mRNA_M-pyrifera_M_contig748.17685.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig748.17685.1
Unique NamemRNA_M-pyrifera_M_contig748.17685.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig748.17685.1 vs. uniprot
Match: D8LR00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR00_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.430e-48
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 1 
Query:    1 REARTFAVKGELPELTEIRHTFFESRRKEKVELVKKERQSIINFLEQKDNT-LPALGKPGGGGCIGGPSVVAPDAEAEARRIKAGILDIERKRGQVIAERQEKEMQRVVENEQRVADLHKKIMRVEE 378
            R ++TFAVKGELPELTEIRH FFE+RRKEK+ +VKKERQSIINFL  K+ + LPALGK G G   G  +  A D E EARRIKAGIL+IERKRG VIAERQEKEMQRVVENEQR+ADLHKKI+RVEE
Sbjct:   42 RSSKTFAVKGELPELTEIRHNFFEARRKEKIAMVKKERQSIINFLSSKEQSGLPALGKSGSGLLAGATAASATDVELEARRIKAGILEIERKRGLVIAERQEKEMQRVVENEQRMADLHKKILRVEE 168
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BLAST of mRNA_M-pyrifera_M_contig748.17685.1 vs. uniprot
Match: A0A835Z042_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z042_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.890e-8
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 1 
Query:   19 AVKGELPELTEIRHTFFESRRKEKVELVKKERQSIINFLEQKDNTLPALGK---PGGGGCIGGPSV-----------VAPDAEAEARRIKAGILDIERKRGQVIAERQEKEMQRVVENEQRVADLHKKIM 366
            A + E  ++T+IR+  F+  R  K+ +V++ER+ I+  LE   ++ P+L K    GGG                   V  D  AEA +++AGIL++ERKR Q + +RQEKE+ R ++ E R A+L  KI+
Sbjct:   49 ASRSEPNDITQIRYDHFQKSRAAKLAIVRQEREVIMQRLE--GHSKPSLAKCTLTGGGXXXXXXXXXXXLSSSSEPRVTFDMAAEAEKVRAGILELERKRTQSVKKRQEKEVARALDAEARFAELQAKIL 176
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BLAST of mRNA_M-pyrifera_M_contig748.17685.1 vs. uniprot
Match: A0A6S9DXQ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DXQ3_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 3.330e-7
Identity = 42/116 (36.21%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:   34 LPE-LTEIRHTFFESRRKEKVELVKKERQSIINFLEQKDNTLPALGKPGGGGCIGGPSVVAPDAEAEARRIKAGILDIERKRGQVIAERQEKEMQRVVENEQRVADLHKKIMRVEE 378
            LPE + ++++   E RR EK+E+V +ER+++I ++E +     +   P  G  +   ++V    E  A++I+    D+ER+R + I  RQ KE+ R+V+ EQ +A LHKKI R EE
Sbjct:   59 LPEEIQKMKYEHLEKRRVEKLEVVVRERENVIKYMEARKEDSNS---PRSGNSVNTMNLV----EKRAKQIQQKTGDLERQRLEAIKRRQAKELARMVQTEQELAALHKKIARGEE 167
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig748.17685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR00_ECTSI1.430e-4875.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z042_9STRA3.890e-835.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9DXQ3_HETAK3.330e-736.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig748contigM-pyrifera_M_contig748:28852..33350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue6e-40
Seed eggNOG ortholog2880.D8LR00
