mRNA_M-pyrifera_M_contig74848.17693.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74848.17693.1
Unique NamemRNA_M-pyrifera_M_contig74848.17693.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74848.17693.1 vs. uniprot
Match: A0A507ESL2_9FUNG (YTH domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ESL2_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 2.080e-5
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   37 PARYFVVKVPNEAMLRTCARRNAWGVERDIATKINHALRSCRAIFLFFSVVNSKGFQGVARL 222
            P RYFV+  PN  M++     NA+     I+TK++ A R+ R + LFF+V +S+ +QG AR+
Sbjct:  525 PIRYFVLISPNYDMIKQSQNINAFATIPAISTKLSEAYRNSRHVVLFFTVKDSRRWQGYARM 586
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BLAST of mRNA_M-pyrifera_M_contig74848.17693.1 vs. uniprot
Match: A0A1X7V720_AMPQE (YTH domain-containing protein n=4 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V720_AMPQE)

HSP 1 Score: 49.7 bits (117), Expect = 3.800e-5
Identity = 26/63 (41.27%), Postives = 32/63 (50.79%), Query Frame = 1 
Query:   34 VPARYFVVKVPNEAMLRTCARRNAWGVERDIATKINHALRSCRAIFLFFSVVNSKGFQGVARL 222
            V  RYFV+K  N   +     +N W        K+N A R CR + L FSV  S GFQG A+L
Sbjct:  162 VNTRYFVIKSNNYENVDIAKSKNVWSTLPYNEKKLNKAYRDCRNVLLIFSVKESGGFQGFAKL 224
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74848.17693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A507ESL2_9FUNG2.080e-540.32YTH domain-containing protein n=1 Tax=Spizellomyce... [more]
A0A1X7V720_AMPQE3.800e-541.27YTH domain-containing protein n=4 Tax=Amphimedon q... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74848contigM-pyrifera_M_contig74848:24..245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.7771163-CDS-M-pyrifera_M_contig74848:23..2451622816646.7771163-CDS-M-pyrifera_M_contig74848:23..245Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74848 24..245 -
1692278096.8502939-CDS-M-pyrifera_M_contig74848:23..2451692278096.8502939-CDS-M-pyrifera_M_contig74848:23..245Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74848 24..245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74848.17693.1prot_M-pyrifera_M_contig74848.17693.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74848 24..245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74848.17693.1

>prot_M-pyrifera_M_contig74848.17693.1 ID=prot_M-pyrifera_M_contig74848.17693.1|Name=mRNA_M-pyrifera_M_contig74848.17693.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MVGAISEAVKLVPARYFVVKVPNEAMLRTCARRNAWGVERDIATKINHAL
RSCRAIFLFFSVVNSKGFQGVARL
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mRNA from alignment at M-pyrifera_M_contig74848:24..245-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74848.17693.1 ID=mRNA_M-pyrifera_M_contig74848.17693.1|Name=mRNA_M-pyrifera_M_contig74848.17693.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig74848:24..245- (Macrocystis pyrifera P11B4 male)
ATGGTCGGTGCGATTTCGGAAGCCGTGAAATTAGTACCTGCGCGATATTT
TGTGGTCAAGGTTCCCAATGAAGCAATGTTGAGAACTTGTGCACGTCGTA
ATGCTTGGGGTGTTGAACGTGATATTGCAACAAAGATCAACCATGCATTA
CGTTCCTGTAGAGCAATTTTCCTCTTCTTTTCCGTTGTCAACTCCAAAGG
ATTCCAAGGCGTTGCAAGATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74848:24..245-

>mRNA_M-pyrifera_M_contig74848.17693.1 ID=mRNA_M-pyrifera_M_contig74848.17693.1|Name=mRNA_M-pyrifera_M_contig74848.17693.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig74848:24..245- (Macrocystis pyrifera P11B4 male)
ATGGTCGGTGCGATTTCGGAAGCCGTGAAATTAGTACCTGCGCGATATTT
TGTGGTCAAGGTTCCCAATGAAGCAATGTTGAGAACTTGTGCACGTCGTA
ATGCTTGGGGTGTTGAACGTGATATTGCAACAAAGATCAACCATGCATTA
CGTTCCTGTAGAGCAATTTTCCTCTTCTTTTCCGTTGTCAACTCCAAAGG
ATTCCAAGGCGTTGCAAGATTGATGGTCGGTGCGATTTCGGAAGCCGTGA
AATTAGTACCTGCGCGATATTTTGTGGTCAAGGTTCCCAATGAAGCAATG
TTGAGAACTTGTGCACGTCGTAATGCTTGGGGTGTTGAACGTGATATTGC
AACAAAGATCAACCATGCATTACGTTCCTGTAGAGCAATTTTCCTCTTCT
TTTCCGTTGTCAACTCCAAAGGATTCCAAGGCGTTGCAAGATTG
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