mRNA_M-pyrifera_M_contig74757.17678.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74757.17678.1
Unique NamemRNA_M-pyrifera_M_contig74757.17678.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: W7UC88_9STRA (Iron-sulfur cluster assembly 2 mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC88_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.860e-27
Identity = 58/125 (46.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 GRFRRDWWGGSVEGRRLSTNAPESS---SMFPDIIVSSRATKRLKELNAD-GEEEVRLRVAVEAGGCSGFQYTFDLITDPPKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVVN 363
            G +RR W     + R+LS+NA  +S   S+  D++V++   KR+K L    G+E ++LR++VE GGCSGF YTF +   P +DDD V G EGAQVVVDE +L+ +R ST+DF+ +M+R+ F VV+
Sbjct:   43 GIYRRSWSIYRHDFRQLSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVS 167          
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: A0A4D9DG01_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DG01_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.640e-25
Identity = 48/97 (49.48%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   76 SMFPDIIVSSRATKRLKELNAD-GEEEVRLRVAVEAGGCSGFQYTFDLITDPPKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVVN 363
            S+  D++V++   KR+K L    G+E ++LR++VE GGCSGF YTF +   P +DDD V G EGAQVVVDE +L+ +R ST+DF+ +M+R+ F VV+
Sbjct:    2 SLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVS 98          
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: UPI000C76FF62 (iron-sulfur cluster assembly 2 homolog, mitochondrial-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76FF62)

HSP 1 Score: 98.2 bits (243), Expect = 9.510e-24
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   25 GGSVEGRRLSTNAPESSSMFPDIIVSSRATKRLKELNADGEEEVRLRVAVEAGGCSGFQYTFDLITDP-PKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVVN 363
            G S +  RLS+ A E+S     +++S  A KRLKEL   G     LR+ VE GGCSGFQY FDL+ D  P +D+ ++ ++GA+V++DE +L+ ++ ST+D+  E+IRA F +VN
Sbjct:   18 GKSAKICRLSSTAVETSEPDHGLLLSESAVKRLKEL---GGGNSCLRITVEGGGCSGFQYKFDLVEDAVPAEDERIIDKDGAKVLIDETSLEYLKGSTVDYHRELIRAAFRIVN 128          
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: A0A024TH77_9STRA (Fe-S_biosyn domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TH77_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.240e-23
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   73 SSMFPDIIVSSRATKRLKELNADGEEEVRLRVAVEAGGCSGFQYTFDLITDPPKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVVN 363
            S   PD+I++   + +L  LN +   +  LRVAVE GGCSGFQY   L   P  DDD V  ++GA++VVD  ++DL++ ST+DF+ E+IR+ F V+N
Sbjct:   19 SDFLPDLIITKSTSTQLNALNRNSPTKKHLRVAVEGGGCSGFQYVITLEDAPLDDDDRVFEKDGARIVVDSTSMDLLKGSTVDFAQELIRSSFTVIN 115          
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: A0A1B6EEJ5_9HEMI (Fe-S_biosyn domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6EEJ5_9HEMI)

HSP 1 Score: 95.5 bits (236), Expect = 8.990e-23
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   43 RRLSTNAPESSSMFPDIIVSSRATKRLKELNADGEEEVRLRVAVEAGGCSGFQYTFDLITDPPKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVVN 363
            R LST  P       DI++S    KRL +++ DG     LR+ VE GGCSGFQY FDL      +DD +  ++GA+V+VD ++LDLI+ ST+DF  E+I++ F ++N
Sbjct:   20 RSLSTAVPNLDDAVEDIVLSDACVKRLNQISKDGSA---LRIIVEGGGCSGFQYKFDL-DKIVSEDDKIFEKDGAKVIVDNISLDLIKGSTVDFHQELIKSSFRIIN 122          
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: UPI000E6D982E (iron-sulfur assembly protein IscA-like 2, mitochondrial n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D982E)

