e-33
Identity = 66/154 (42.86%), Postives = 94/154 (61.04%), Query Frame = 1
Query:   16 VDVGKSTGELVRLWQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYL---DGNVN--MVNVFNSYDFLLSLGVRPLVEMSFMPEMLASNTSLTVMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            +D+   T   V  W+E +GSGHA++ +R DWR    +   + G KR R+HG+ +DDMS Y+   +G V+    N+ + +D+LL +G++P +E+SFMPE +AS  S TV HYKG I+PP D+ +           LV RYG  EV  W FEVWNE
Sbjct:    6 IDLNAPTTPFVHYWEECVGSGHAALALREDWRLHLKKCHDELGFKRVRFHGLLNDDMSVYIKDREGKVHYCFFNIDSIFDYLLKIGMKPFIELSFMPEDMASG-SKTVFHYKGNITPPKDYNEWGELIYRLTEHLVKRYGIEEVRKWFFEVWNE 158          
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: A0A7W1YX94_9BACT (Beta-xylosidase n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7W1YX94_9BACT)

HSP 1 Score: 131 bits (329), Expect = 3.900e-33
Identity = 65/156 (41.67%), Postives = 95/156 (60.90%), Query Frame = 1
Query:    7 DIAVDVGKSTGELVRLWQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYLD-GNVNMVNVFNS---YDFLLSLGVRPLVEMSFMPEMLASNTSLTVMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            +   ++ ++T  L   W+  +GSGHA + +R+DW+    R   + G +  R+HG++ DD+ T +D G   + + FN+   +DFLLS+G++P VE+SFMPE LAS    TV HY+  I+PP D++K  T    FV   V RYG  EV  W FEVWNE
Sbjct:    3 EFTCNLSETTTPLDHAWEHTVGSGHAPLALRADWQAQMRRCHDELGFRHVRFHGLFSDDVGTLIDHGGEPLYSFFNADRIFDFLLSIGMKPFVELSFMPEALASGHK-TVFHYRSNITPPKDYKKWATLVEKFVRHCVERYGLEEVAQWFFEVWNE 157          
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: Q27SS5_9EUKA (Beta xylosidase-like protein A (Fragment) n=2 Tax=Paratrimastix pyriformis TaxID=342808 RepID=Q27SS5_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 3.940e-33
Identity = 63/142 (44.37%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   55 WQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYLDGNVN------MVNVFNSYDFLLSLGVRPLVEMSFMPEMLASNTSLTVMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            ++  +GS HA M +R+DWRE   +A  + G K  R+HG++DDDMS  L    N      + NVF+ +DFL S+ +RP+VE+SFMPE LAS    T+ HYKG I+PP  + +   F   F+  L+ RYG   +  W FEVWNE
Sbjct:    5 YENCVGSCHALMALRADWREQMKKAHDELGFKMVRFHGLFDDDMSVLLSVTENGTLQLSLYNVFSVFDFLRSIDMRPIVELSFMPEALASGKD-TIFHYKGNITPPKSYAQWNDFIRQFMQGLIARYG---IRQWFFEVWNE 142          
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Match: UPI00142B7A10 (glycosyl hydrolase n=1 Tax=Candidatus Methylobacter favarea TaxID=2707345 RepID=UPI00142B7A10)

HSP 1 Score: 130 bits (327), Expect = 7.700e-33
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    1 ALDIAVDVGKSTGELVRLWQEGMGSGHASMTMRSDWREAATRAAMDAGIKRFRWHGIWDDDMSTYLDGNVNMV-NVFNS---YDFLLSLGVRPLVEMSFMPEMLASNTSLTVMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFEVWNE 462
            +++ + D+G +   L  +W+  +GS  A + +R+DWRE   +A  + G +  R+HGI DDDM T       ++ + FNS   +DFLLS+G++P VE+SFMP  LAS  S TV  YKG ++PP D+   +T     VS  V RYG  EV  W FEVWNE
Sbjct:    2 SVNFSCDLGAAAAALPHVWEHTVGSSRALLALRADWREQLKKAHEELGFRHVRFHGILDDDMGTLTCQQEKLIYSFFNSDQIFDFLLSIGMQPFVELSFMPSTLASG-STTVFKYKGNVTPPKDYAHWQTLIKKLVSHWVDRYGLEEVRQWFFEVWNE 158          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74898.17703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H5H5_ACACA4.940e-3644.38Glycoside hydrolase family protein n=2 Tax=Acantha... [more]
A0A6A5CHU4_NAEFO6.070e-3646.53Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A9VA66_MONBE9.180e-3544.24Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
F0ZLY4_DICPU1.250e-3443.26Uncharacterized protein (Fragment) n=1 Tax=Dictyos... [more]
A0A0S4J5P1_BODSA6.090e-3446.90Glycoside hydrolase family 39, putative n=1 Tax=Bo... [more]
A0A8J8MK37_9FIRM7.220e-3447.83Beta-xylosidase n=1 Tax=Vallitalea pronyensis TaxI... [more]
UPI00047D8C7E1.380e-3342.86beta-xylosidase n=1 Tax=Caldanaerobius polysacchar... [more]
A0A7W1YX94_9BACT3.900e-3341.67Beta-xylosidase n=1 Tax=Chthoniobacterales bacteri... [more]
Q27SS5_9EUKA3.940e-3344.37Beta xylosidase-like protein A (Fragment) n=2 Tax=... [more]
UPI00142B7A107.700e-3342.41glycosyl hydrolase n=1 Tax=Candidatus Methylobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74898contigM-pyrifera_M_contig74898:600..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score132.9
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog935948.KE386495_gene1868
Preferred namexynB
KEGG rclassRC00467
KEGG koko:K01198
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl hydrolases family 39
EggNOG OGs1TQGI@1239,2490Q@186801,42FZX@68295,COG3664@1,COG3664@2
EC3.2.1.37
COG Functional cat.G
CAZyGH43
Best tax levelThermoanaerobacterales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.1831439-CDS-M-pyrifera_M_contig74898:599..10611622816647.1831439-CDS-M-pyrifera_M_contig74898:599..1061Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74898 600..1061 +
1692278097.0352135-CDS-M-pyrifera_M_contig74898:599..10611692278097.0352135-CDS-M-pyrifera_M_contig74898:599..1061Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74898 600..1061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74898.17703.1prot_M-pyrifera_M_contig74898.17703.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74898 600..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74898.17703.1

