mRNA_M-pyrifera_M_contig74890.17700.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74890.17700.1
Unique NamemRNA_M-pyrifera_M_contig74890.17700.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74890.17700.1 vs. uniprot
Match: A0A5A8E4B5_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E4B5_CAFRO)

HSP 1 Score: 90.1 bits (222), Expect = 9.340e-17
Identity = 66/179 (36.87%), Postives = 88/179 (49.16%), Query Frame = 1 
Query:    1 CADCPMGAVCGGLGAANVTGVEGYWRVPWSKDGLGFALCDSDGACIGHSGRIVATSLSSSPTVYTTNTTSSNSTMESTVVPLWQQEDNDDRDVTLSSIS-------------LIPSYHETCNVGHRGVLCSACAVGYFPGVGGSCTACGNRSWIAGRFFLLC---VAILVAFSIIIVRA 489
            C  C   AVCGGL + NVT   G+WRVPWS  GLGFA CD   AC G    + A S S+      TN ++  +   S VV   +      R +  ++++             L P+  E C +G  GVLC ACA GY   VGG C ACG  +  AG   LL    +A L+  ++ ++RA
Sbjct: 2023 CQPCLAQAVCGGLPSRNVTARPGWWRVPWSSVGLGFAACDPAEACRGVVAPLPAASASA------TNASAGGAGAVSAVVASAELPTGSRRLLVQTALAFQQSGESGSSSGRLDPARMEGCGLGRTGVLCHACASGYHVDVGGGCAACGEGN--AGALALLLGVGLAALLVVAVFVLRA 2193
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BLAST of mRNA_M-pyrifera_M_contig74890.17700.1 vs. uniprot
Match: A0A5A8CY79_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CY79_CAFRO)

HSP 1 Score: 56.6 bits (135), Expect = 1.860e-5
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:  529 IMKIIFTHLQTVTIVGGVQLRWPQAARGFFNTVDAGSSFATSGLALECLMGD 684
            ++K++F HLQ ++I+ GV+L WP A    F      SSF+T+GL +EC +G+
Sbjct: 2418 VLKLLFNHLQLLSIISGVRLAWPPAVLSIFEAGQVTSSFSTAGLGVECFLGE 2469
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74890.17700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8E4B5_CAFRO9.340e-1736.87Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8CY79_CAFRO1.860e-542.31Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74890contigM-pyrifera_M_contig74890:178..942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size765
Cds size750
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.0559444-CDS-M-pyrifera_M_contig74890:177..9271622816647.0559444-CDS-M-pyrifera_M_contig74890:177..927Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74890 178..927 -
1692278096.9785118-CDS-M-pyrifera_M_contig74890:177..9271692278096.9785118-CDS-M-pyrifera_M_contig74890:177..927Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74890 178..927 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.0706666-UTR-M-pyrifera_M_contig74890:927..9421622816647.0706666-UTR-M-pyrifera_M_contig74890:927..942Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74890 928..942 -
1692278096.990067-UTR-M-pyrifera_M_contig74890:927..9421692278096.990067-UTR-M-pyrifera_M_contig74890:927..942Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74890 928..942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74890.17700.1prot_M-pyrifera_M_contig74890.17700.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74890 178..927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74890.17700.1

>prot_M-pyrifera_M_contig74890.17700.1 ID=prot_M-pyrifera_M_contig74890.17700.1|Name=mRNA_M-pyrifera_M_contig74890.17700.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=250bp
MGAVCGGLGAANVTGVEGYWRVPWSKDGLGFALCDSDGACIGHSGRIVAT
SLSSSPTVYTTNTTSSNSTMESTVVPLWQQEDNDDRDVTLSSISLIPSYH
ETCNVGHRGVLCSACAVGYFPGVGGSCTACGNRSWIAGRFFLLCVAILVA
FSIIIVRAYQTRASTSSKEVQIMKIIFTHLQTVTIVGGVQLRWPQAARGF
FNTVDAGSSFATSGLALECLMGDASSNPFLRTILFLVMPLFLVAYILLFW
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mRNA from alignment at M-pyrifera_M_contig74890:178..942-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74890.17700.1 ID=mRNA_M-pyrifera_M_contig74890.17700.1|Name=mRNA_M-pyrifera_M_contig74890.17700.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=765bp|location=Sequence derived from alignment at M-pyrifera_M_contig74890:178..942- (Macrocystis pyrifera P11B4 male)
TGCGCAGATTGTCCCATGGGAGCTGTGTGTGGAGGACTGGGAGCTGCGAA
TGTGACAGGGGTTGAAGGCTATTGGAGAGTTCCATGGTCGAAAGATGGGT
TGGGGTTTGCACTTTGCGATTCGGATGGTGCTTGCATTGGTCATAGTGGC
CGCATCGTTGCAACTTCTCTTTCATCATCCCCTACTGTGTACACTACGAA
TACCACTTCATCAAACTCAACGATGGAAAGCACTGTTGTGCCCTTGTGGC
AACAGGAAGACAATGACGATCGAGATGTGACGCTGTCCTCAATCTCTCTT
ATCCCATCATATCACGAAACTTGCAACGTTGGCCATCGAGGAGTACTTTG
CTCTGCTTGTGCTGTTGGCTACTTTCCTGGTGTAGGAGGGAGCTGCACTG
CATGTGGAAATCGTAGTTGGATTGCTGGTAGATTCTTTCTTCTGTGCGTT
GCGATCCTTGTTGCCTTTTCCATAATCATTGTCCGTGCTTACCAAACAAG
AGCTTCCACATCCTCCAAAGAAGTACAAATCATGAAGATCATTTTCACAC
ATCTCCAAACTGTGACAATTGTGGGAGGAGTGCAGTTGAGGTGGCCCCAA
GCAGCTCGAGGATTTTTCAATACTGTGGATGCGGGATCATCTTTCGCAAC
ATCTGGTCTCGCTCTAGAGTGTCTGATGGGTGATGCTTCCTCCAATCCAT
TTCTCCGCACGATCCTCTTCCTTGTCATGCCGCTCTTTCTCGTCGCCTAT
ATTCTCTTATTTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74890:178..942-

