mRNA_M-pyrifera_M_contig74792.17683.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74792.17683.1
Unique NamemRNA_M-pyrifera_M_contig74792.17683.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74792.17683.1 vs. uniprot
Match: A0A7Y2NA05_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2NA05_9ACTN)

HSP 1 Score: 198 bits (503), Expect = 2.550e-55
Identity = 132/290 (45.52%), Postives = 178/290 (61.38%), Query Frame = 1 
Query:    4 GWVAPMILAIAAAVVLLGFVVPWGWPEPVALALVLGAIAVIVTAALVQRLDDTTVAVAADRGLDTRDSFTAALQFAELPGPFGERIRARAERLGSLSSPDEAAPLPSMGRRWAVAGVLGLASIGMAFAPNPQDDVREERAQAEALIDAVADDLEIEAEELAEDPNTEALADQLQDLVEELREADDLAEAQELXXXXXXXXEQSKPDDFASRRAAVEGLDAGVGERPI--AAEGETAEEQLEALADSVGSMSEEEQAALAERLESLAATQAVGNPDVAAALADAAAALQAG 867
            GW+AP+++  A AVVL G++VPWGW EP A+ALV G +  +V  AL + L +   A +ADRGL T D+F AA++F  L G FGE IR RAE L + SSP +AAPLP++  RWA+A   G A++ M    NPQD VR +RA A    + +A +LE+EAEEL + P T  ++  L  L EELR A    E  EL         Q  P+ FA+ RAA EGL+  +   P+  A  G +A +Q+   A  +  +S+ EQ  LAERLE +A +QA G+P  A AL +AAA L+AG
Sbjct:   22 GWIAPVVVGAALAVVLTGWLVPWGWFEPAAIALVAGTLVGVVAFALFRPLTEIRAARSADRGLKTDDAFGAAVEFETLDGDFGESIRQRAETLAATSSPKQAAPLPALRGRWAIAAAFGAAALVMGIVTNPQDQVRADRAAANEFAEELATELELEAEEL-DTPATAEISAALDKLAEELRAAQSFEEIAELLSEAETELGQRSPN-FAAERAAAEGLERSLESNPLPGAEAGSSAADQIAQAAAGLDGLSDLEQKDLAERLEQIADSQAAGDPATAEALREAAAELKAG 309
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BLAST of mRNA_M-pyrifera_M_contig74792.17683.1 vs. uniprot
Match: A0A7Y2GLF1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GLF1_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 1.020e-41
Identity = 117/293 (39.93%), Postives = 168/293 (57.34%), Query Frame = 1 
Query:   10 VAPMILAIAAAVVLLGFVVPWGWPEPVALALVLGAIAVIVTAALVQRLDDTTVAVAADRGLDTRDSFTAALQFAELPGPFGERIRARAERLGSLSSPDEAAPLP--SMGRRWAVAGVLGLASIGMAFAPNPQDDVREERAQAEALIDAVADDLEIEAEELAEDPNT----EALADQLQDLVEELREADDLAEAQELXXXXXXXXEQSKPDDFASRRAAVEGLDAGVGERPI-AAEGETAEEQLEALADSVGSMSEEEQAALAERLESLAATQAVGNPDVAAALADAAAALQAG 867
            +AP++   A A+VL+G++ PWGWPEP A+ LV+ ++  IV  A   ++     A AADRGL+T D  T ALQ      PFG  I +RAE +   +   +A PLP  + G+RWA   ++   +IG+   PNPQDDVR +RA  +  I   A+ +E   EEL  +P T    E L  +L+ L+++L EAD + EA           +     +F S++AA  GLD  +   P+  A G  A +QLE   D + +++ E+Q ALA+RL+ LA  QAVGNP+ AAAL  AA AL+ G
Sbjct:   44 IAPLVALTALALVLIGWLKPWGWPEPAAIGLVVVSLLAIVAVAFGVKIPSALSARAADRGLETDDVLTTALQVPPDQRPFGPEIHSRAEAVAGGARSADAVPLPVTAGGKRWAGVALVAALTIGLGLWPNPQDDVRAQRASDQQRIAEEAEQIEELIEELQAEPATSPAEEELISELEQLLQDLEEADSIEEALADLAEAEAEIDAGITPEFLSQKAAASGLDRQLESEPLPGAAGGDAADQLEQTGDELENLTPEDQEALADRLDQLADDQAVGNPEAAAALRQAAEALRNG 336
