mRNA_M-pyrifera_M_contig74839.17690.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74839.17690.1
Unique NamemRNA_M-pyrifera_M_contig74839.17690.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74839.17690.1 vs. uniprot
Match: A0A6H5JLQ4_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 4.840e-27
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 QEHGRVEYEILLEIITARDVRRAHAFRQQTLEEGADFDELFTGIDNTARKRDFGGTLV 174
            +EHGRVEYE LLEIITARDVRRAHAFRQQT EEGADFDELFTG+DNTARKRDFGGTLV
Sbjct:  603 KEHGRVEYETLLEIITARDVRRAHAFRQQTAEEGADFDELFTGVDNTARKRDFGGTLV 660
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BLAST of mRNA_M-pyrifera_M_contig74839.17690.1 vs. uniprot
Match: D8LCX6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX6_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.310e-26
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 QEHGRVEYEILLEIITARDVRRAHAFRQQTLEEGADFDELFTGIDNTARKRDFGGTL 171
            +EHGRVEYE LLEIITARDVRRA AFRQQT EEGADFDELFTG+DNTARKRDFGGTL
Sbjct:  213 KEHGRVEYETLLEIITARDVRRARAFRQQTAEEGADFDELFTGVDNTARKRDFGGTL 269
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74839.17690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLQ4_9PHAE4.840e-2793.10EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LCX6_ECTSI1.310e-2691.23EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74839contigM-pyrifera_M_contig74839:659..844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.5978892-CDS-M-pyrifera_M_contig74839:658..8441622816646.5978892-CDS-M-pyrifera_M_contig74839:658..844Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74839 659..844 +
1692278096.73933-CDS-M-pyrifera_M_contig74839:658..8441692278096.73933-CDS-M-pyrifera_M_contig74839:658..844Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74839 659..844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74839.17690.1prot_M-pyrifera_M_contig74839.17690.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74839 659..844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74839.17690.1

>prot_M-pyrifera_M_contig74839.17690.1 ID=prot_M-pyrifera_M_contig74839.17690.1|Name=mRNA_M-pyrifera_M_contig74839.17690.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
QEHGRVEYEILLEIITARDVRRAHAFRQQTLEEGADFDELFTGIDNTARK
RDFGGTLVSAA*
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mRNA from alignment at M-pyrifera_M_contig74839:659..844+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74839.17690.1 ID=mRNA_M-pyrifera_M_contig74839.17690.1|Name=mRNA_M-pyrifera_M_contig74839.17690.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig74839:659..844+ (Macrocystis pyrifera P11B4 male)
CAGGAACACGGGCGAGTAGAGTACGAGATTCTGCTGGAAATAATAACCGC
GAGGGACGTCCGCCGCGCCCACGCGTTCAGGCAGCAGACGCTAGAAGAGG
GGGCCGATTTCGATGAGCTCTTCACCGGAATCGACAACACCGCCAGGAAG
AGGGACTTCGGGGGGACACTGGTGAGCGCTGCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74839:659..844+

>mRNA_M-pyrifera_M_contig74839.17690.1 ID=mRNA_M-pyrifera_M_contig74839.17690.1|Name=mRNA_M-pyrifera_M_contig74839.17690.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig74839:659..844+ (Macrocystis pyrifera P11B4 male)
CAGGAACACGGGCGAGTAGAGTACGAGATTCTGCTGGAAATAATAACCGC
GAGGGACGTCCGCCGCGCCCACGCGTTCAGGCAGCAGACGCTAGAAGAGG
GGGCCGATTTCGATGAGCTCTTCACCGGAATCGACAACACCGCCAGGAAG
AGGGACTTCGGGGGGACACTGGTGAGCGCTGCTTGACAGGAACACGGGCG
AGTAGAGTACGAGATTCTGCTGGAAATAATAACCGCGAGGGACGTCCGCC
GCGCCCACGCGTTCAGGCAGCAGACGCTAGAAGAGGGGGCCGATTTCGAT
GAGCTCTTCACCGGAATCGACAACACCGCCAGGAAGAGGGACTTCGGGGG
GACACTGGTGAGCGCTGCTTGA
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