mRNA_M-pyrifera_M_contig7471.17673.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7471.17673.1
Unique NamemRNA_M-pyrifera_M_contig7471.17673.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: A0A6H5KRM5_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRM5_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 5.540e-79
Identity = 118/161 (73.29%), Postives = 134/161 (83.23%), Query Frame = 1 
Query:   13 QAKLALSKGEVPVGCVVVHALTERVVSYGHNETNRTFNATRHAELVAIDNALRSEADSSILRECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVHSGSGLPPSSYTYPCQPGLLAEEAVALFKNFYATENTKAPEPKRRKTIYEEQEPA 495
            +A++ALSKGEVPVGCVVVH  T R++S GHNET+  FNATRHAELVAID  LR++ D  +L EC LFVTCEPCIMCAAALRDV+IK VVFGC+NDRFGGCGSVLSVH GS LP S +TYPC  GLLA+EA+ALFK FY+ +N KAPEPKRRKT   EQ PA
Sbjct:   24 EAEMALSKGEVPVGCVVVHKPTARIISCGHNETSEAFNATRHAELVAIDGILRAQTDLCLLSECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGS-LPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKTGQHEQPPA 183
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: A0A835Z0K4_9STRA (tRNA specific adenosine deaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K4_9STRA)

HSP 1 Score: 173 bits (438), Expect = 7.430e-52
Identity = 92/158 (58.23%), Postives = 109/158 (68.99%), Query Frame = 1 
Query:   16 AKLALSKGEVPVGCVVVH--------------ALTERVVSYGHNETNRTFNATRHAELVAIDNALRSEADSSILRECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVHSGSGLPPSSYTYPCQPGLLAEEAVALFKNFYATENTKA 447
            A+ AL  GEVPVGCV+V               AL ++VV+ GHNETN T NATRHAELVAID AL   A+   +  C+LFVTCEPCIMCAAAL  + I  V FGC NDRFGGCGS++SVH GS + P+++TYP   GL  E+AVALF+ FYA EN KA
Sbjct:   21 AEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRAL---AEGRSVTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGKA 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: A0A4D9D5M2_9STRA (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5M2_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.170e-45
Identity = 81/171 (47.37%), Postives = 105/171 (61.40%), Query Frame = 1 
Query:   10 SQAKLALSKGEVPVGCVVVHALTE------------------RVVSYGHNETNRTFNATRHAELVAIDNALRSEADSSILRECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVHSGSGLPPSSYTYPCQPGLLAEEAVALFKNFYATENTKAPEPKRRK 468
            ++ ++A+ +GEVPVG V VH                      +++  GHN TN T N TRHAELV +D  L      S+ +EC ++VTCEPCIMCA AL  ++I+ VVFGC NDRFGGCGS+LSVH   G P   + Y    GL+  EA+ LFK+FYA EN +AP+ KRRK
Sbjct:   17 AEGQIAIEEGEVPVGVVFVHRPDSPKNTACSIDSSVSVSGPGKILGKGHNRTNATKNGTRHAELVIVDEILARGNPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVH---GAPHLRHRYVADAGLMENEAITLFKSFYARENRQAPDTKRRK 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: A0A482UKK3_9ARCH (Nucleoside deaminase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UKK3_9ARCH)

HSP 1 Score: 155 bits (392), Expect = 3.030e-45