HSP 1 Score: 94.4 bits (233), Expect = 2.690e-22
Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   52 STNAPESSSMFPDIIVSSRATKRLKELNADGEEEVRLRVAVEAGGCSGFQYTFDLITDPPKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVV 360
            +T  PE+SS    I++S    +RLK+L A+      LR+ VE+GGCSGFQY FD + +   DDD +  ++G +VV+DE +L+LI+ STIDF TE+IR+ F VV
Sbjct:   24 ATQKPETSSSHDGIVLSDSCVQRLKQLCANSN--TFLRLCVESGGCSGFQYKFD-VDEKLSDDDRIFEKDGVKVVIDETSLELIKGSTIDFHTELIRSAFRVV 123          
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: W4G9P9_9STRA (Fe-S_biosyn domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G9P9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.990e-22
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   73 SSMFPDIIVSSRATKRLKELNADGEEEVRLRVAVEAGGCSGFQYTFDLITDPPKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVVN 363
            S   PD+I++   + +L  LN     +  LRVAVE GGCSGFQY   L   P ++DD V  ++GA VVVD  ++DL++ ST+DF+ E+IR+ F V+N
Sbjct:   20 SDFLPDLIITKATSNQLNALNRTAATKQHLRVAVEGGGCSGFQYVITLEDTPLEEDDRVFEKDGAAVVVDPTSMDLLKGSTVDFAQELIRSSFTVIN 116          
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: A0A485L7K0_9STRA (Aste57867_16949 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7K0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.820e-22
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   73 SSMFPDIIVSSRATKRLKELNADGEEEVRLRVAVEAGGCSGFQYTFDLITDP---------------PKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVVN 363
            S   PD+I+++ ATK+L  LN + E +  LRVAVE GGCSGFQY   L   P                +D+D V  ++GAQVVVDE +++L++ ST+DF+ E+IR+ F ++N
Sbjct:   41 SDFLPDLIITNAATKQLNALNRNAENKQYLRVAVEGGGCSGFQYVVTLEDAPIGKMTMHVNFTYPGVAEDEDRVFEKDGAQVVVDETSMELLKGSTVDFAQELIRSSFTIIN 152          
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: UPI0018A763F0 (iron-sulfur cluster assembly 2 homolog, mitochondrial-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A763F0)

HSP 1 Score: 94.7 bits (234), Expect = 5.120e-22
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   55 TNAPESSSMFPDIIVSSRATKRLKELNADGEEEVRLRVAVEAGGCSGFQYTFDLITDPPKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVVN 363
            T + E +    D+++S     RLKE+  D ++   LRV VE GGCSGFQY FD+ T+  ++DD V   +GA+VV+DE +LD +R STID+ TE+IRA F +++
Sbjct:   63 TASSEKAEPSSDLLLSDSCVARLKEILGDEDKTSFLRVIVEGGGCSGFQYKFDIDTEV-QEDDRVFERDGAKVVIDETSLDFVRGSTIDYHTELIRAAFRILD 164          
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Match: UPI001F4F9DFC (iron-sulfur cluster assembly 2 homolog, mitochondrial n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F4F9DFC)

HSP 1 Score: 93.6 bits (231), Expect = 5.830e-22
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   70 SSSMFPDIIVSSRATKRLKELNADGEEEVRLRVAVEAGGCSGFQYTFDLITDPPKDDDLVVGEEGAQVVVDEVTLDLIRHSTIDFSTEMIRAGFEVVN 363
            SS+    + VS+  TKRLKE+++DG     LR+ VE GGCSGFQY FDL  +   DDD+V+ ++G +VV+DE +L+ IR STI+F  E+IR+ F +V+
Sbjct:   34 SSAAGQPLNVSTSCTKRLKEISSDGSN---LRITVEGGGCSGFQYKFDL-DENINDDDVVIEKDGVKVVIDETSLEYIRGSTIEFHEELIRSAFRIVD 127          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74757.17678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7UC88_9STRA1.860e-2746.40Iron-sulfur cluster assembly 2 mitochondrial-like ... [more]
A0A4D9DG01_9STRA8.640e-2549.48Fe-S_biosyn domain-containing protein n=1 Tax=Nann... [more]
UPI000C76FF629.510e-2444.74iron-sulfur cluster assembly 2 homolog, mitochondr... [more]
A0A024TH77_9STRA7.240e-2345.36Fe-S_biosyn domain-containing protein n=2 Tax=Apha... [more]
A0A1B6EEJ5_9HEMI8.990e-2343.93Fe-S_biosyn domain-containing protein (Fragment) n... [more]
UPI000E6D982E2.690e-2247.57iron-sulfur assembly protein IscA-like 2, mitochon... [more]
W4G9P9_9STRA2.990e-2245.36Fe-S_biosyn domain-containing protein n=3 Tax=Apha... [more]
A0A485L7K0_9STRA3.820e-2242.86Aste57867_16949 protein n=1 Tax=Aphanomyces stella... [more]
UPI0018A763F05.120e-2245.63iron-sulfur cluster assembly 2 homolog, mitochondr... [more]
UPI001F4F9DFC5.830e-2248.98iron-sulfur cluster assembly 2 homolog, mitochondr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74757contigM-pyrifera_M_contig74757:1..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue4e-17
Seed eggNOG ortholog157072.XP_008878438.1
Preferred nameISA2
KEGG koko:K15199,ko:K22063,ko:K22072
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0010467,GO:0016043,GO:0016053,GO:0016226,GO:0017144,GO:0018130,GO:0019538,GO:0019752,GO:0022607,GO:0031163,GO:0031974,GO:0032787,GO:0034641,GO:0042364,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044572,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0316@1,KOG1119@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko03029
Exons2
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.002472-CDS-M-pyrifera_M_contig74757:0..2461622816646.002472-CDS-M-pyrifera_M_contig74757:0..246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74757 1..246 -
1692278096.440601-CDS-M-pyrifera_M_contig74757:0..2461692278096.440601-CDS-M-pyrifera_M_contig74757:0..246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74757 1..246 -
1622816646.013028-CDS-M-pyrifera_M_contig74757:320..4371622816646.013028-CDS-M-pyrifera_M_contig74757:320..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74757 321..437 -
1692278096.4524698-CDS-M-pyrifera_M_contig74757:320..4371692278096.4524698-CDS-M-pyrifera_M_contig74757:320..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74757 321..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74757.17678.1prot_M-pyrifera_M_contig74757.17678.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74757 1..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74757.17678.1

