mRNA_M-pyrifera_M_contig74889.17699.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74889.17699.1
Unique NamemRNA_M-pyrifera_M_contig74889.17699.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: A0A2E7CXL8_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7CXL8_9PLAN)

HSP 1 Score: 126 bits (317), Expect = 2.330e-32
Identity = 74/180 (41.11%), Postives = 105/180 (58.33%), Query Frame = 1
Query:    1 NVRATTAKVENNRREPRAEEAVDRKIVYEANVELEVRDFSATEVALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            N +A  +K E   +     +A  R+I+Y A++ L V DF ATE  LP+L+ + GGY+SET+I RN G      W AR+P  + + FL  ++ LG  +   Q A DVT+ FVDLEARI +K++LE RIVELLK  + +I ++LE+E                LR L N++ L TV I+ RE
Sbjct:   46 NEKAGNSKPEPTDKNANTADASKRRIIYRADLTLVVNDFEATERDLPKLISDMGGYVSETSIGRNRGVSRQATWVARVPVPKYERFLEDLTDLGVAQNFHQKADDVTSQFVDLEARIANKKQLEARIVELLKNHSGKINDLLEIERELARIREEIERMQGQLRLLDNQSSLATVSIAVRE 225          
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: UPI00141FD167 (DUF4349 domain-containing protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141FD167)

HSP 1 Score: 124 bits (310), Expect = 2.590e-31
Identity = 66/161 (40.99%), Postives = 96/161 (59.63%), Query Frame = 1
Query:   58 EAVDRKIVYEANVELEVRDFSATEVALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            E+ +RKI+YEA + L V DF A   ++ +LVE + GYL ET++DR  G Y +GRW ARIP  +    L  ++ +G  +R  Q+A DVT +++D+EARIK+K+ELE RI++LL     ++ +V+  E                LRYL NR   +TV I  RE
Sbjct:   61 ESAERKIIYEARISLVVDDFEAASKSIQKLVERYEGYLGETSVDRTQGAYRTGRWVARIPVKKFSECLDELAEIGVAERQGQTAQDVTMEYLDVEARIKTKKELEQRILDLLADRDGKLQDVIAAEQELARVRSEIESMEGRLRYLQNRTSFSTVTIDVRE 221          
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: A0A518AUQ2_9BACT (Uncharacterized protein n=2 Tax=Aeoliella mucimassa TaxID=2527972 RepID=A0A518AUQ2_9BACT)

HSP 1 Score: 123 bits (308), Expect = 5.220e-31
Identity = 66/160 (41.25%), Postives = 99/160 (61.88%), Query Frame = 1
Query:   61 AVDRKIVYEANVELEVRDFSATEVALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            A +RK++Y A V++ V +F   E A+  LV++HGG+++ + ++ N G   SG W  RIP +  ++FL +   +G  + L +   DVT ++VDLEARI+SKQ+LE R++ELL  +  EI +V+EVE                LRYL +RAELTTV +S RE
Sbjct:   70 AENRKLIYTATVDIVVDNFDQMESAVSVLVKKHGGFIASSNVNLNQGDRRSGTWVVRIPVASFESFLQSTGDMGVPENLKRDTQDVTEEYVDLEARIRSKQKLEQRVLELLDSNKGEIKDVIEVERELSRVRTEIEQMEGRLRYLTDRAELTTVTLSIRE 229          
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: A0A517P839_9PLAN (Uncharacterized protein n=1 Tax=Alienimonas californiensis TaxID=2527989 RepID=A0A517P839_9PLAN)

HSP 1 Score: 122 bits (306), Expect = 1.220e-30
Identity = 62/156 (39.74%), Postives = 97/156 (62.18%), Query Frame = 1
Query:   73 KIVYEANVELEVRDFSATEVALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            KI+Y A++ + V DF+A E A+P LVE+ GGY++ + +DR++G  L G W  R+P    + FL+   GLG  +   ++A DVTA+FVD+EAR+  ++ LETR++ELL +   E+ +VLE+E                LRYL+N+   +T+ +S RE
Sbjct:   82 KIIYTADLTVVVDDFAAAETAIPALVEKFGGYVAGSNVDRSTGDRLRGTWTVRVPVERYEAFLSGAGGLGVVEERDETARDVTAEFVDVEARLAGRRALETRLLELLAERPGELKDVLEIERELARVREEIETAEGRLRYLSNQTAYSTITLSVRE 237          
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: A0A2E1KK66_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E1KK66_9PLAN)