Identity = 78/152 (51.32%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:   13 QAKLALSKGEVPVGCVVVHALTERVVSYGHNETNRTFNATRHAELVAIDNALRSEADSSILRECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVHSGSGLPPSSYTYPCQPGLLAEEAVALFKNFYATENTKAPEPKRRK 468
            QA++A+   EVPVGCV V   T+ V+  G N+TN T NATRHAELVAID  L         + C L+VTCEPCIMCAAAL  ++I  V FGC NDRFGG GS+L +H+      +++ Y  + G+L +EA+ +F+ FY  EN +APE KRRK
Sbjct:   14 QAEIAIEHSEVPVGCVFVDRTTKEVLGSGFNQTNLTLNATRHAELVAIDAILSHGHSVEAFKNCDLYVTCEPCIMCAAALAKLQIAKVFFGCHNDRFGGNGSILHIHTNP--YGNAHAYDVESGVLKDEAIEIFQRFYDRENERAPESKRRK 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: UPI001CE132E8 (tRNA-specific adenosine deaminase 2 isoform X2 n=2 Tax=Eupercaria TaxID=1489922 RepID=UPI001CE132E8)

HSP 1 Score: 155 bits (391), Expect = 8.120e-45
Identity = 87/156 (55.77%), Postives = 105/156 (67.31%), Query Frame = 1 
Query:   16 AKLALSKGEVPVGCVVVHALTERVVSYGHNETNRTFNATRHAELVAIDNAL----RSEAD-SSILRECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVHSGSGLPPSSYTYPCQPGLLAEEAVALFKNFYATENTKAPEPKRRK 468
            AK AL  GEVPVGC++V+   + VV  G NE N T NATRHAE+VA+D  L    RS  D SS+ +   L+VT EPCIMCAAALR + I  VV+GC N+RFGGCGSVL+V S + LP +  T+ C  G  AEEAV + K FY  EN  AP+PK RK
Sbjct:   33 AKDALESGEVPVGCLMVY--NDEVVGKGRNEVNETKNATRHAEMVALDQLLDWCRRSNLDVSSVCQRTALYVTVEPCIMCAAALRLLNIPAVVYGCRNERFGGCGSVLNVSSAN-LPQTGTTFKCVSGHRAEEAVEMLKTFYKQENPNAPKPKTRK 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: UPI001402C8E1 (tRNA-specific adenosine deaminase 2 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402C8E1)

HSP 1 Score: 154 bits (390), Expect = 1.300e-44
Identity = 80/158 (50.63%), Postives = 108/158 (68.35%), Query Frame = 1 
Query:   10 SQAKLALSKGEVPVGCVVVHALTERVVSYGHNETNRTFNATRHAELVAIDNAL-----RSEADSSILRECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVHSGSGLPPSSYTYPCQPGLLAEEAVALFKNFYATENTKAPEPKRRK 468
            + A+ AL++GEVPVGC+VV+A    V+  G N+ N T NATRHAELVA+D AL     +  A + +L+ C L+VT EPC+MCAA+LR + +  VV GC N+RFGGCGSV+S+HS   LP +  T+ C  G+ +EEAV + K FY  +N  AP PK +K
Sbjct:   19 NMAQTALARGEVPVGCLVVYA--GHVIGRGRNQVNETKNATRHAELVALDEALEWCRAQGLAPAGVLQACSLYVTVEPCVMCAASLRLLRLPRVVCGCRNERFGGCGSVMSIHSAE-LPHTGSTFQCVSGVRSEEAVDMLKTFYKGQNPNAPNPKIKK 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: A0A2J6KJA3_LACSA (CMP/dCMP-type deaminase domain-containing protein n=4 Tax=Lactuca TaxID=4235 RepID=A0A2J6KJA3_LACSA)

HSP 1 Score: 154 bits (389), Expect = 1.540e-44
Identity = 81/164 (49.39%), Postives = 105/164 (64.02%), Query Frame = 1 
Query:   13 QAKLALSKGEVPVGCVVVHALTERVVSYGHNETNRTFNATRHAELVAIDNALRSEADSSILR--------ECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVH-----SGSGLPPSSYTYPCQPGLLAEEAVALFKNFYATENTKAPEPKRR 465
            QAK+A    EVPVGCV+V  + E+V+S G N TN T NATRHAE+ AID  L    +  + +        +C L+VTCEPCIMCA+AL  + IK V +GC ND+FGGCGS+LS+H     S SG      +Y C  G++ EEAV+LF+NFY   N  AP+P R+
Sbjct:   18 QAKIAFDNLEVPVGCVIV--MDEKVISCGRNRTNETRNATRHAEMEAIDGLLEEWKEKGLTKHEVVEMFSKCYLYVTCEPCIMCASALSFIGIKEVYYGCANDKFGGCGSILSLHTNTTTSDSGEDVGRKSYKCTGGIMGEEAVSLFRNFYELGNPNAPKPHRQ 179