Hectar predicted targeting categoryother localisation
EggNOG OGs29280@1,2R94D@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size378
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig748.17685.1prot_M-pyrifera_M_contig748.17685.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig748 28852..33350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.2780905-CDS-M-pyrifera_M_contig748:28851..289361622816646.2780905-CDS-M-pyrifera_M_contig748:28851..28936Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig748 28852..28936 +
1692278096.559698-CDS-M-pyrifera_M_contig748:28851..289361692278096.559698-CDS-M-pyrifera_M_contig748:28851..28936Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig748 28852..28936 +
1622816646.2880285-CDS-M-pyrifera_M_contig748:30302..303881622816646.2880285-CDS-M-pyrifera_M_contig748:30302..30388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig748 30303..30388 +
1692278096.570916-CDS-M-pyrifera_M_contig748:30302..303881692278096.570916-CDS-M-pyrifera_M_contig748:30302..30388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig748 30303..30388 +
1622816646.2987137-CDS-M-pyrifera_M_contig748:32410..325031622816646.2987137-CDS-M-pyrifera_M_contig748:32410..32503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig748 32411..32503 +
1692278096.5801024-CDS-M-pyrifera_M_contig748:32410..325031692278096.5801024-CDS-M-pyrifera_M_contig748:32410..32503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig748 32411..32503 +
1622816646.3125687-CDS-M-pyrifera_M_contig748:33236..333501622816646.3125687-CDS-M-pyrifera_M_contig748:33236..33350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig748 33237..33350 +
1692278096.590857-CDS-M-pyrifera_M_contig748:33236..333501692278096.590857-CDS-M-pyrifera_M_contig748:33236..33350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig748 33237..33350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig748.17685.1

>prot_M-pyrifera_M_contig748.17685.1 ID=prot_M-pyrifera_M_contig748.17685.1|Name=mRNA_M-pyrifera_M_contig748.17685.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
REARTFAVKGELPELTEIRHTFFESRRKEKVELVKKERQSIINFLEQKDN
TLPALGKPGGGGCIGGPSVVAPDAEAEARRIKAGILDIERKRGQVIAERQ
EKEMQRVVENEQRVADLHKKIMRVEE
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mRNA from alignment at M-pyrifera_M_contig748:28852..33350+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig748.17685.1 ID=mRNA_M-pyrifera_M_contig748.17685.1|Name=mRNA_M-pyrifera_M_contig748.17685.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4499bp|location=Sequence derived from alignment at M-pyrifera_M_contig748:28852..33350+ (Macrocystis pyrifera P11B4 male)
AGGGAAGCTAGGACGTTCGCCGTCAAGGGAGAGCTGCCGGAGCTGACGGA
GATTCGCCACACCTTCTTCGAGAGCAGGCGAAAAGGTGACTTGCACACTT
GAGTACGTTACTCCTATCATCGTTAAATATATTTTCCCTCTGGTACACCG