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BLAST of mRNA_M-pyrifera_M_contig74792.17683.1 vs. uniprot
Match: A0A7Y1U5H2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y1U5H2_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 6.640e-36
Identity = 114/288 (39.58%), Postives = 157/288 (54.51%), Query Frame = 1 
Query:   13 APMILAIAAAVVLLGFVVPWGWPEPVALALVLGAIAVIVTAALVQRLDDTTVAVAADRGLDTRDSFTAALQFAELPGPFGERIRARAERLGSLSSPDEAAPLPSMGRRWAVAGVLGLASIGMAFAPNPQDDVREERAQAEALIDAVADDLEIEAEEL---AEDPNTEALADQLQDLVEELREADDLAEAQELXXXXXXXXEQSKPDDFASRRAAVEGLDAGVGERPIAAEGETAEEQLEALADSVGSMSEEEQAALAERLESLAATQAVGNPDVAAALADAAAALQAG 867
            AP + A A  VVL+G++ PW WP+  A+ L+  A+  +V AA+V R+ +  VA A DR LDT D+   ALQFA    PFGE I  RA         DEA PLP   + W +A VL  A++ +    NPQD++RE+ A    +I+ VA+  E  A+EL      P  EALAD L++L E+LR ADDL  A E          ++   D  ++RAA +GL   +   P++ EG TA +QL + AD++ S+SEE+Q             Q  G+P  A ALA AA  L  G
Sbjct:   34 APWVGAAALLVVLIGWIRPWAWPDVAAIVLLAVAVVGVVVAAMVLRVSEPAVARALDRALDTDDALVTALQFAPTE-PFGEAIHRRAAGYADADV-DEALPLPWKPKPWMIALVLVAAAVALIIVRNPQDEIREQNAADREVIEEVAEQFEERADELDGVVVGPEAEALADDLRELAEQLRNADDLDAAIEELEGAQDELLRTIDADALAQRAAAQGLQRTLQNNPVS-EGATAADQLASAADALDSLSEEQQXXXXXXXXXXXXXQTAGDPATAEALAQAAQELAEG 318
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74792.17683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7Y2NA05_9ACTN2.550e-5545.52Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A7Y2GLF1_9ACTN1.020e-4139.93Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A7Y1U5H2_9ACTN6.640e-3639.58Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74792contigM-pyrifera_M_contig74792:4..1068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.3
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog1229780.BN381_350146
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,COG5022@2
COG Functional cat.Z
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size1065
Cds size1047
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.1932285-UTR-M-pyrifera_M_contig74792:3..211622816646.1932285-UTR-M-pyrifera_M_contig74792:3..21Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74792 4..21 +
1692278096.5202851-UTR-M-pyrifera_M_contig74792:3..211692278096.5202851-UTR-M-pyrifera_M_contig74792:3..21Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74792 4..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.2063286-CDS-M-pyrifera_M_contig74792:21..10681622816646.2063286-CDS-M-pyrifera_M_contig74792:21..1068Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74792 22..1068 +