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: A0A1Z5T1L1_HORWE (CMP/dCMP-type deaminase domain-containing protein n=15 Tax=Teratosphaeriaceae TaxID=668547 RepID=A0A1Z5T1L1_HORWE)

HSP 1 Score: 155 bits (391), Expect = 1.970e-44
Identity = 81/151 (53.64%), Postives = 100/151 (66.23%), Query Frame = 1 
Query:   16 AKLALSKGEVPVGCVVVHALTERVVSYGHNETNRTFNATRHAELVAIDNALRSEADSSILRECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVHSGSGLPPSSYTYPCQPGLLAEEAVALFKNFYATENTKAPEPKRRK 468
            A+LALS  E PVGCV VH    +++  G N TN + N TRHAE VA+   + ++   SILRE  L+VT EPCIMCA+ALR   I+ V FGC NDRFGGCG V++VHS  GL P+   YP   GL  EEA+ L + FY  EN KAP+PK +K
Sbjct:   23 AELALSSDETPVGCVFVH--NGKIIGRGINGTNASLNGTRHAEFVALAEIM-AKHPPSILRETDLYVTVEPCIMCASALRQYRIRAVYFGCLNDRFGGCGGVMTVHSDPGLDPA---YPVYGGLFREEAIMLLRKFYVQENNKAPDPKPKK 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: A0A7C8YGT1_OPUST (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YGT1_OPUST)

HSP 1 Score: 153 bits (386), Expect = 4.240e-44
Identity = 81/161 (50.31%), Postives = 108/161 (67.08%), Query Frame = 1 
Query:   13 QAKLALSKGEVPVGCVVVHALTERVVSYGHNETNRTFNATRHAELVAIDNALRSEADSSILR--------ECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVHSGSG---LPPSSYTYPCQPGLLAEEAVALFKNFYATENTKAPEPKR 462
            +AK+AL K EVPVGCV+V     +V+++G N TN T NATRHAE+ AID  LR      +L+        EC L+VTCEPCIMC+AAL  +++K V +GC NDRFGGCGS+LS+HS S    +   S  + C  G++A EAV+LF++FY   N  AP+P+R
Sbjct:   22 EAKVALQKLEVPVGCVIVEK--GKVIAFGSNRTNETRNATRHAEMEAIDGLLRQWLADGLLQSDVIQRLSECILYVTCEPCIMCSAALSFLKLKEVYYGCANDRFGGCGSILSLHSTSSERCIISGSKGFKCVGGIMASEAVSLFQSFYERGNPNAPKPRR 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Match: A0A024TXU2_9STRA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXU2_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.320e-44
Identity = 82/156 (52.56%), Postives = 102/156 (65.38%), Query Frame = 1 
Query:   10 SQAKLALSKGEVPVGCVVVHALTERVVSYGHNETNRTFNATRHAELVAIDNALRSEA-DSSILRECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDRFGGCGSVLSVHSGSGLPPSSYT--YPCQPGLLAEEAVALFKNFYATENTKAPEPKRRK 468
            ++   AL +GEVPVGCV V  L   V+  G N TN  FNAT+HAELVAID  L  EA  SS  REC L+VTCEPCIMCAAAL  + +K VVFGC NDRFGG GS+LS+   +  P +S+   YP   GL+  EA+AL K+FY   N +    K+++
Sbjct:   21 AEGMYALDRGEVPVGCVFV--LNNEVIGRGGNRTNELFNATKHAELVAIDAILEEEAYTSSTFRECTLYVTCEPCIMCAAALALLHVKRVVFGCHNDRFGGNGSILSLQDANAFPGNSHHTGYPITHGLMKNEAIALLKDFYDRGNPRVENSKKKR 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7471.17673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRM5_9PHAE5.540e-7973.29CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A835Z0K4_9STRA7.430e-5258.23tRNA specific adenosine deaminase n=1 Tax=Tribonem... [more]
A0A4D9D5M2_9STRA1.170e-4547.37CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A482UKK3_9ARCH3.030e-4551.32Nucleoside deaminase n=1 Tax=archaeon TaxID=190666... [more]
