mRNA_M-pyrifera_M_contig74802.17686.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74802.17686.1
Unique NamemRNA_M-pyrifera_M_contig74802.17686.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A5A8DJQ5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJQ5_CAFRO)

HSP 1 Score: 85.5 bits (210), Expect = 1.820e-17
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 GIRCLVGLNSSPADHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G RCL  LN++  D C +  P  +  YC+AN+ +NV I+V++K+G SNLLWL ++  VP+A+  FALPF+P    +T+T    IGL++I  GL IY
Sbjct:  271 GFRCLATLNTAANDDC-SSAPYLVTAYCVANLGYNVLIIVILKMGGSNLLWLCLTTMVPMASFFFALPFVPIANRSTITPYTGIGLVVILGGLVIY 365          
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A5A8DP47_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DP47_CAFRO)

HSP 1 Score: 85.5 bits (210), Expect = 2.290e-17
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 GIRCLVGLNSSPADHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G RCL  LN++  D C +  P  +  YC+AN+ +NV I+V++K+G SNLLWL ++  VP+A+  FALPF+P    +T+T    IGL++I  GL IY
Sbjct:  733 GFRCLATLNTAANDDC-SSAPYLVTAYCVANLGYNVLIIVILKMGGSNLLWLCLTTMVPMASFFFALPFVPIANRSTITPYTGIGLVVILGGLVIY 827          
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A813BUP8_9DINO (Crtp3 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BUP8_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 9.890e-17
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 GIRCLVGLNSS-------PADHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G+ C  G+NS        P D C +    ++  Y + N+ +N+ I+ ++K G SN+LWLSI+ TVP+  + FALPF+P   H TLTWE W+GL+LI  GL +Y
Sbjct:  189 GLLCYGGINSVHETIDGIPPDDCKSAA-FYLSVYLVFNLAYNILIIYLLKFGGSNILWLSITFTVPLVNVAFALPFMPN--HKTLTWENWVGLVLIMGGLIVY 288          
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A836CD62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD62_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.700e-13
Identity = 41/100 (41.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 GIRCLVGLNSSPA----DHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G++C VG++S       DHC   GPL++  Y + NI +N+ I++++K GS+N+L++++++TVP+    FALPFIPG  H  L     IGL  I  GL +Y
Sbjct:  224 GLKCYVGVDSVEEGPYEDHCWPGGPLYVTLYLIFNITYNILIILILKYGSANILFMAMTITVPLGNAAFALPFIPG--HTPLQSTDIIGLFAIMGGLVLY 321          
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A482UBW4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UBW4_9ARCH)

HSP 1 Score: 73.6 bits (179), Expect = 3.390e-13
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 GIRCLVGLNSSPA-------DHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G RC  G+NS          D C   GP F+  Y L N+ +NV I++++K GSSN+LWL ++L VPIA L F +P +P   +  ++WE  +GL+++  GL IY
Sbjct:  288 GARCYAGINSIQTAGGPFVVDDC-ASGPAFVNVYILFNLGYNVLIILMLKYGSSNILWLCLTLQVPIANLAFGIPGMPN--YQKVSWEDGVGLVVVMAGLIIY 387          
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A0L0DEJ0_THETB (Drug/Metabolite transporter superfamily n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DEJ0_THETB)

HSP 1 Score: 72.0 bits (175), Expect = 1.180e-12
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 GIRCLVGLNSS-------PADHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G+RC  G NS         AD C  + P F+ GY L N+  NV +L +++VG++NLLWL++++ +PI++  FALPF+PG  H  +     IGL++I  GL IY
Sbjct:  258 GLRCSGGHNSVLHADEHYEADDCE-KAPFFVNGYLLGNLVMNVMMLSLVQVGNANLLWLAMTIVLPISSFVFALPFVPG--HKPVKATDGIGLVVIMAGLFIY 357          
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A4D8XT95_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus sp. BL_2016 TaxID=2494336 RepID=A0A4D8XT95_9ALVE)

