mRNA_M-pyrifera_M_contig74852.17696.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74852.17696.1
Unique NamemRNA_M-pyrifera_M_contig74852.17696.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: A0A5A8CJG2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CJG2_CAFRO)

HSP 1 Score: 122 bits (305), Expect = 7.900e-34
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 RIAPAPLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVLVGRSSARESRIAHLESLTREWNDVFGVP 273
            R+AP P+SSG+S+R+LPE + VDIV+CCQ+YE KCAG+Y++ S  AR LFDLSRD+QDL + LV R   R+ R+ HLE +T+EW  VF  P
Sbjct:   34 RVAPFPISSGVSVRRLPEAKLVDIVRCCQHYESKCAGKYDKGSIGARLLFDLSRDIQDLSQSLVQRDDDRDDRVRHLERVTKEWTSVFENP 124          
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: A0A5A8DYU9_CAFRO (Abhydrolase_3 domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DYU9_CAFRO)

HSP 1 Score: 122 bits (305), Expect = 1.600e-31
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 RIAPAPLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVLVGRSSARESRIAHLESLTREWNDVFGVP 273
            R+AP P+SSG+S+R+LPE + VDIV+CCQ+YE KCAG+Y++ S  AR LFDLSRD+QDL + LV R   R+ R+ HLE +T+EW  VF  P
Sbjct:  252 RVAPFPISSGVSVRRLPEAKLVDIVRCCQHYESKCAGKYDKGSIGARLLFDLSRDIQDLSQSLVQRDDDRDDRVRHLERVTKEWTSVFENP 342          
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: A0A5A8DDF6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDF6_CAFRO)

HSP 1 Score: 107 bits (266), Expect = 1.670e-27
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    1 RIAPAPLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVLVGRSSARESRIAHLE 234
            R+AP P+SSG+S+R+LPE + VDIV+CCQ+YE KCAG+Y++ S  AR LFDLSRD+QDL + LV R   R+ R+ HLE
Sbjct:   34 RVAPFPISSGVSVRRLPEAKLVDIVRCCQHYESKCAGKYDKGSIGARLLFDLSRDIQDLSQSLVQRDDDRDDRVRHLE 111          
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.290e-18
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 RIAPAPLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVLVGRSSARESRIAHLESLTREWNDVFG 267
            RI PA +SSG+S+R LP  +  D+ K CQ+YEEKC+G Y   S AAR+LF LSR+VQ +   L    S++       E L +EWN+ FG
Sbjct:   12 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNLQAEQLLKEWNESFG 100          
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: D7FTA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.190e-18
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 RIAPAPLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVLVGRSSARESRIAHLESLTREWNDVFG 267
            RI PA +SSG+S+R LP  +  D+ K CQ+YEEKC+G Y   S AAR+LF LSR+VQ +   L    S++       E L  EWN+ FG
Sbjct:   61 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQDRSSQTLGNLQAEQLLEEWNESFG 149          
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: A0A0L0D731_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D731_THETB)

HSP 1 Score: 85.1 bits (209), Expect = 2.650e-17
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 RIAPAPLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVLVGRSSARESRIAHLESLTREWNDVFG 267
            R+AP P+SSGIS R+LP    +++ + C +YE K AG Y R S A R+++D++++V+ + R L     A      HLE +  EW+DVFG
Sbjct:   12 RVAPEPVSSGISFRKLPRASLIELGRVCDHYEAKGAGTYGRGSKATRYVYDMAKEVRQIIRGLEEEERAASLHTQHLERIVGEWHDVFG 100          
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: A0A836CIS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.890e-17
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 RIAPAPLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVLVGRSSARESRIAHLES 237
            R+ P  +SSG+S+R LP+  F  +   CQ+YEEKC+G+Y   S AAR++FDLSR+VQ     L  ++  RE+R+A L S
Sbjct:   46 RVGPPGVSSGVSLRHLPDTTFKAVAAICQHYEEKCSGKYASDSAAARYVFDLSREVQSQLAALEAQAQDREARVASLSS 124          
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: A0A8J6E1N9_9EUKA (Uncharacterized protein n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6E1N9_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 7.120e-16
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 RIAPAPLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVLVGRSSARESRIAHLESLTREWNDVFG 267
            RI P+  SS IS+R  P+P    I  CC +YE K AG    +SP AR LF++SR+VQ +   L+ R      R+  L+S++ EW  VFG
Sbjct:   27 RIDPSKFSSDISLRNHPKPSLQAIKDCCIHYESKAAGNVSTTSPLARHLFNMSREVQSMVDELIQREQRMRIRLQTLQSVSEEWTAVFG 115          
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: D2W2G1_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W2G1_NAEGR)