UPI001CE132E88.120e-4555.77tRNA-specific adenosine deaminase 2 isoform X2 n=2... [more]
UPI001402C8E11.300e-4450.63tRNA-specific adenosine deaminase 2 n=1 Tax=Petrom... [more]
A0A2J6KJA3_LACSA1.540e-4449.39CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A1Z5T1L1_HORWE1.970e-4453.64CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7C8YGT1_OPUST4.240e-4450.31CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A024TXU2_9STRA5.320e-4452.56CMP/dCMP-type deaminase domain-containing protein ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7471contigM-pyrifera_M_contig7471:1817..10682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.7
Seed ortholog evalue5e-61
Seed eggNOG ortholog2880.D8LH63
Preferred nameTAD2
KEGG rclassRC00074,RC00514,RC00809
KEGG koko:K01485,ko:K15441
KEGG ReactionR00974,R01411,R02922
KEGG Pathwayko00240,ko00330,ko01100,map00240,map00330,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0019239,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1902494
EggNOG free text desc.deaminase activity
EggNOG OGsCOG0590@1,KOG1018@2759
Ec32 ortholog descriptionCMP/dCMP deaminase, zinc-binding
Ec32 orthologEc-24_000690.1
EC3.5.4.1
COG Functional cat.FJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons5
Model size522
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7471.17673.1prot_M-pyrifera_M_contig7471.17673.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7471 1817..10682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816645.599021-CDS-M-pyrifera_M_contig7471:1816..19421622816645.599021-CDS-M-pyrifera_M_contig7471:1816..1942Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 1817..1942 +
1692278096.1901643-CDS-M-pyrifera_M_contig7471:1816..19421692278096.1901643-CDS-M-pyrifera_M_contig7471:1816..1942Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 1817..1942 +
1622816645.6122909-CDS-M-pyrifera_M_contig7471:5590..56731622816645.6122909-CDS-M-pyrifera_M_contig7471:5590..5673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 5591..5673 +
1692278096.2023292-CDS-M-pyrifera_M_contig7471:5590..56731692278096.2023292-CDS-M-pyrifera_M_contig7471:5590..5673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 5591..5673 +
1622816645.6242404-CDS-M-pyrifera_M_contig7471:8891..90231622816645.6242404-CDS-M-pyrifera_M_contig7471:8891..9023Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 8892..9023 +
1692278096.2112584-CDS-M-pyrifera_M_contig7471:8891..90231692278096.2112584-CDS-M-pyrifera_M_contig7471:8891..9023Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 8892..9023 +
1622816645.6373663-CDS-M-pyrifera_M_contig7471:9362..94661622816645.6373663-CDS-M-pyrifera_M_contig7471:9362..9466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 9363..9466 +
1692278096.2207434-CDS-M-pyrifera_M_contig7471:9362..94661692278096.2207434-CDS-M-pyrifera_M_contig7471:9362..9466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 9363..9466 +