CTCTGTCCTATAACGTAAGGAACTCTTTCATGCTGTTAAAGGGGCCATAG
TAAATAGGACCAAATATTGTTACTAAAAAGAGGTAAATATATAGGTTTTT
GTTTTTTTTGTAGGTCCTATTTACTATAGTCCCCCTCGTAATAATATTAA
ATCAAACGGTCTCTATATTCCACAAAATCGGACAAATGTACCATCTAGAT
ATATAATCTTGCAACATATATACAGTAAGTGTATAATATAGATCCTCCAG
CAGATCCTTCAAGGGGGCTTCGCCGCGGCGGGCGTGGCTCCGCGCGTGGC
CGTGATGGTCGAGGACGTCTACGTAGCCCAATCGAGGCCGCTTGTGCGAC
AGTATTGCAAGGGGGCGCGTTCAGAATCATTCCATGGTTGAGTCAGGTTT
GATCGGGCCGAGAAATCACGAGAGGACCATACACCCTGCACCCTTCACCC
CCATACCGAGCTGTACGTGTTTATGGGCTGAAAGCACCATGTACGTGGTG
CTCCGGCATCCGTCTGGCTCTACACGTCGCAAAGCTGCGAGGAATACTTT
TCTTTGTGTTGACCGGCCCACCGAACCCACCGACTGCATCTACGCGCATC
CCCCCCGTGTGCTGTAGCACTCTTGCACTGCAGAGCAATAGCTATGGAGG
AAAAATTTCCTAAGGGACAACGATGACGACAGAAAGCAGGCAGTCTAAGT
GTCTGAAGGCCGTACGATCGAACCCGCTGCATCTTGGGCGATGAGGACCC
AGCAGCACTTGTCACCAAGTGCTATCTCCACAGGAGAAACTGACCCAAAT
ATATATATATATAAGTAATATACATATATCATACGCAGGACAAGGACGAC
AGGAAATATGTTTTTCAGAGCTCGCATCCGACTGGTGCATGCTCTCAGGA
AAAATGAAAAGTTGGGGGCCCAGTATCGTATACGCACTTATTTGTGCAGT
GCCCACCACAAGCTATGATACTGTGGTACGTACATGTGCATAATCAGCGA
CAATATTTATGAGACAAGCACAACAACAGCCGTCGACGTGAAGTCGACTA
ACCGAGGGTTTATTTCCGGACCGCTTGCAACAGGAGCAAATTATGTCCGG
CGATATAGCGGGGTGAGGCGGAATATCGGAGGCTTTTGGGGAAACAGGTT
GCGCTGCATCATACCGTACAGTTAATCATAATGTAGATGGAGACAGTTTG
TACAGGATTCCTAAATAGTAAATCACGCAGACATCAACTTCGCCCCCCTC
CCTCCCCCTCCCCTCGCTCCCCTCCCGGGGTTTTTCTCACGCGGCGCGCA
GAGAAAGTCGAGCTGGTGAAAAAAGAGAGGCAGTCCATCATCAACTTCCT
CGAGCAGAAAGACAACACCTTACCCGCGCTTGGCAAGGTGATTGAACTCC
CCCTGTCTACTTGCTGGTTACTGGTACTGGTGCAGTGTCGGCGCCACTCG
TATGTAAAACAGACTTTTCAAGAAAAAATCTTCCTGTTGACCTAAACAAA
CGAAATGAATTTAAAAAAAAAAAAATGCCAACTGTAACGCAAGCGCTCGC
CGTCTATTTGGGAATTTTTTCCCCTTGTAAGGGTGGTGCCTTATTTTGTA
AGAAACCCTCTCCCAGATAGCCCTTTACGCTCGCCTTAGAAGGCAGATAT
TGTCGGCTCCTGAATGTTGCAGCCAATTTACCGTCTCGCTCCGCCAGCGC
AAGGCCGTCCATTTTTTTCCCCCATTTATTTTCTCCACCCATTATGTTCT
GTCTCCTCTCTGTTCATTATTACAGGGGACCATAGTAAATAGGACCTACG
GTACACACAAAAACCTTCGTATTTACCTATTTTTACAAACAATATTTGGT
CCTATTTACTATAGACCCTCGCAATAGTCGTAACTCAGAACCGGGGGCAC
AAAGCAGGCTCTCGTCCCCCCTCCCCACTACGTACGATTCTTGCCTTGGC
TGGCATTTTTAATCGCTAGGGCACTTCGGCCCTTTCTTCCCTCGCCGCAA
CCAGGTACCTGGTACTATTTACGGGGGACCACAGTCAATAGGGCCAAACA
TTGTTAGTCAAAATAGCGAAATATATAGGTTTTTGTGTGTATCGCAGGTC
CTATTAACTATGCCCCCCCCCGTAATAGGCGCTCTCAGCAGTTGAGTCCG
TTTTTGTATTTATATTTGGACATATACTACATATTATAGAGAGGTGCAAC
TTCTTCTGTGGTCACACGTTGTTGCGGGGCCCCAGAGGAAGCCAAAATGT
TGGTGTACGTATCGCAAACGCTCTTGTGCCAACTTTCTATTGTAGTTTTT
TTCCCTCGCTTCCAAAGTCCAGGGCTGGTTTTTGCCCCGTCGGTTGTGCC
TGGAGCTCAAATCCCGGCTCTCTATACAGACAAGAAAACAGGAAGGATCT
CGATAAAGAAAAGAAAAGCGGGGGACTACCTGTACAGCAGTAATATTTTT
GACGCTAACTTATCTTACATATGATTTCACTCAAACGTGGGACAGATAGA
TGATCTACAGATAGATGATCTACATATAGATGATCTACAGATAGATCATC
TACATATATAGATGATCTATCTACAGATAGATGATCTACAGATAGATCAT
CTACAGATAGATAATCTAGATAGATCATCTACAGATAGATCATCCGCAGA
TAGATCATCTACAGATAGATCATCTACAGATAGATCATCTACGGATAGAT
