mRNA_M-pyrifera_M_contig74832.17689.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74832.17689.1
Unique NamemRNA_M-pyrifera_M_contig74832.17689.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74832.17689.1 vs. uniprot
Match: A0A6H5JKE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.000e-26
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 EVTVTFPEMPEDYPKKWLTFCAEGSLDAIEAFLGSAGKPLVALMSLRGALQVGYPQFVEMIAS 189
            EV+V+FPEMPE YPK W TFC EG + +IEAFLGS GKPLVAL+SLRGALQVGYP FV+MI++
Sbjct:  149 EVSVSFPEMPETYPKNWTTFCVEGKMTSIEAFLGSKGKPLVALLSLRGALQVGYPHFVQMIST 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74832.17689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKE3_9PHAE2.000e-2674.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74832contigM-pyrifera_M_contig74832:191..382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000950.1
Exons1
Model size192
Cds size168
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.5558228-UTR-M-pyrifera_M_contig74832:190..2141622816646.5558228-UTR-M-pyrifera_M_contig74832:190..214Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74832 191..214 +
1692278096.7102234-UTR-M-pyrifera_M_contig74832:190..2141692278096.7102234-UTR-M-pyrifera_M_contig74832:190..214Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74832 191..214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.5680625-CDS-M-pyrifera_M_contig74832:214..3821622816646.5680625-CDS-M-pyrifera_M_contig74832:214..382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74832 215..382 +
1692278096.7274663-CDS-M-pyrifera_M_contig74832:214..3821692278096.7274663-CDS-M-pyrifera_M_contig74832:214..382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74832 215..382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74832.17689.1prot_M-pyrifera_M_contig74832.17689.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74832 215..382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74832.17689.1

>prot_M-pyrifera_M_contig74832.17689.1 ID=prot_M-pyrifera_M_contig74832.17689.1|Name=mRNA_M-pyrifera_M_contig74832.17689.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MPEDYPKKWLTFCAEGSLDAIEAFLGSAGKPLVALMSLRGALQVGYPQFV
EMIAS*
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mRNA from alignment at M-pyrifera_M_contig74832:191..382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74832.17689.1 ID=mRNA_M-pyrifera_M_contig74832.17689.1|Name=mRNA_M-pyrifera_M_contig74832.17689.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig74832:191..382+ (Macrocystis pyrifera P11B4 male)
GAGGTGACGGTGACCTTCCCGGAAATGCCTGAGGATTACCCGAAGAAGTG
GCTGACGTTCTGCGCCGAGGGCTCGTTAGACGCGATCGAGGCCTTCTTGG
GCAGCGCCGGCAAGCCACTGGTGGCGCTCATGTCTTTGAGGGGTGCCTTG
CAAGTCGGGTACCCTCAGTTCGTTGAGATGATAGCTTCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74832:191..382+

>mRNA_M-pyrifera_M_contig74832.17689.1 ID=mRNA_M-pyrifera_M_contig74832.17689.1|Name=mRNA_M-pyrifera_M_contig74832.17689.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig74832:191..382+ (Macrocystis pyrifera P11B4 male)
ATGCCTGAGGATTACCCGAAGAAGTGGCTGACGTTCTGCGCCGAGGGCTC
GTTAGACGCGATCGAGGCCTTCTTGGGCAGCGCCGGCAAGCCACTGGTGG
CGCTCATGTCTTTGAGGGGTGCCTTGCAAGTCGGGTACCCTCAGTTCGTT
GAGATGATAGCTTCGTAGATGCCTGAGGATTACCCGAAGAAGTGGCTGAC
GTTCTGCGCCGAGGGCTCGTTAGACGCGATCGAGGCCTTCTTGGGCAGCG
CCGGCAAGCCACTGGTGGCGCTCATGTCTTTGAGGGGTGCCTTGCAAGTC
GGGTACCCTCAGTTCGTTGAGATGATAGCTTCGTAG
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