1622816645.651115-CDS-M-pyrifera_M_contig7471:10605..106821622816645.651115-CDS-M-pyrifera_M_contig7471:10605..10682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 10606..10682 +
1692278096.230465-CDS-M-pyrifera_M_contig7471:10605..106821692278096.230465-CDS-M-pyrifera_M_contig7471:10605..10682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7471 10606..10682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7471.17673.1

>prot_M-pyrifera_M_contig7471.17673.1 ID=prot_M-pyrifera_M_contig7471.17673.1|Name=mRNA_M-pyrifera_M_contig7471.17673.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MLHSQAKLALSKGEVPVGCVVVHALTERVVSYGHNETNRTFNATRHAELV
AIDNALRSEADSSILRECQLFVTCEPCIMCAAALRDVEIKGVVFGCTNDR
FGGCGSVLSVHSGSGLPPSSYTYPCQPGLLAEEAVALFKNFYATENTKAP
EPKRRKTIYEEQEPALGVSATGS*
back to top

mRNA from alignment at M-pyrifera_M_contig7471:1817..10682+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7471.17673.1 ID=mRNA_M-pyrifera_M_contig7471.17673.1|Name=mRNA_M-pyrifera_M_contig7471.17673.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8866bp|location=Sequence derived from alignment at M-pyrifera_M_contig7471:1817..10682+ (Macrocystis pyrifera P11B4 male)
ATGCTTCACTCACAGGCGAAGCTCGCTCTGAGCAAGGGAGAAGTTCCGGT
CGGCTGCGTTGTTGTGCATGCCCTCACCGAGCGAGTTGTCAGCTACGGCC
ACAACGAGACGAACAGGACATTTAACGTGAGAATCCCCTTCACTACTTTT
CACTATTTCTTGTGCTGTAGGCGCCATCGGCGGTAGTGCGTCCAGAGTCG
GGGAGACCGGAGACCTAACAAATACGTTTTTTTTTGTTATGCCCATATGA
AAGCTGTTTCTTATGCGGTCGGATTTGTACTTTTCGATCCCGAAAATGAA
AGCATCTGCTTTAAGCTAATTCTTATGCCGTCGGATTCACAGTCAGTTGA
AAAATTCCCTTTCAGCACGTTCGCATGAGCTTTTGCCCCGGAAATGTTAA
AAATTGGTCTCTCTCGCCTCATAATGTGTCGGAGTTCTCTCCAACATCTG
TCAGGGGGTGTTTGCTTATCGCGGAGCCCGGTTGAAAGAAATTCGTCGGC
ACTTTTCGATCCAAAAGAGGTGAATATGATTGCGATCGGGGATCGGATCG
AAAAATACGTTTTACGAGTACTCGATCCGATCGGGCGTTTGGATCGTGTT
TGACCCAGTTGGATCGAAAAAGTGCGGACGTCAATTTCCTGTACCTGGGT
GCCTGGAGAAGCGGGAAACACCCCCAGATAGATCTTGGAGATATCGGACA
CATTCTGAGACGAGAAATACCAATTTCCAACATTTCCGGGGCAAAAGCTC
ATGCGAACGTACTGAAAATTGTTTTTTAACTGACTGCAAATCCGACGGCA
CAAGAAAAAAGAAGTTACGCAGTCCGAATATGTAAAATCTGACCAGAATT
TTTTCGATTTGAGAATCCGACGGCCCAAGTCGTCATTTGACTTTGGCCCA
AAATCCGATGACCTGGGTCATCAGATTTTCGAATCGAAAGATGGCATGGT
CTCTGAATTCAAGATGTCGTCCACGACAGCAAGCGGCGGCAGAACGGTAG
CAGAGGTGGATGGTCACACAGCTGTAAAGCGATGTTGCTTCACGCCCGAC
GAGCGGTCGGCGGGCGGCGCGTCTCTCCGTGTCCAGACTACAGTCGGCTG
GCGCGGGCTCGGGCCTAGATACCAAGAGAAGCACATTCGGCGCGCACCTC
TCCGTGGATACGTACTCGTATACTACAGCAGCTGCACCAGCAGCACCAGC
AGCGCCAGCAGTCAGTCACATTGTGAAGTACCAAATGTCAAGACAGGTTG
ACTCTAGCGCACTCGGCACGTCTCTTCGCCGCCAGACCAAAGGCAGTCAG
CATTGGCTCGAACGCTTGGGTCCTACGCGCAGTGCAGCGCACCCAGCGCG
TCTCTTCGCGGTGCCAGACCACAACATCAGCAGATGGTCTCGGCGTTTGC
TCGAATCTCTGCACCCACAATAAATCCGATTCTTCCGCAGAGTAAGGCTG
TTTCGATTTGCGAAGTTCGCAGCTGAAAACGCGATCGGGCCCAAATCTGA
AGCTCCAAATCTGAACCGCACAGGAAACAGATTAAGATGAACTACTATGG
GAAATTATTTCTGGGCTCCAGGAATTGAGTCTTTAGGCCGATTATACGCG
TTTTACTCGGCGGGACAGTAAAAAATCATGGTAGACTCCTCAGAATGCTC