AATCTTGCAGATAGATCATCTACAGATATATCATTTACAGATAGATCATC
CACAGATAGATCATCTACAGATAGATCATCTACAGATCTTCTGCAGATAT
ATCATCTACAGATATATCATCTGCAGATAGATCATCTACTGATAGATCAT
CTACAAATAGATCATACAGATCCTAACCTGCTGATACAAATAGGCTGTGC
AGGATCTGTACCGTATACTGTATACTGTAAAACGTGCCATTATTAACGGG
AATATAGTCCTCGTTTACACTATAACATCAATATCAAACGGAGCTTATTT
TTTCGGTCAGATTGGCAAAGATTTTCGGATCCAGGAAACCCGTCCTAAAT
ATCGCAGATCATACCGTTCCAACCCGGCAAAAATGTGTTAGAATACCATA
CAGACCACAATATCTATACCTGCTCTGGAAGGTCTAGATCATGGAAGTGG
GAATCGATCATCTCTCCGATGTGTGCCATGGTGCCTGTCTTTAACATGCC
TTCCGTACTTCCAGGCATGTTCTCGTTGCTTTCAATTTTCATCGGTTAAA
AGCAAAAAAATCTTCTTGCGGTTTAATTGGAAATCCTGGGAGAGGCGGTT
GCTTAGAGCGCCCGACCGTGGTGGAACCGACTAATTCCATCCTACGAACG
TGTTCCCGTTGATGAATTCTCGTCGGTTACATGCAAAAACTTGATTGTTT
TCTGGAAAGCCTGGAGGCGGAGGTTGCATAGGGGGTCCTAGCGTTGTGGC
CCCGGATGCGGAGGCGGAAGCGAGGAGGATTAAGGCCGGCATTCTGGACA
TCGTGAGTTTTTTGTTTTGTTTTGTTTTGTTCGCGCGTGTGTGTGATGAC
CGATTGATTGTTAACTTCGTTGTGAGCGAGACAAATATCATGCACGACTC
GTACTAGTAATAGCAACAGGTATTACGGAGGACCATAGTAAATAGGACCT
ACGGTTCAGACAAAAACCTATATATTTTTCTATTTTTACCAACGACGTTT
GGGTCTATTTACTATGGCCCCCTGTAGTACGTGTCTACAGCGTCCAGGTT
AAGATATTAGCACAGATAAGAGAGGGCAAATCGGCTTGAACCAAAACATT
ATATGACAAGTTGGTGTAGATAGTAGCTAAAGTCAAGATAGAACGCTAGT
TAAGAGAGCTATTTTTGTCCTGTACCACACCTCTCTTGAGTCGGGGTACC
CACTGTACTGCTGTGCCGTAAAGTAGCACTACGAGAAAAATTGACAAACA
TACGTGCATTCTGTTTCGTTGTTGTATAAGGTGTTGATGGTGTTGTTGTC
ATTTCCGTCGGAGTGTTACGGGTATACAAGCATTTTTGTTACTTGTTTTC
GTTAGTTTGTTTTGACTCTCTGTCTGTCACGTTGTGCGGTTATTTTTTGT
GGGTCTTTTTAATTGTTTTATCGTTGTTTTTTTGTTTCCGTCATCATATT
TGTTTTGTATATTGTGGCTTCGTTTTTATGTATATATATATGTATATTAT
TTGTTTTCCCCGTGTGTTGGTTTTGTAAAACCCAGGAACGAAAACGAGGA
CAAGTCATCGCCGAGCGCCAGGAAAAGGAAATGCAGAGAGTCGTCGAAAA
CGAGCAAAGGGTGGCCGACTTACACAAGAAAATTATGCGGGTGGAAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig748:28852..33350+

>mRNA_M-pyrifera_M_contig748.17685.1 ID=mRNA_M-pyrifera_M_contig748.17685.1|Name=mRNA_M-pyrifera_M_contig748.17685.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig748:28852..33350+ (Macrocystis pyrifera P11B4 male)
AGGGAAGCTAGGACGTTCGCCGTCAAGGGAGAGCTGCCGGAGCTGACGGA
GATTCGCCACACCTTCTTCGAGAGCAGGCGAAAAGAGGGAAGCTAGGACG
TTCGCCGTCAAGGGAGAGCTGCCGGAGCTGACGGAGATTCGCCACACCTT
CTTCGAGAGCAGGCGAAAAGAGAAAGTCGAGCTGGTGAAAAAAGAGAGGC
AGTCCATCATCAACTTCCTCGAGCAGAAAGACAACACCTTACCCGCGCTT
GGCAAGAGAAAGTCGAGCTGGTGAAAAAAGAGAGGCAGTCCATCATCAAC
TTCCTCGAGCAGAAAGACAACACCTTACCCGCGCTTGGCAAGCCTGGAGG
CGGAGGTTGCATAGGGGGTCCTAGCGTTGTGGCCCCGGATGCGGAGGCGG
AAGCGAGGAGGATTAAGGCCGGCATTCTGGACATCCCTGGAGGCGGAGGT
TGCATAGGGGGTCCTAGCGTTGTGGCCCCGGATGCGGAGGCGGAAGCGAG
GAGGATTAAGGCCGGCATTCTGGACATCGAACGAAAACGAGGACAAGTCA
TCGCCGAGCGCCAGGAAAAGGAAATGCAGAGAGTCGTCGAAAACGAGCAA
AGGGTGGCCGACTTACACAAGAAAATTATGCGGGTGGAAGAGGAACGAAA
ACGAGGACAAGTCATCGCCGAGCGCCAGGAAAAGGAAATGCAGAGAGTCG
TCGAAAACGAGCAAAGGGTGGCCGACTTACACAAGAAAATTATGCGGGTG
GAAGAG
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