1692278096.5334706-CDS-M-pyrifera_M_contig74792:21..10681692278096.5334706-CDS-M-pyrifera_M_contig74792:21..1068Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74792 22..1068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74792.17683.1prot_M-pyrifera_M_contig74792.17683.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74792 22..1068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74792.17683.1

>prot_M-pyrifera_M_contig74792.17683.1 ID=prot_M-pyrifera_M_contig74792.17683.1|Name=mRNA_M-pyrifera_M_contig74792.17683.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=349bp
MILAIAAAVVLLGFVVPWGWPEPVALALVLGAIAVIVTAALVQRLDDTTV
AVAADRGLDTRDSFTAALQFAELPGPFGERIRARAERLGSLSSPDEAAPL
PSMGRRWAVAGVLGLASIGMAFAPNPQDDVREERAQAEALIDAVADDLEI
EAEELAEDPNTEALADQLQDLVEELREADDLAEAQELLAEAQELLEQSKP
DDFASRRAAVEGLDAGVGERPIAAEGETAEEQLEALADSVGSMSEEEQAA
LAERLESLAATQAVGNPDVAAALADAAAALQAGDTAGAAAALGEAALAQG
LASDAVASQLATSAAAQSLQQAQAQLGQGQGQGDGQGQGEGQGQGQGQG
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mRNA from alignment at M-pyrifera_M_contig74792:4..1068+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74792.17683.1 ID=mRNA_M-pyrifera_M_contig74792.17683.1|Name=mRNA_M-pyrifera_M_contig74792.17683.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at M-pyrifera_M_contig74792:4..1068+ (Macrocystis pyrifera P11B4 male)
CTCGGATGGGTCGCGCCGATGATCCTCGCCATCGCGGCGGCCGTGGTACT
GCTCGGGTTCGTCGTGCCCTGGGGCTGGCCCGAGCCGGTTGCGCTCGCCC
TGGTGTTGGGAGCCATCGCCGTGATCGTGACCGCCGCGCTGGTCCAACGA
CTCGACGACACCACCGTCGCCGTCGCTGCCGACCGGGGGCTCGACACCAG
AGACAGCTTCACGGCGGCGCTCCAGTTCGCCGAGCTGCCCGGACCGTTCG
GTGAACGAATCAGGGCCCGAGCCGAGCGACTCGGGAGCCTCTCGTCGCCA
GACGAAGCCGCACCGCTGCCCTCGATGGGTCGCCGGTGGGCCGTGGCCGG
AGTCCTGGGACTCGCCTCGATCGGCATGGCCTTTGCCCCGAACCCGCAGG
ACGACGTCAGGGAAGAACGGGCCCAGGCCGAGGCACTGATCGATGCCGTC
GCCGACGACCTCGAGATCGAGGCCGAGGAACTGGCCGAAGACCCGAACAC
CGAAGCGCTCGCCGACCAGCTCCAGGACCTCGTCGAGGAGTTGCGAGAGG
CCGATGATCTGGCCGAGGCCCAAGAACTGCTGGCCGAGGCCCAGGAGTTG
CTCGAGCAGTCGAAGCCCGACGATTTCGCCTCTCGACGCGCTGCGGTCGA
AGGTCTCGATGCCGGGGTCGGCGAACGTCCGATCGCCGCCGAGGGAGAGA
CAGCCGAAGAGCAGCTCGAGGCACTGGCCGACTCGGTCGGGTCGATGAGC
GAAGAGGAGCAGGCGGCGCTGGCCGAGCGACTCGAGAGCCTCGCTGCGAC
CCAGGCCGTGGGCAATCCCGATGTGGCTGCGGCGCTCGCCGATGCTGCCG
CCGCACTCCAGGCCGGTGACACCGCCGGCGCCGCCGCAGCCCTCGGAGAA
GCGGCGTTGGCCCAGGGACTCGCCTCCGATGCCGTCGCCTCCCAGCTCGC
AACTTCTGCTGCGGCCCAGTCCCTGCAACAAGCCCAAGCCCAGCTCGGCC
AGGGCCAGGGCCAGGGCGACGGTCAGGGACAAGGCGAAGGTCAGGGACAG
GGCCAGGGACAGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74792:4..1068+

>mRNA_M-pyrifera_M_contig74792.17683.1 ID=mRNA_M-pyrifera_M_contig74792.17683.1|Name=mRNA_M-pyrifera_M_contig74792.17683.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2094bp|location=Sequence derived from alignment at M-pyrifera_M_contig74792:4..1068+ (Macrocystis pyrifera P11B4 male)
ATGATCCTCGCCATCGCGGCGGCCGTGGTACTGCTCGGGTTCGTCGTGCC
CTGGGGCTGGCCCGAGCCGGTTGCGCTCGCCCTGGTGTTGGGAGCCATCG
CCGTGATCGTGACCGCCGCGCTGGTCCAACGACTCGACGACACCACCGTC
GCCGTCGCTGCCGACCGGGGGCTCGACACCAGAGACAGCTTCACGGCGGC
GCTCCAGTTCGCCGAGCTGCCCGGACCGTTCGGTGAACGAATCAGGGCCC
GAGCCGAGCGACTCGGGAGCCTCTCGTCGCCAGACGAAGCCGCACCGCTG
CCCTCGATGGGTCGCCGGTGGGCCGTGGCCGGAGTCCTGGGACTCGCCTC
GATCGGCATGGCCTTTGCCCCGAACCCGCAGGACGACGTCAGGGAAGAAC
GGGCCCAGGCCGAGGCACTGATCGATGCCGTCGCCGACGACCTCGAGATC
GAGGCCGAGGAACTGGCCGAAGACCCGAACACCGAAGCGCTCGCCGACCA
GCTCCAGGACCTCGTCGAGGAGTTGCGAGAGGCCGATGATCTGGCCGAGG
CCCAAGAACTGCTGGCCGAGGCCCAGGAGTTGCTCGAGCAGTCGAAGCCC
GACGATTTCGCCTCTCGACGCGCTGCGGTCGAAGGTCTCGATGCCGGGGT
CGGCGAACGTCCGATCGCCGCCGAGGGAGAGACAGCCGAAGAGCAGCTCG
AGGCACTGGCCGACTCGGTCGGGTCGATGAGCGAAGAGGAGCAGGCGGCG
CTGGCCGAGCGACTCGAGAGCCTCGCTGCGACCCAGGCCGTGGGCAATCC
CGATGTGGCTGCGGCGCTCGCCGATGCTGCCGCCGCACTCCAGGCCGGTG
ACACCGCCGGCGCCGCCGCAGCCCTCGGAGAAGCGGCGTTGGCCCAGGGA
CTCGCCTCCGATGCCGTCGCCTCCCAGCTCGCAACTTCTGCTGCGGCCCA
GTCCCTGCAACAAGCCCAAGCCCAGCTCGGCCAGGGCCAGGGCCAGGGCG
ACGGTCAGGGACAAGGCGAAGGTCAGGGACAGGGCCAGGGACAGGGCATG
ATCCTCGCCATCGCGGCGGCCGTGGTACTGCTCGGGTTCGTCGTGCCCTG
GGGCTGGCCCGAGCCGGTTGCGCTCGCCCTGGTGTTGGGAGCCATCGCCG
TGATCGTGACCGCCGCGCTGGTCCAACGACTCGACGACACCACCGTCGCC
GTCGCTGCCGACCGGGGGCTCGACACCAGAGACAGCTTCACGGCGGCGCT
CCAGTTCGCCGAGCTGCCCGGACCGTTCGGTGAACGAATCAGGGCCCGAG
CCGAGCGACTCGGGAGCCTCTCGTCGCCAGACGAAGCCGCACCGCTGCCC
TCGATGGGTCGCCGGTGGGCCGTGGCCGGAGTCCTGGGACTCGCCTCGAT
CGGCATGGCCTTTGCCCCGAACCCGCAGGACGACGTCAGGGAAGAACGGG
CCCAGGCCGAGGCACTGATCGATGCCGTCGCCGACGACCTCGAGATCGAG
GCCGAGGAACTGGCCGAAGACCCGAACACCGAAGCGCTCGCCGACCAGCT
CCAGGACCTCGTCGAGGAGTTGCGAGAGGCCGATGATCTGGCCGAGGCCC
AAGAACTGCTGGCCGAGGCCCAGGAGTTGCTCGAGCAGTCGAAGCCCGAC
GATTTCGCCTCTCGACGCGCTGCGGTCGAAGGTCTCGATGCCGGGGTCGG
CGAACGTCCGATCGCCGCCGAGGGAGAGACAGCCGAAGAGCAGCTCGAGG
CACTGGCCGACTCGGTCGGGTCGATGAGCGAAGAGGAGCAGGCGGCGCTG
GCCGAGCGACTCGAGAGCCTCGCTGCGACCCAGGCCGTGGGCAATCCCGA
TGTGGCTGCGGCGCTCGCCGATGCTGCCGCCGCACTCCAGGCCGGTGACA
CCGCCGGCGCCGCCGCAGCCCTCGGAGAAGCGGCGTTGGCCCAGGGACTC
GCCTCCGATGCCGTCGCCTCCCAGCTCGCAACTTCTGCTGCGGCCCAGTC
CCTGCAACAAGCCCAAGCCCAGCTCGGCCAGGGCCAGGGCCAGGGCGACG
GTCAGGGACAAGGCGAAGGTCAGGGACAGGGCCAGGGACAGGGC
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