CCCGGAGTTTTCCGAGAACTTTCTAGAACACTTTTCCGTTTCTCCAGAAG
CCTAGTTTGATTTTGGGAGCAGTCAAACTGTTTTCTCTGGAGGATAAAAA
ATATGGTCAGAACTGAGGCCAGAAATAATGGATCTTAGAAGAGTTTTGGT
CAAGCATTATATGATGTCCTCAGAACTGGCAATATAGACGACCAGTCCAA
CTACGACTCTGGAGAAACGGAAAAGTGCTCGAGAAAGCTCTCGGAAAACT
AAGGGGAACATCCTGAGGAGTCTACCGGTGTTTTTGACAGTCCCGCCGAA
TAAATCGCGGGTTTTCGGTAAAAAAATCCAGTTCTTAGAGCCCTTCAAAT
TTTTCCCATAATAATTGGTCCAACAGGAAAACAAAAAAAGGTTGTTTTTT
AGATTTTTTTCCAATTTGGATTTGATTTCATGAAAAATGTTTGCGTACGT
ACGTGTTTGGGTCCCCCTAATGAGAAAAGTGAATTAAATGTTCGAATTAT
TCTGATTTCGAGAAAACACAGCACGTTTCACAACGCCCAGCTCGTCGGCG
TGTGCACGCCGCCGCCAGCCTCTTTTGATTTTGGTGGCATAGGCTAGGAA
GCTATCGCTCTCTGGGTGTCTTGGACGGGCTGAGGGATCCCTAAAACGCC
ACGGGCAGGACTGCGACGGCGATGCAGCTATCGGAGTCTTGACAAGGTCT
TGAGCGTATCCTCCCGTTTTTTGGTCGATCGCTCGGTTCCCGTGCGGTTG
GCGCATCGAGCTGGTTGGAACGCTCGGATTGCGAGCGCCATCCTTGTTTT
TGAGGCGCCACCGCTGGGGTACGCTGTGTTATGGTCTGTAGGGGTGGGCG
AGGATGCTGTCCGGTGGCCTCGCGTTGTGGCTCACATTTTATCACCTCGG
TCGTGGTCATCGATGCGTTCAAGAAATACGCCGCGATGTCCCGAGGACGT
TGACCCAACGTGGACATGCCGGCTAGGTCGGGTCAGCTCCCAAATTGGAA
TTTGATTACAGAAAAACGAGGTCCTCCAATCAAATTTTTAAACCCCAACA
TTCAAAGTCCTAGTCTTTGGTGGTTGTGCGTGTTTACAGCAATGAAAAGC
AAACTAGTTTTTCGTCTTCCCAAATTGGATTTCAGGACCCTGAGAACGCG
AAGTCCGTCCTTTAAAAATATTGCGCAAACCATCGTTCCGGATTGCGGTG
AACTTTTTTTTCACCGCATTCATTCCTGAACTCTTTGAAAATATGGTACA
GTAGTACCGCAATGCCCGCCAATCGACTCCGCTTGGCCGATTTAGGGGGG
GTAGAGCTACTCATAAAGTTGACTAGACAAATACTCGACCCTCCCCGCGG
ATGGCGCCTGTAGACAGTAGGGGCTATCCTATCATACGTGCTGTTGAAGT
ATGGTATGTTTTGGGGTTGGTGTTGCGTTGTGTCTTTCACTTTGTCACTT
AACCTGTCAACCCAGCACGCTATGTTGGTGTACGTATGCCAGTATGTTTC
GTTTTTGTTGTACAATCGTAGTTGTTGTTGATATCACAATATCAAGTACA
GTATACCAGGTACCTGGTGGCTCATTGCCGTATTCTGGTCCGTTGTCACG
AAAGGCACAAAAACTTTACAGGCTGGCGAGGATAACACACCAAAAAACTC
AGTCGGGGTCCCAGGATGCTATAGGACACGACCTATTGTACTGCACTAAC
ACAAAAATAGGCATATTTCACGTGCGGCAAGAAATTATAAGTTGTACATA
TCATGGATGTCACTATGTACGTGTGTTCGTACGAGCGCGCGATCTATTAA
TAGCTAGTGAGTATCATACCTGGTATTGATGGTGACAAGTGGACCCGTAC
CGCTGCCTATAGCTACGATAGCTGCGTAGCTTACGTTTCCACGGACGGCG
TGTAACGATATGATGACGCCGATCTAACTGCAAGCATGCGATGTAGCATT
TTGCGGGCACAGTCCGAACCAGGCTCCGACCAGGCTCCTCACACCACTCA
CCTCTGACGTATGATACGGCGAAGGTAAGCAGCATCGTGTAATAGCATCG
TGCAGTTTGCATATTTTACCCCCCAAATATCCAAGTTGTGCTGGCCGCCT
CTATCCCGTGCGCGTTTGTATCAGGCCACTCGACATGCAGAACTTGTGGC
AATCGACAACGCTTTACGATCAGAGGCGGATTCTTCCATTCTAAGAGAAT
GCCAACTGTGAGTCTGTGAGTCTGTGAGTGAGCACCACCTGCAAGTAGTG
GGCATAACCCCGCAGTATTCGGCCTGATTTTACGCAGCGTATGCACATGG
GATGGGTGCTACTGGGTACCAGCATATACCAGGTAGCTATATTTAAAGAC
AAGAAAAGTCGTCAAGGGATGTGGTCTCATGAACTTCTTCATCCTCTGTA
ACAGGTTCCTCGTGTACTTGTGCGTAGACCTCTACTCCATGTACTTGCGA
GTAAACGTGTACATACTAATCCAGGTACTCGTACGTTCAGTAGAGTTTTC
GGCAAGGGATCAACACAACTAACATGCACTGGGCTGTGATCGTGTACTGC
ACGAAACATCAAGAGCACTGCTTTTTGGAAGCTATACTCGTAGGTAGATG
ATGCCATTTTTGGATGGTTTTTGTGACACGCCAATTTTAAGTAAGATGGA
GCCTGCGGTTGCAGGTGGCGTGCACACGGCACGAACCCGTGGTGAGGGTC
GCGCAAACCTGAAGGCACAGAGGCAATGGCTAAGTGTCTCCCGCGTAGAT
GATGAATTGTTTCACTTAGCATGCGCCGTCGGGATATGTGAGCTGCTTCT
CGTCAGACAAATCTCTGGCCTTTATTAAAGAAAAACCTGAGTCACTCTAC