HSP 1 Score: 69.7 bits (169), Expect = 5.500e-12
Identity = 33/89 (37.08%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   16 PLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVL-----VGRSSARESRIAHLESLTREWNDVFG 267
            PLSSG+S R LP+    DI+K C +Y EKC G+Y   + A R + +++ ++  L  ++     V  S  RE  + HL  +  EWN+ FG
Sbjct:   99 PLSSGVSFRSLPKATCDDIIKVCNFYVEKCEGKYSEKTRAYRMMVEMANEIIKLTNIIQRDFEVEYSKQREQNV-HLNKVCEEWNNYFG 186          
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Match: A0A2R5GHD7_9STRA (Protein kinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHD7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.610e-11
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   28 GISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLFDLSRDVQDLCRVLVGRSSARESRIAHLESLTREWNDVFG 267
            G+S+R         + + C +YEEKCAG+Y+  S AAR+LF+L+R+VQ+    L    + +E R  +LE+  REW++ FG
Sbjct:  758 GMSLRARRRASPETLRETCWFYEEKCAGKYDCKSLAARYLFELAREVQEQADDLERLHAQQEDRTNYLEACMREWDETFG 837          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74852.17696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A5A8CJG2_CAFRO7.900e-3458.24Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DYU9_CAFRO1.600e-3158.24Abhydrolase_3 domain-containing protein n=1 Tax=Ca... [more]
A0A5A8DDF6_CAFRO1.670e-2760.26Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A6H5KMF9_9PHAE1.290e-1847.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTA0_ECTSI4.190e-1847.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0L0D731_THETB2.650e-1741.57Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A836CIS0_9STRA5.890e-1746.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J6E1N9_9EUKA7.120e-1642.70Uncharacterized protein n=1 Tax=Carpediemonas memb... [more]
D2W2G1_NAEGR5.500e-1237.08Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A2R5GHD7_9STRA2.610e-1140.00Protein kinase n=1 Tax=Hondaea fermentalgiana TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74852contigM-pyrifera_M_contig74852:640..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D7FTA0
Hectar predicted targeting categoryother localisation
EggNOG OGs2BZB3@1,2SGA8@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003820.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.888328-CDS-M-pyrifera_M_contig74852:639..7081622816646.888328-CDS-M-pyrifera_M_contig74852:639..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74852 640..708 +
1692278096.8965673-CDS-M-pyrifera_M_contig74852:639..7081692278096.8965673-CDS-M-pyrifera_M_contig74852:639..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74852 640..708 +
1622816646.90006-CDS-M-pyrifera_M_contig74852:815..10281622816646.90006-CDS-M-pyrifera_M_contig74852:815..1028Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74852 816..1028 +
1692278096.911182-CDS-M-pyrifera_M_contig74852:815..10281692278096.911182-CDS-M-pyrifera_M_contig74852:815..1028Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74852 816..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74852.17696.1prot_M-pyrifera_M_contig74852.17696.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74852 640..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74852.17696.1

>prot_M-pyrifera_M_contig74852.17696.1 ID=prot_M-pyrifera_M_contig74852.17696.1|Name=mRNA_M-pyrifera_M_contig74852.17696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
RIAPAPLSSGISMRQLPEPQFVDIVKCCQYYEEKCAGRYERSSPAARFLF
DLSRDVQDLCRVLVGRSSARESRIAHLESLTREWNDVFGVPSAS
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mRNA from alignment at M-pyrifera_M_contig74852:640..1028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74852.17696.1 ID=mRNA_M-pyrifera_M_contig74852.17696.1|Name=mRNA_M-pyrifera_M_contig74852.17696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=389bp|location=Sequence derived from alignment at M-pyrifera_M_contig74852:640..1028+ (Macrocystis pyrifera P11B4 male)
AGGATCGCCCCTGCACCACTCTCGAGTGGTATTTCGATGCGGCAGTTACC AGAGCCCCAATTTGTGGACGTAAGTGTGCGTATTCGGGTGCAACCGTCGT CGTTAGTTGGGAGAGGGTGTTTTTTCTCCATTTGGGGCGTCTTCATTCCC CACTTTGTTGTGTTCCCCGTCTGCAGATAGTGAAGTGCTGCCAGTACTAC GAGGAGAAGTGCGCGGGTCGGTACGAGAGGTCTAGTCCTGCGGCTCGTTT CCTGTTCGACCTGAGCCGCGACGTGCAGGACCTGTGTCGCGTGCTGGTGG GGCGCTCGTCTGCGCGAGAGTCTCGGATCGCGCACCTGGAGAGTCTGACG CGGGAGTGGAACGACGTCTTCGGGGTGCCAAGCGCTTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74852:640..1028+

>mRNA_M-pyrifera_M_contig74852.17696.1 ID=mRNA_M-pyrifera_M_contig74852.17696.1|Name=mRNA_M-pyrifera_M_contig74852.17696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig74852:640..1028+ (Macrocystis pyrifera P11B4 male)
AGGATCGCCCCTGCACCACTCTCGAGTGGTATTTCGATGCGGCAGTTACC
AGAGCCCCAATTTGTGGACAGGATCGCCCCTGCACCACTCTCGAGTGGTA
TTTCGATGCGGCAGTTACCAGAGCCCCAATTTGTGGACATAGTGAAGTGC
TGCCAGTACTACGAGGAGAAGTGCGCGGGTCGGTACGAGAGGTCTAGTCC
TGCGGCTCGTTTCCTGTTCGACCTGAGCCGCGACGTGCAGGACCTGTGTC
GCGTGCTGGTGGGGCGCTCGTCTGCGCGAGAGTCTCGGATCGCGCACCTG
GAGAGTCTGACGCGGGAGTGGAACGACGTCTTCGGGGTGCCAAGCGCTTC
TATAGTGAAGTGCTGCCAGTACTACGAGGAGAAGTGCGCGGGTCGGTACG
AGAGGTCTAGTCCTGCGGCTCGTTTCCTGTTCGACCTGAGCCGCGACGTG
CAGGACCTGTGTCGCGTGCTGGTGGGGCGCTCGTCTGCGCGAGAGTCTCG
GATCGCGCACCTGGAGAGTCTGACGCGGGAGTGGAACGACGTCTTCGGGG
TGCCAAGCGCTTCT
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