HSP 1 Score: 69.7 bits (169), Expect = 7.240e-12
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    1 GIRCLVGLNSSPADHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G++C  G +S P+D C     L +  Y + NI +N+ I++++K GS+N LWL++++ VP+  + F LPF+PG     LT    IGL++I +GL  Y
Sbjct:  263 GMKCYAGEDSQPSDDCH-MSVLLVNVYLMFNIGYNILIIMILKHGSANTLWLALTVMVPLGNIAFTLPFVPGNRPLQLTDI--IGLVVIMIGLCSY 355          
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A7S2RKK2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKK2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.430e-12
Identity = 37/105 (35.24%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    1 GIRCLVGLNSSPADH---------CPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G+RC  G++S   D          C   GP+F+  Y + N+ +N+ I++++K GS+N+LWL++++ VP+  L FALPF+P   ++ +T+   +GL++I  GL  Y
Sbjct:  283 GLRCYFGVSSIQCDDDDDSCSTDACNPDGPIFVNIYLMFNVMYNILIIMILKWGSANILWLAMTVMVPLGNLAFALPFMPE--NSAITFYDILGLVVIMAGLVGY 385          
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A7S2K7X9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K7X9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.610e-12
Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 GIRCLVGLNS-----SPADHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G +C  G  S      P DHC T+  LF+  Y   N+ +N+ +++++K GSSN+L+L+ ++ VP+  L F LPF+P  +   +T  L  GL +I LGL++Y
Sbjct:  317 GFKCYTGTGSIFTGCHPDDHCSTEAALFVNIYLGVNLIYNLLVVLILKYGSSNILYLASTIMVPVGNLAFTLPFMPDPSVLRITDIL--GLAVIMLGLSVY 415          
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Match: A0A0L0G079_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G079_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 7.760e-12
Identity = 38/103 (36.89%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 GIRCLVGLNSS-------PADHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLLWLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY 288
            G++C +G+NS          D C    PL++  YC+ N+ +N+ +++++K G++NLLWL+++L VP+ +  FA+PF+PG  +  L    +IGL +I  GLA+Y
Sbjct:  329 GLKCYLGINSIYEASEGVTVDDCG-MAPLYVNIYCVLNLGYNILMILILKYGNANLLWLAMALMVPMGSAAFAMPFMPG--YKPLGVNGYIGLFVIVSGLAMY 428          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74802.17686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DJQ5_CAFRO1.820e-1745.83Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8DP47_CAFRO2.290e-1745.83Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A813BUP8_9DINO9.890e-1742.72Crtp3 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A836CD62_9STRA1.700e-1341.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482UBW4_9ARCH3.390e-1340.78Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A0L0DEJ0_THETB1.180e-1241.75Drug/Metabolite transporter superfamily n=1 Tax=Th... [more]
A0A4D8XT95_9ALVE7.240e-1238.54Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
A0A7S2RKK2_9STRA7.430e-1235.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2K7X9_9STRA7.610e-1237.62Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0L0G079_9EUKA7.760e-1236.89Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74802contigM-pyrifera_M_contig74802:10..297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue4.9e-10
Seed eggNOG ortholog529818.AMSG_06636T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Crt homolog
EggNOG OGs28IU4@1,2QR5M@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.3423307-CDS-M-pyrifera_M_contig74802:9..2971622816646.3423307-CDS-M-pyrifera_M_contig74802:9..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74802 10..297 +
1692278096.6015077-CDS-M-pyrifera_M_contig74802:9..2971692278096.6015077-CDS-M-pyrifera_M_contig74802:9..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74802 10..297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74802.17686.1prot_M-pyrifera_M_contig74802.17686.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74802 10..297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74802.17686.1

>prot_M-pyrifera_M_contig74802.17686.1 ID=prot_M-pyrifera_M_contig74802.17686.1|Name=mRNA_M-pyrifera_M_contig74802.17686.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
GIRCLVGLNSSPADHCPTQGPLFMLGYCLANIFFNVAILVVIKVGSSNLL
WLSISLTVPIATLTFALPFIPGTAHATLTWELWIGLILICLGLAIY
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mRNA from alignment at M-pyrifera_M_contig74802:10..297+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74802.17686.1 ID=mRNA_M-pyrifera_M_contig74802.17686.1|Name=mRNA_M-pyrifera_M_contig74802.17686.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig74802:10..297+ (Macrocystis pyrifera P11B4 male)
GGTATTCGTTGTCTCGTTGGCCTCAACTCCTCGCCGGCTGACCACTGCCC CACGCAAGGACCCTTGTTCATGCTCGGCTACTGCTTGGCCAACATCTTCT TCAACGTGGCCATCCTCGTGGTCATCAAGGTCGGCTCCTCCAACCTCCTC TGGCTCTCCATCTCCCTCACAGTGCCCATCGCAACACTCACCTTCGCGCT CCCTTTCATCCCAGGCACCGCCCACGCCACCCTCACCTGGGAACTCTGGA TCGGACTCATCCTCATCTGCCTCGGACTCGCTATCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74802:10..297+

>mRNA_M-pyrifera_M_contig74802.17686.1 ID=mRNA_M-pyrifera_M_contig74802.17686.1|Name=mRNA_M-pyrifera_M_contig74802.17686.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig74802:10..297+ (Macrocystis pyrifera P11B4 male)
GGTATTCGTTGTCTCGTTGGCCTCAACTCCTCGCCGGCTGACCACTGCCC
CACGCAAGGACCCTTGTTCATGCTCGGCTACTGCTTGGCCAACATCTTCT
TCAACGTGGCCATCCTCGTGGTCATCAAGGTCGGCTCCTCCAACCTCCTC
TGGCTCTCCATCTCCCTCACAGTGCCCATCGCAACACTCACCTTCGCGCT
CCCTTTCATCCCAGGCACCGCCCACGCCACCCTCACCTGGGAACTCTGGA
TCGGACTCATCCTCATCTGCCTCGGACTCGCTATCTACGGTATTCGTTGT
CTCGTTGGCCTCAACTCCTCGCCGGCTGACCACTGCCCCACGCAAGGACC
CTTGTTCATGCTCGGCTACTGCTTGGCCAACATCTTCTTCAACGTGGCCA
TCCTCGTGGTCATCAAGGTCGGCTCCTCCAACCTCCTCTGGCTCTCCATC
TCCCTCACAGTGCCCATCGCAACACTCACCTTCGCGCTCCCTTTCATCCC
AGGCACCGCCCACGCCACCCTCACCTGGGAACTCTGGATCGGACTCATCC
TCATCTGCCTCGGACTCGCTATCTAC
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