HSP 1 Score: 120 bits (301), Expect = 6.260e-30
Identity = 68/167 (40.72%), Postives = 103/167 (61.68%), Query Frame = 1
Query:   46 PRAEEAVDRKIVYEANVELEVRDFSATEV--ALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            P A    +R+++Y A V L V DF+A E    L +L+E+HGG+ ++ +IDRN G+  SG W+ARIP    + FL A++ LG  +   ++  DVTA +VDL+ARI++K+ LE RI++LL++SA +I E++EVE                 R L +R ++TTV I  RE
Sbjct:   72 PDAALETERQLIYVAEVRLVVEDFAALEGKNGLSQLIEKHGGHTADLSIDRNQGRARSGHWKARIPVKNYRIFLGALTELGVPEHFRETTEDVTAQYVDLDARIRNKKRLEERILQLLERSAGKINELIEVERELGRVRGEIERMDSMFRSLQSRIKMTTVTIDVRE 238          
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: UPI001488A2B4 (DUF4349 domain-containing protein n=1 Tax=Alienimonas chondri TaxID=2681879 RepID=UPI001488A2B4)

HSP 1 Score: 115 bits (287), Expect = 1.070e-27
Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   73 KIVYEANVELEVRDFSATEVALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            KI+Y A++ + V +F   E A+P LV++ GGY++ + +DR+ G  L G W  RIP +    FLA   GLG  +   ++A DVTA+FVD EAR+  ++ LETR++ELL +   E+ +VLE+E                LRYL+N+   +T+ +  RE
Sbjct:   90 KIIYTADLTVVVENFEGVEQAIPALVDKFGGYVAASDVDRSMGDRLRGTWTVRIPVASYDAFLAGAGGLGVVEEKGETARDVTAEFVDTEARLAGRRALETRLLELLAERPGELKDVLELERELARVREEIETAEGRLRYLSNQTAYSTITLQVRE 245          
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: A0A2G1W150_9BACT (Uncharacterized protein n=2 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W150_9BACT)

HSP 1 Score: 114 bits (284), Expect = 2.030e-27
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   67 DRKIVYEANVELEVRDFSATEVALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            +R+IVY  ++ L V++++  E  LP LV++HGG++S +  +R      SG W ARIP +   +FL  V+GLG  +  ++ A DVTA+FVD+EARI++ ++LE RI+ +L++   ++ +VLE+E                LR LA+R+ L T+ I  RE
Sbjct:   79 NRRIVYNTHLSLVVKEYAIFESELPDLVDQHGGFISNSETNRRYNNRQSGLWVARIPVANYVDFLQGVTGLGFAESRTEDAQDVTAEFVDVEARIRNNKKLEERIITMLEERTGKLSDVLEIERELSRVREEVERMEGRLRVLADRSSLATITIKCRE 236          
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: Q7UU89_RHOBA (Uncharacterized protein n=5 Tax=Rhodopirellula baltica TaxID=265606 RepID=Q7UU89_RHOBA)

HSP 1 Score: 112 bits (280), Expect = 1.830e-26
Identity = 60/158 (37.97%), Postives = 96/158 (60.76%), Query Frame = 1
Query:   67 DRKIVYEANVELEVRDFSATEVALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            +R+IVY  ++ L V++++  E  LP LV++HGG++S +  +R      SG W ARIP +   +FL  V+GLG  +  ++ A DVTA+FVD+EARI++ ++LE RI+ +L +   ++ EVLE+E                LR L++R+ L T+ I  RE
Sbjct:  128 NRRIVYNTHLSLVVKEYATFESKLPDLVDQHGGFISNSETNRRYNNQQSGVWVARIPVANYLDFLQGVTGLGFAESRTEDADDVTAEFVDVEARIRNNKKLEERIITMLDERTGKLSEVLEIERELSRVREEIERMEGRLRVLSDRSALATITIKCRE 285          
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: A0A0J1B4U8_RHOIS (Uncharacterized protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=A0A0J1B4U8_RHOIS)