>prot_M-pyrifera_M_contig74898.17703.1 ID=prot_M-pyrifera_M_contig74898.17703.1|Name=mRNA_M-pyrifera_M_contig74898.17703.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
ALDIAVDVGKSTGELVRLWQEGMGSGHASMTMRSDWREAATRAAMDAGIK
RFRWHGIWDDDMSTYLDGNVNMVNVFNSYDFLLSLGVRPLVEMSFMPEML
ASNTSLTVMHYKGGISPPLDFQKLETFASTFVSALVTRYGESEVNDWIFE
VWNE
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mRNA from alignment at M-pyrifera_M_contig74898:600..1061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74898.17703.1 ID=mRNA_M-pyrifera_M_contig74898.17703.1|Name=mRNA_M-pyrifera_M_contig74898.17703.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig74898:600..1061+ (Macrocystis pyrifera P11B4 male)
GCTCTGGATATTGCGGTGGATGTTGGAAAAAGTACTGGTGAATTGGTTAG GTTGTGGCAGGAAGGCATGGGGAGCGGCCACGCATCCATGACCATGCGAA GTGACTGGAGAGAGGCTGCAACGAGGGCTGCAATGGATGCAGGGATAAAA AGGTTTCGGTGGCATGGAATTTGGGATGATGATATGTCCACATACCTTGA CGGAAACGTCAATATGGTCAATGTTTTCAATTCCTACGATTTTCTCTTGT CCTTGGGTGTGCGTCCACTAGTAGAGATGTCTTTTATGCCTGAGATGCTG GCATCAAACACATCTCTTACTGTGATGCACTACAAAGGTGGAATTTCACC ACCACTCGATTTCCAAAAGTTGGAGACATTTGCGTCCACGTTTGTATCCG CCTTGGTGACGCGGTATGGGGAATCTGAGGTGAATGATTGGATCTTTGAA GTTTGGAATGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74898:600..1061+

>mRNA_M-pyrifera_M_contig74898.17703.1 ID=mRNA_M-pyrifera_M_contig74898.17703.1|Name=mRNA_M-pyrifera_M_contig74898.17703.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig74898:600..1061+ (Macrocystis pyrifera P11B4 male)
GCTCTGGATATTGCGGTGGATGTTGGAAAAAGTACTGGTGAATTGGTTAG
GTTGTGGCAGGAAGGCATGGGGAGCGGCCACGCATCCATGACCATGCGAA
GTGACTGGAGAGAGGCTGCAACGAGGGCTGCAATGGATGCAGGGATAAAA
AGGTTTCGGTGGCATGGAATTTGGGATGATGATATGTCCACATACCTTGA
CGGAAACGTCAATATGGTCAATGTTTTCAATTCCTACGATTTTCTCTTGT
CCTTGGGTGTGCGTCCACTAGTAGAGATGTCTTTTATGCCTGAGATGCTG
GCATCAAACACATCTCTTACTGTGATGCACTACAAAGGTGGAATTTCACC
ACCACTCGATTTCCAAAAGTTGGAGACATTTGCGTCCACGTTTGTATCCG
CCTTGGTGACGCGGTATGGGGAATCTGAGGTGAATGATTGGATCTTTGAA
GTTTGGAATGAGGCTCTGGATATTGCGGTGGATGTTGGAAAAAGTACTGG
TGAATTGGTTAGGTTGTGGCAGGAAGGCATGGGGAGCGGCCACGCATCCA
TGACCATGCGAAGTGACTGGAGAGAGGCTGCAACGAGGGCTGCAATGGAT
GCAGGGATAAAAAGGTTTCGGTGGCATGGAATTTGGGATGATGATATGTC
CACATACCTTGACGGAAACGTCAATATGGTCAATGTTTTCAATTCCTACG
ATTTTCTCTTGTCCTTGGGTGTGCGTCCACTAGTAGAGATGTCTTTTATG
CCTGAGATGCTGGCATCAAACACATCTCTTACTGTGATGCACTACAAAGG
TGGAATTTCACCACCACTCGATTTCCAAAAGTTGGAGACATTTGCGTCCA
CGTTTGTATCCGCCTTGGTGACGCGGTATGGGGAATCTGAGGTGAATGAT
TGGATCTTTGAAGTTTGGAATGAG
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