TGGCTGTGAGAGACTCCGTGTGTTGTGTTGCTGTAGTAACAACTGTGGCA
CTAGAACAGCTACTGGGCAGTAAGTACTCTGCTTCAGTAGAGCCTGCTCA
TTTCGCGCGCGGCAAAACTACATTAGACAAACCAAAATAACGAATTTATT
CTTAATAGAAATGATACCGATGGGCAGCTCGCTGGACGATCTACACGAAT
TTTCGCTTAACCAAGCAAAATGATCTACGATTATAATTTGTTTTTCTTTC
CCATGGGTGCGCCAAGTACCAGTACTCCTCGTAACATTAATATTAATAGT
ATACCAAACAGGTTTGTTGTGTGCTGCTTGACTTTGTCCCGGGACGCTTA
CGTACATAAGTAGAACTCTTATGGTAGAGCTCTTTGGATTGTCGCATGAG
ATGCCTTTGGAAGTGATTGCAAACTCCGGGCCTGGCGTCACTCACCGCCG
TAGCGGCTAAACCGACGCACATTTTCCCGAGATCAGGTAGACGTACGTAC
TGCGGGGAATATACATCTACGTATATACCTGCTCGAGTGTGTGTATGCCG
CTCCGTTGTCGTCGTGGTTTTGTCGCAACATAACTGCGGTACGTAGTCGT
ATTGTCGTAATGCTAACGAACGGTCTCGTTCATACTTTTTTCTTCTTGTT
CCATCTATTATCTTCGTCCTTCTTTATCCTGCTCCCTCTTGCCTAGTCTC
CTAGTCGTAGTTCGGATCGGGGTCACATAACAGGCGCTTCTCCCCCCGCC
GCTATGGTACGTGCCTTGCCTTGCACTTTTATCGCGAGAAGGATTCTGCG
CTTTCTTCCCTCGTTGAGTCGCGTCGGATTTTTTGGTTCCCACTCCAGGC
ACTCTCGGCAGTTGTTGGTGTCTTTCGAAGAAGAGAAACTCCATACTACG
GAGAATCGAAACCACGACGTAAACGCTATCAATAGCAGTATTCGAGGCTA
ACCACTATGATAGGTCACCGGGGCGACCAGTGCGATAATTAAGAAGTACA
ATGACAGCGTTACAACCACACCTGGAGCGCGATATGCACGGCACCAAGAG
GTAAAATATACGCTACTGCTTGCAACATCGGCATTTCCTTAGAGCCTTAC
AGGAAGATGACCTCTTTCACATATGCCGACGGAAAAATATAACCTCGTTC
TCGTACAGCTTGCATCTTGCACCCCCGCTGTGTATCGGAGCTCGGCACGA
TCGGTCCTCGACTTGAGCAATGTTAGGGACATATCCGGAGCGCTGCAAGG
AGCACCGGTGCGCAGACAGTAGGTTGCCCGACATCCTTGCATCAGTATGG
CTAAACGAATCCCCGACGAAACACCGAAGCAATGGGACCAAAAGCCAGCC
GAAACAGCAGTAGCGATAGATACAGCCTGCCGAACTGGCGGGGGACATGC
CAAGCCTAATATAGCGTCAATGCAGGCAGGCCTAAGTCAGAAGTCTGCAC
AAGCGCGAATTACATTTGCATATTCTGAGCGCAGCTCTGAACCCCGAAAC
GTAACTCAGCGCACGCCATGAGTGGCTCTGAGCGCAGATTACAAACAACG
AAGGCGAGAGATAAGCGCATATTGCAATTCCGAAGCAGGAAATACTACAC
CATCAACATGGCGAGCAGTTTTCCTTCCCTTGGTGTGGCGTCGATTATCT
CTGGTGCATATCACGCGTGCTGGGCTCGCAGTGGGGATCTCAAGTGCTTA
CTTGTACAAAATATTTTTTTTTGTCTAGCTTTTTTGTCTTGAACTTGGTG
TCGTAATTTGACCCGAGGTTACAAGGCAGCCTCCCCGCTCCTCCTGCCCT
ATTATTTTCCCCGCCAACCAGAAAATTGCTGCGGCGTTACCCAGATATTT
TTACCAATCATCGCTCTCCCTTACAACATGGACCAATAAAAAAACTGCGT
CACAGAAGACCATGGACAGAACGTGACGTCGCCTTGGATGGCATAATGTT
CCATCCAAGGATATTCCGCCAATCAGAACACCCCTTAAATATATTGATAC
ATCAGAAAACTGCGGGAACGAAATACCTTTCTCTACCCGGTTGCCACAGC
TCTCTCCCTTATGTTGCCGCACGTTGCGTTCTTGAGTACTCACTCCCAAC
GCTGGTCGACTTGCGTCGAAAGGTGCTTGCTCACGCCAAGCGCTTTTCGC
GTCGTAAGTTATTGTTTTCGACGTTGGCCGCAGTCTGCAAGAGACTTGAC
GTTAGGTGTACAACGATATCACCCAGAAGTCAACTCATCTCCAAATCGCG
CAAGAGGCTACACGGTTACCGCCACACCACTGGAGCGACCGGCGTATCCA
CGAAGCTGGGCTGTTATGTTACGTGTTACGACCTGTCACAGTAGGACTGC
TCTACCTCAATTTATATATCGTTGACAGACTTTGGGCCTGAACGCACCAT
AAATTTGTTGTGCAGCATGGTGCTCTTGGGCTCTTTGTGGGGACCGTCGT
TTCAGCAGCCAACTATCAATAGCTCACACGCTCACACGCCCTTCCTCATC
TTCAGCTGGTATTGCCCGTGGTTGCAGAGTGAGCTCTAATCGCTGTTTTT
ATGCTGTCGAAATGTTTCTATTCAGGTTTGTAACATGCGAGCCGTGTATT
ATGTGCGCCGCAGCACTGCGTGATGTTGAAATCAAGGGAGTTGTGTTCGG
TTGCACCAACGACCGATTTGGAGGCTGTGGTTCTGTACTCAGTGTCCACA
GCGGCAGGTATGTTTATGTCTTGGTTACTCTTATATCGCTACTTCGCTAC
TTGGCAGTTGTTTGTGCACTTTGAGGAGATTAATTTAATGAAGGCGCGTT
GTTAAAACGCTGTGCGGCTCTCCAAAAAGATGGACAGTTCGTGTTGCTCG