HSP 1 Score: 110 bits (276), Expect = 2.970e-26
Identity = 58/158 (36.71%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   67 DRKIVYEANVELEVRDFSATEVALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            +R+IVY  ++ L V++++  E  LP LV++HGG++S +  +R      SG W ARIP +    FL  V+GLG  +  ++ A DVT +FVD+EARI++ ++LE RI+ +L++   ++ +VLE+E                LR L++R+ L T+ I  RE
Sbjct:   78 NRRIVYNTHLSLVVKEYATFESKLPALVDQHGGFISNSETNRRYNNRQSGEWVARIPVANYVAFLRGVTGLGFAESRTEDAQDVTEEFVDVEARIRNNKKLEERIITMLEERTGKLSDVLEIERELSRVREEIERMEGRLRVLSDRSALATITIQCRE 235          
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Match: UPI0019CE573D (DUF4349 domain-containing protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019CE573D)

HSP 1 Score: 108 bits (270), Expect = 2.170e-25
Identity = 59/165 (35.76%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   46 PRAEEAVDRKIVYEANVELEVRDFSATEVALPRLVEEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLSQSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGXXXXXXXXXXXXXXXLRYLANRAELTTVDISARE 540
            P A++   RK++Y+ +++L V+DF+  E  L  ++E+   ++ E   DR SG     +W  R+P+  +Q FL   +GLG T+    SA DVT +FVDL AR KSKQ+LETR++EL+   A +I ++  +E                +RYL++R  ++T+ I+ RE
Sbjct:   52 PAADKQGRRKVIYKGSLDLVVKDFAQAEQGLRGIIEKSQAFIDELTEDRRSGSQRYAKWVVRVPAEGVQKFLDQTAGLGLTQYRGLSADDVTEEFVDLAARTKSKQQLETRLLELVAAKAGDIRDLASLETELARVREEIERMEGRVRYLSDRVAMSTITITMRE 216          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74889.17699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7CXL8_9PLAN2.330e-3241.11Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI00141FD1672.590e-3140.99DUF4349 domain-containing protein n=1 Tax=Rubinisp... [more]
A0A518AUQ2_9BACT5.220e-3141.25Uncharacterized protein n=2 Tax=Aeoliella mucimass... [more]
A0A517P839_9PLAN1.220e-3039.74Uncharacterized protein n=1 Tax=Alienimonas califo... [more]
A0A2E1KK66_9PLAN6.260e-3040.72Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI001488A2B41.070e-2738.46DUF4349 domain-containing protein n=1 Tax=Alienimo... [more]
A0A2G1W150_9BACT2.030e-2737.97Uncharacterized protein n=2 Tax=Rhodopirellula bah... [more]
Q7UU89_RHOBA1.830e-2637.97Uncharacterized protein n=5 Tax=Rhodopirellula bal... [more]
A0A0J1B4U8_RHOIS2.970e-2636.71Uncharacterized protein n=2 Tax=Rhodopirellula Tax... [more]
UPI0019CE573D2.170e-2535.76DUF4349 domain-containing protein n=1 Tax=Pirellul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74889contigM-pyrifera_M_contig74889:526..1065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score114.8
Seed ortholog evalue4.3e-23
Seed eggNOG ortholog243090.RB3435
KEGG koko:K13582
KEGG Pathwayko04112,map04112
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4349)
EggNOG OGs2J030@203682,COG3206@1,COG3206@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.0252836-CDS-M-pyrifera_M_contig74889:525..10651622816647.0252836-CDS-M-pyrifera_M_contig74889:525..1065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74889 526..1065 +
1692278096.965504-CDS-M-pyrifera_M_contig74889:525..10651692278096.965504-CDS-M-pyrifera_M_contig74889:525..1065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74889 526..1065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74889.17699.1prot_M-pyrifera_M_contig74889.17699.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74889 526..1065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74889.17699.1