>mRNA_M-pyrifera_M_contig74890.17700.1 ID=mRNA_M-pyrifera_M_contig74890.17700.1|Name=mRNA_M-pyrifera_M_contig74890.17700.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1500bp|location=Sequence derived from alignment at M-pyrifera_M_contig74890:178..942- (Macrocystis pyrifera P11B4 male)
ATGGGAGCTGTGTGTGGAGGACTGGGAGCTGCGAATGTGACAGGGGTTGA
AGGCTATTGGAGAGTTCCATGGTCGAAAGATGGGTTGGGGTTTGCACTTT
GCGATTCGGATGGTGCTTGCATTGGTCATAGTGGCCGCATCGTTGCAACT
TCTCTTTCATCATCCCCTACTGTGTACACTACGAATACCACTTCATCAAA
CTCAACGATGGAAAGCACTGTTGTGCCCTTGTGGCAACAGGAAGACAATG
ACGATCGAGATGTGACGCTGTCCTCAATCTCTCTTATCCCATCATATCAC
GAAACTTGCAACGTTGGCCATCGAGGAGTACTTTGCTCTGCTTGTGCTGT
TGGCTACTTTCCTGGTGTAGGAGGGAGCTGCACTGCATGTGGAAATCGTA
GTTGGATTGCTGGTAGATTCTTTCTTCTGTGCGTTGCGATCCTTGTTGCC
TTTTCCATAATCATTGTCCGTGCTTACCAAACAAGAGCTTCCACATCCTC
CAAAGAAGTACAAATCATGAAGATCATTTTCACACATCTCCAAACTGTGA
CAATTGTGGGAGGAGTGCAGTTGAGGTGGCCCCAAGCAGCTCGAGGATTT
TTCAATACTGTGGATGCGGGATCATCTTTCGCAACATCTGGTCTCGCTCT
AGAGTGTCTGATGGGTGATGCTTCCTCCAATCCATTTCTCCGCACGATCC
TCTTCCTTGTCATGCCGCTCTTTCTCGTCGCCTATATTCTCTTATTTTGG
ATGGGAGCTGTGTGTGGAGGACTGGGAGCTGCGAATGTGACAGGGGTTGA
AGGCTATTGGAGAGTTCCATGGTCGAAAGATGGGTTGGGGTTTGCACTTT
GCGATTCGGATGGTGCTTGCATTGGTCATAGTGGCCGCATCGTTGCAACT
TCTCTTTCATCATCCCCTACTGTGTACACTACGAATACCACTTCATCAAA
CTCAACGATGGAAAGCACTGTTGTGCCCTTGTGGCAACAGGAAGACAATG
ACGATCGAGATGTGACGCTGTCCTCAATCTCTCTTATCCCATCATATCAC
GAAACTTGCAACGTTGGCCATCGAGGAGTACTTTGCTCTGCTTGTGCTGT
TGGCTACTTTCCTGGTGTAGGAGGGAGCTGCACTGCATGTGGAAATCGTA
GTTGGATTGCTGGTAGATTCTTTCTTCTGTGCGTTGCGATCCTTGTTGCC
TTTTCCATAATCATTGTCCGTGCTTACCAAACAAGAGCTTCCACATCCTC
CAAAGAAGTACAAATCATGAAGATCATTTTCACACATCTCCAAACTGTGA
CAATTGTGGGAGGAGTGCAGTTGAGGTGGCCCCAAGCAGCTCGAGGATTT
TTCAATACTGTGGATGCGGGATCATCTTTCGCAACATCTGGTCTCGCTCT
AGAGTGTCTGATGGGTGATGCTTCCTCCAATCCATTTCTCCGCACGATCC
TCTTCCTTGTCATGCCGCTCTTTCTCGTCGCCTATATTCTCTTATTTTGG
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