mRNA_M-pyrifera_M_contig74758.17679.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74758.17679.1
Unique NamemRNA_M-pyrifera_M_contig74758.17679.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74758.17679.1 vs. uniprot
Match: A0A2D5QHX0_9GAMM (FYVE-type domain-containing protein n=1 Tax=Porticoccus sp. TaxID=2024853 RepID=A0A2D5QHX0_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 1.030e-8
Identity = 43/160 (26.88%), Postives = 74/160 (46.25%), Query Frame = 1 
Query:    1 PEFEREGGRFVAYPEEEALGAEVPSSVR---ILLRPGDYCIPVCHEGVNRSQMLFGLLEYLRDLMALCTPGKAMLRVELPHGATGGFDPFTEGADAEPLSDENMFRFLHTA----ETRWEEQTGAEDHGMVLLRAFSLAFGRSKAPRFGEAHMVARGLKP 459
            P+F + GGR +  P+++ + +++    +   I + P D+ IPVCH+G+NRSQ++  +L  +   +       A   V   HGA  G D  +   D   LS+E    ++       +  ++ +   +     L R F+  F + K PR GE     R L P
Sbjct:  320 PDFFKGGGRVIKAPDQDEVMSDMEKGDKPWSIGIHPTDFMIPVCHQGMNRSQVMRLVLTGVAKELHPPPDEDAAPWVSRAHGAVSGCDAHS-AYDPRTLSEETFIEYMFDPGDIFQQHYDAKRDTDPQRGPLQRGFNGLFKKRKLPRVGEEMAQHRKLNP 478
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74758.17679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D5QHX0_9GAMM1.030e-826.88FYVE-type domain-containing protein n=1 Tax=Portic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74758contigM-pyrifera_M_contig74758:363..821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.0457764-CDS-M-pyrifera_M_contig74758:362..8211622816646.0457764-CDS-M-pyrifera_M_contig74758:362..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74758 363..821 +
1692278096.4628615-CDS-M-pyrifera_M_contig74758:362..8211692278096.4628615-CDS-M-pyrifera_M_contig74758:362..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74758 363..821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74758.17679.1prot_M-pyrifera_M_contig74758.17679.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74758 363..821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74758.17679.1

>prot_M-pyrifera_M_contig74758.17679.1 ID=prot_M-pyrifera_M_contig74758.17679.1|Name=mRNA_M-pyrifera_M_contig74758.17679.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
PEFEREGGRFVAYPEEEALGAEVPSSVRILLRPGDYCIPVCHEGVNRSQM
LFGLLEYLRDLMALCTPGKAMLRVELPHGATGGFDPFTEGADAEPLSDEN
MFRFLHTAETRWEEQTGAEDHGMVLLRAFSLAFGRSKAPRFGEAHMVARG
LKP
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mRNA from alignment at M-pyrifera_M_contig74758:363..821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74758.17679.1 ID=mRNA_M-pyrifera_M_contig74758.17679.1|Name=mRNA_M-pyrifera_M_contig74758.17679.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig74758:363..821+ (Macrocystis pyrifera P11B4 male)
CCGGAATTCGAGCGAGAAGGAGGGCGGTTCGTGGCGTATCCAGAGGAGGA
AGCTTTGGGCGCCGAGGTGCCAAGTTCTGTGAGGATTCTCCTGCGTCCTG
GAGACTATTGCATCCCCGTGTGTCACGAGGGTGTGAATCGGTCGCAGATG
CTGTTTGGGTTGCTCGAGTACCTGAGGGACCTCATGGCCCTGTGCACCCC
AGGAAAAGCCATGCTGCGCGTCGAGTTGCCTCATGGCGCCACTGGGGGCT
TTGACCCGTTCACGGAAGGGGCAGATGCGGAGCCTCTGTCGGATGAGAAC
ATGTTTCGCTTCCTGCACACCGCAGAAACGCGCTGGGAGGAGCAAACGGG
CGCCGAAGATCACGGCATGGTTCTGCTGCGCGCGTTTTCGTTGGCATTCG
GCCGTTCCAAGGCGCCCCGCTTCGGTGAGGCGCACATGGTGGCGCGAGGC
TTGAAGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74758:363..821+

>mRNA_M-pyrifera_M_contig74758.17679.1 ID=mRNA_M-pyrifera_M_contig74758.17679.1|Name=mRNA_M-pyrifera_M_contig74758.17679.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig74758:363..821+ (Macrocystis pyrifera P11B4 male)
CCGGAATTCGAGCGAGAAGGAGGGCGGTTCGTGGCGTATCCAGAGGAGGA
AGCTTTGGGCGCCGAGGTGCCAAGTTCTGTGAGGATTCTCCTGCGTCCTG
GAGACTATTGCATCCCCGTGTGTCACGAGGGTGTGAATCGGTCGCAGATG
CTGTTTGGGTTGCTCGAGTACCTGAGGGACCTCATGGCCCTGTGCACCCC
AGGAAAAGCCATGCTGCGCGTCGAGTTGCCTCATGGCGCCACTGGGGGCT
TTGACCCGTTCACGGAAGGGGCAGATGCGGAGCCTCTGTCGGATGAGAAC
ATGTTTCGCTTCCTGCACACCGCAGAAACGCGCTGGGAGGAGCAAACGGG
CGCCGAAGATCACGGCATGGTTCTGCTGCGCGCGTTTTCGTTGGCATTCG
GCCGTTCCAAGGCGCCCCGCTTCGGTGAGGCGCACATGGTGGCGCGAGGC
TTGAAGCCCCCGGAATTCGAGCGAGAAGGAGGGCGGTTCGTGGCGTATCC
AGAGGAGGAAGCTTTGGGCGCCGAGGTGCCAAGTTCTGTGAGGATTCTCC
TGCGTCCTGGAGACTATTGCATCCCCGTGTGTCACGAGGGTGTGAATCGG
TCGCAGATGCTGTTTGGGTTGCTCGAGTACCTGAGGGACCTCATGGCCCT
GTGCACCCCAGGAAAAGCCATGCTGCGCGTCGAGTTGCCTCATGGCGCCA
CTGGGGGCTTTGACCCGTTCACGGAAGGGGCAGATGCGGAGCCTCTGTCG
GATGAGAACATGTTTCGCTTCCTGCACACCGCAGAAACGCGCTGGGAGGA
GCAAACGGGCGCCGAAGATCACGGCATGGTTCTGCTGCGCGCGTTTTCGT
TGGCATTCGGCCGTTCCAAGGCGCCCCGCTTCGGTGAGGCGCACATGGTG
GCGCGAGGCTTGAAGCCC
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