GTCCTTCGTTTCGGCATGTTTGTGCTGCCTTGCTTCGATGATGCCGACCT
ACCGTATCGTTCGAGCTGCTTGAGACCACGTGCAGTAAGCTATGAGTACA
AACATGTTTATATGTGCCGTGTCGTTTTTATCTCGAGCGCCAGAGCAAAC
TCTTTAACGGATCTTCTCATCAGCCTATTTTCTTACTTATTTCCAGCGGT
CTACCACCATCAAGTTACACGTACCCGTGCCAGCCTGGACTTCTGGCTGA
AGAAGCTGTCGCGCTTTTCAAGAACTTCTACGCCACGGAGAACACTAAAG
GTAAAAGAGCCCATTTGGTTGCTTGTTGTTTGGTTTTTTTACCCTGCGTC
GTCCAAGAAAAATGTGATTTCCTTGTTCGTCATTGTCGTCTCCAAAAGCT
GGTCGTGGGAAGTGTTTTACTATAAATACTAATATTAAACGTCTTTGTAA
AGATGCGTTACGTCTTTATCCCTTTGTCTGTATTGTACGGTTTTGCATAA
TCCCACGAGGTGGACCAAAAACGCATCGCCGTACGAAACAAATTTCTACG
TATGGCTGCGCTTTGATGCCCCACATACACTCACGCTCATGACCATATTG
CAATAGCAATTTGGAAACTCAGCATACTGGTTTTCCTTGTTCAACGACCA
GCTGGTGTGACGCCGGGTATTAGTTGAAAATGTTGCTGGCTACCGTTTTG
TCTTCTTCATCCTCCCTCGCCTTTGAAGTTCATCGGGCGCCACAGAGCAC
TCTTGATCATACTCGTGCGGCGCACGGCATACCGATCAATTAAAAGACGA
CGGAGGATGATGAAGACAAACGGCAGCCAGGAACATCTACAACTAACGCT
TGATGTCACACTATTACGGGGGTCCATAGTTAACAGGACCAAATTTTGTT
AGTAAAAATAGGTAAATGTATAGGTTTTTATCTATACCATAGGTCCTATT
AACTATGTACCCCCGTAATATCTGCTCCTCGAACAATGGAAAACATTATG
CTGAGTTTCCAAGTTGTTATTACAATAATCTGCTGAGCGTAAGTGAGCGT
GGGGTATCAAAGCGCAGCAATGTGTTGCAATTCGCTCTTGAAAGGCCGTG
CATTTGGGTCTGCCTTGTGTTTTTTTTGCGAAACTATCCAATACAGATAA
AGGGATCAAGTAAGTTTGAGGTGCTTTCTTGCTTCGCGTCCGCCCTTTGC
CGGAAACTAAACGAACTCCGTTGAAAGCGTCCTCTCTTGATAAAAGTCGT
ACGAAATACCACCGAGGTGTTGCTGTTCAGCAATCAGTAACTTGGCCAGA
CGTTTGTTCACCGATACCAGGTATACATGTGGTCTAGTACTGTGCGTGCT
GTTCCTGTTGCTGGTTTTACACAATCTTGATGCAAGTGATGTATGACGGA
TTTGGCTGGGTTTCGTGTTTTTGTCCCGCTTGTAACCAGCGCCGGAGCCT
AAAAGGAGAAAGACGATCTACGAAGAACAGGAGCCTGCGCTTGGAGTGAG
TGCAACGGGATCGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7471:1817..10682+

>mRNA_M-pyrifera_M_contig7471.17673.1 ID=mRNA_M-pyrifera_M_contig7471.17673.1|Name=mRNA_M-pyrifera_M_contig7471.17673.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig7471:1817..10682+ (Macrocystis pyrifera P11B4 male)
ATGCTTCACTCACAGGCGAAGCTCGCTCTGAGCAAGGGAGAAGTTCCGGT
CGGCTGCGTTGTTGTGCATGCCCTCACCGAGCGAGTTGTCAGCTACGGCC
ACAACGAGACGAACAGGACATTTAACATGCTTCACTCACAGGCGAAGCTC
GCTCTGAGCAAGGGAGAAGTTCCGGTCGGCTGCGTTGTTGTGCATGCCCT
CACCGAGCGAGTTGTCAGCTACGGCCACAACGAGACGAACAGGACATTTA
ACGCCACTCGACATGCAGAACTTGTGGCAATCGACAACGCTTTACGATCA
GAGGCGGATTCTTCCATTCTAAGAGAATGCCAACTGCCACTCGACATGCA
GAACTTGTGGCAATCGACAACGCTTTACGATCAGAGGCGGATTCTTCCAT
TCTAAGAGAATGCCAACTGTTTGTAACATGCGAGCCGTGTATTATGTGCG
CCGCAGCACTGCGTGATGTTGAAATCAAGGGAGTTGTGTTCGGTTGCACC
AACGACCGATTTGGAGGCTGTGGTTCTGTACTCAGTGTCCACAGCGGCAG
GTTTGTAACATGCGAGCCGTGTATTATGTGCGCCGCAGCACTGCGTGATG
TTGAAATCAAGGGAGTTGTGTTCGGTTGCACCAACGACCGATTTGGAGGC
TGTGGTTCTGTACTCAGTGTCCACAGCGGCAGCGGTCTACCACCATCAAG
TTACACGTACCCGTGCCAGCCTGGACTTCTGGCTGAAGAAGCTGTCGCGC
TTTTCAAGAACTTCTACGCCACGGAGAACACTAAAGCGGTCTACCACCAT
CAAGTTACACGTACCCGTGCCAGCCTGGACTTCTGGCTGAAGAAGCTGTC
GCGCTTTTCAAGAACTTCTACGCCACGGAGAACACTAAAGCGCCGGAGCC
TAAAAGGAGAAAGACGATCTACGAAGAACAGGAGCCTGCGCTTGGAGTGA
GTGCAACGGGATCGTAACGCCGGAGCCTAAAAGGAGAAAGACGATCTACG
AAGAACAGGAGCCTGCGCTTGGAGTGAGTGCAACGGGATCGTAA
back to top