>prot_M-pyrifera_M_contig74757.17678.1 ID=prot_M-pyrifera_M_contig74757.17678.1|Name=mRNA_M-pyrifera_M_contig74757.17678.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
GRFRRDWWGGSVEGRRLSTNAPESSSMFPDIIVSSRATKRLKELNADGEE
EVRLRVAVEAGGCSGFQYTFDLITDPPKDDDLVVGEEGAQVVVDEVTLDL
IRHSTIDFSTEMIRAGFEVVN
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mRNA from alignment at M-pyrifera_M_contig74757:1..437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74757.17678.1 ID=mRNA_M-pyrifera_M_contig74757.17678.1|Name=mRNA_M-pyrifera_M_contig74757.17678.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=437bp|location=Sequence derived from alignment at M-pyrifera_M_contig74757:1..437- (Macrocystis pyrifera P11B4 male)
GGGAGGTTTAGGAGGGATTGGTGGGGTGGGTCGGTGGAGGGAAGAAGATT ATCCACAAACGCACCAGAAAGCAGTTCAATGTTTCCCGACATCATTGTGT CTTCACGTGCAACCAAGGTATGGTATTTTTTCACATTCTTTCCAATCCTA TTCCCCACAAAACCACTTCTTCCATTTGTTCATCGTTGCAGAGATTGAAA GAATTGAACGCAGATGGAGAAGAAGAGGTGCGACTCCGTGTTGCAGTGGA AGCTGGGGGTTGTTCCGGATTTCAGTACACATTCGACCTCATAACCGATC CGCCAAAGGATGATGATCTTGTTGTAGGAGAAGAAGGTGCACAAGTTGTC GTAGATGAGGTCACTTTGGACCTCATCCGCCATTCCACCATCGATTTCTC AACAGAAATGATCCGAGCTGGATTTGAAGTGGTAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74757:1..437-

>mRNA_M-pyrifera_M_contig74757.17678.1 ID=mRNA_M-pyrifera_M_contig74757.17678.1|Name=mRNA_M-pyrifera_M_contig74757.17678.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig74757:1..437- (Macrocystis pyrifera P11B4 male)
GGGAGGTTTAGGAGGGATTGGTGGGGTGGGTCGGTGGAGGGAAGAAGATT
ATCCACAAACGCACCAGAAAGCAGTTCAATGTTTCCCGACATCATTGTGT
CTTCACGTGCAACCAAGGGGAGGTTTAGGAGGGATTGGTGGGGTGGGTCG
GTGGAGGGAAGAAGATTATCCACAAACGCACCAGAAAGCAGTTCAATGTT
TCCCGACATCATTGTGTCTTCACGTGCAACCAAGAGATTGAAAGAATTGA
ACGCAGATGGAGAAGAAGAGGTGCGACTCCGTGTTGCAGTGGAAGCTGGG
GGTTGTTCCGGATTTCAGTACACATTCGACCTCATAACCGATCCGCCAAA
GGATGATGATCTTGTTGTAGGAGAAGAAGGTGCACAAGTTGTCGTAGATG
AGGTCACTTTGGACCTCATCCGCCATTCCACCATCGATTTCTCAACAGAA
ATGATCCGAGCTGGATTTGAAGTGGTAAACAGATTGAAAGAATTGAACGC
AGATGGAGAAGAAGAGGTGCGACTCCGTGTTGCAGTGGAAGCTGGGGGTT
GTTCCGGATTTCAGTACACATTCGACCTCATAACCGATCCGCCAAAGGAT
GATGATCTTGTTGTAGGAGAAGAAGGTGCACAAGTTGTCGTAGATGAGGT
CACTTTGGACCTCATCCGCCATTCCACCATCGATTTCTCAACAGAAATGA
TCCGAGCTGGATTTGAAGTGGTAAAC
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