mRNA_M-pyrifera_M_contig74780.17682.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74780.17682.1
Unique NamemRNA_M-pyrifera_M_contig74780.17682.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74780.17682.1 vs. uniprot
Match: D8LQ85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ85_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.140e-23
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 WNSVGFLFLTCYHWWWLAPVNIVTGVNVATMSVPPASLEMFGKYYR 138
            WNSVGF+FLTCYHWWWLAPVN+ TGVNVATMSVPP SLEMFGKYYR
Sbjct:  288 WNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYR 333
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BLAST of mRNA_M-pyrifera_M_contig74780.17682.1 vs. uniprot
Match: A0A835Z0S0_9STRA (TMEM164 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.590e-15
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 WNSVGFLFLTCYHWWWLAPVNIVTGVNVATMSVPPASLEMFGKYYR 138
            WN+VG++ LTCYH+W+LAPV++VTG+NVATM VPP  LE FG +YR
Sbjct:  224 WNTVGYVLLTCYHFWFLAPVSLVTGINVATMMVPPDPLETFGAWYR 269
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74780.17682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ85_ECTSI1.140e-2391.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0S0_9STRA1.590e-1567.39TMEM164 family-domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74780contigM-pyrifera_M_contig74780:763..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.1516707-CDS-M-pyrifera_M_contig74780:762..9001622816646.1516707-CDS-M-pyrifera_M_contig74780:762..900Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74780 763..900 -
1692278096.5082917-CDS-M-pyrifera_M_contig74780:762..9001692278096.5082917-CDS-M-pyrifera_M_contig74780:762..900Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74780 763..900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74780.17682.1prot_M-pyrifera_M_contig74780.17682.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74780 763..900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74780.17682.1

>prot_M-pyrifera_M_contig74780.17682.1 ID=prot_M-pyrifera_M_contig74780.17682.1|Name=mRNA_M-pyrifera_M_contig74780.17682.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
WNSVGFLFLTCYHWWWLAPVNIVTGVNVATMSVPPASLEMFGKYYR
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mRNA from alignment at M-pyrifera_M_contig74780:763..900-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74780.17682.1 ID=mRNA_M-pyrifera_M_contig74780.17682.1|Name=mRNA_M-pyrifera_M_contig74780.17682.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig74780:763..900- (Macrocystis pyrifera P11B4 male)
TGGAACTCCGTTGGATTCTTGTTTTTGACCTGCTACCACTGGTGGTGGCT
TGCCCCGGTCAATATCGTCACGGGCGTGAACGTGGCGACGATGTCGGTGC
CCCCGGCCTCCCTGGAGATGTTCGGGAAGTACTACCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74780:763..900-

>mRNA_M-pyrifera_M_contig74780.17682.1 ID=mRNA_M-pyrifera_M_contig74780.17682.1|Name=mRNA_M-pyrifera_M_contig74780.17682.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig74780:763..900- (Macrocystis pyrifera P11B4 male)
TGGAACTCCGTTGGATTCTTGTTTTTGACCTGCTACCACTGGTGGTGGCT
TGCCCCGGTCAATATCGTCACGGGCGTGAACGTGGCGACGATGTCGGTGC
CCCCGGCCTCCCTGGAGATGTTCGGGAAGTACTACCGCTGGAACTCCGTT
GGATTCTTGTTTTTGACCTGCTACCACTGGTGGTGGCTTGCCCCGGTCAA
TATCGTCACGGGCGTGAACGTGGCGACGATGTCGGTGCCCCCGGCCTCCC
TGGAGATGTTCGGGAAGTACTACCGC
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