>prot_M-pyrifera_M_contig74889.17699.1 ID=prot_M-pyrifera_M_contig74889.17699.1|Name=mRNA_M-pyrifera_M_contig74889.17699.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
NVRATTAKVENNRREPRAEEAVDRKIVYEANVELEVRDFSATEVALPRLV
EEHGGYLSETAIDRNSGKYLSGRWQARIPSSELQNFLAAVSGLGETKRLS
QSALDVTADFVDLEARIKSKQELETRIVELLKKSAAEIGEVLEVEGELAR
VRGEIEQMQGKLRYLANRAELTTVDISARE
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mRNA from alignment at M-pyrifera_M_contig74889:526..1065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74889.17699.1 ID=mRNA_M-pyrifera_M_contig74889.17699.1|Name=mRNA_M-pyrifera_M_contig74889.17699.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig74889:526..1065+ (Macrocystis pyrifera P11B4 male)
AACGTCAGAGCCACAACAGCGAAGGTAGAAAATAACCGTCGCGAACCACG AGCCGAGGAAGCGGTTGACCGAAAGATTGTGTACGAGGCCAACGTGGAAT TGGAGGTCCGTGATTTTTCTGCAACCGAAGTCGCCCTGCCGCGGCTTGTC GAAGAACATGGCGGTTATCTTTCCGAAACCGCCATCGACCGCAACTCGGG CAAGTATCTTTCCGGACGTTGGCAGGCCCGTATCCCGAGTTCTGAGTTGC AGAACTTCTTGGCCGCCGTGTCAGGCCTGGGCGAAACCAAGCGGCTGAGC CAATCGGCCCTCGACGTAACCGCCGACTTTGTTGATCTGGAAGCACGCAT TAAGAGCAAACAAGAGCTGGAAACGAGAATCGTCGAGCTATTGAAAAAGT CTGCCGCTGAGATCGGCGAGGTACTCGAAGTTGAAGGCGAGTTAGCCCGG GTGCGAGGTGAAATCGAGCAGATGCAAGGGAAGCTCCGCTACCTGGCGAA TCGTGCCGAGCTGACGACCGTCGATATTTCTGCCCGTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74889:526..1065+

>mRNA_M-pyrifera_M_contig74889.17699.1 ID=mRNA_M-pyrifera_M_contig74889.17699.1|Name=mRNA_M-pyrifera_M_contig74889.17699.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig74889:526..1065+ (Macrocystis pyrifera P11B4 male)
AACGTCAGAGCCACAACAGCGAAGGTAGAAAATAACCGTCGCGAACCACG
AGCCGAGGAAGCGGTTGACCGAAAGATTGTGTACGAGGCCAACGTGGAAT
TGGAGGTCCGTGATTTTTCTGCAACCGAAGTCGCCCTGCCGCGGCTTGTC
GAAGAACATGGCGGTTATCTTTCCGAAACCGCCATCGACCGCAACTCGGG
CAAGTATCTTTCCGGACGTTGGCAGGCCCGTATCCCGAGTTCTGAGTTGC
AGAACTTCTTGGCCGCCGTGTCAGGCCTGGGCGAAACCAAGCGGCTGAGC
CAATCGGCCCTCGACGTAACCGCCGACTTTGTTGATCTGGAAGCACGCAT
TAAGAGCAAACAAGAGCTGGAAACGAGAATCGTCGAGCTATTGAAAAAGT
CTGCCGCTGAGATCGGCGAGGTACTCGAAGTTGAAGGCGAGTTAGCCCGG
GTGCGAGGTGAAATCGAGCAGATGCAAGGGAAGCTCCGCTACCTGGCGAA
TCGTGCCGAGCTGACGACCGTCGATATTTCTGCCCGTGAAAACGTCAGAG
CCACAACAGCGAAGGTAGAAAATAACCGTCGCGAACCACGAGCCGAGGAA
GCGGTTGACCGAAAGATTGTGTACGAGGCCAACGTGGAATTGGAGGTCCG
TGATTTTTCTGCAACCGAAGTCGCCCTGCCGCGGCTTGTCGAAGAACATG
GCGGTTATCTTTCCGAAACCGCCATCGACCGCAACTCGGGCAAGTATCTT
TCCGGACGTTGGCAGGCCCGTATCCCGAGTTCTGAGTTGCAGAACTTCTT
GGCCGCCGTGTCAGGCCTGGGCGAAACCAAGCGGCTGAGCCAATCGGCCC
TCGACGTAACCGCCGACTTTGTTGATCTGGAAGCACGCATTAAGAGCAAA
CAAGAGCTGGAAACGAGAATCGTCGAGCTATTGAAAAAGTCTGCCGCTGA
GATCGGCGAGGTACTCGAAGTTGAAGGCGAGTTAGCCCGGGTGCGAGGTG
AAATCGAGCAGATGCAAGGGAAGCTCCGCTACCTGGCGAATCGTGCCGAG
CTGACGACCGTCGATATTTCTGCCCGTGAA
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