mRNA_M-pyrifera_M_contig74708.17671.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74708.17671.1
Unique NamemRNA_M-pyrifera_M_contig74708.17671.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74708.17671.1 vs. uniprot
Match: A0A7W1JM88_9BACT (Tetratricopeptide repeat protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7W1JM88_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 4.340e-5
Identity = 25/79 (31.65%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:   58 MDEDDFEHLMQEAIDAGSKGDLQRALPLFRRLAELDSENSAAWTNLGVTEMRAGHTEAAQEAYDRAMDLAPWDVTPRFN 294
            M  D  + L+ +A D   + + ++A  + R+  E+D+ NS A+  LGV   R G  E A +A+ RA+  AP+     +N
Sbjct:    1 MSTDQVKQLITDASDHVREQNFEKAAEIARQALEVDTRNSDAYGVLGVAFARLGRIEEATDAFQRAVQTAPYSARSYYN 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74708.17671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7W1JM88_9BACT4.340e-531.65Tetratricopeptide repeat protein n=1 Tax=Armatimon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74708contigM-pyrifera_M_contig74708:768..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816645.5201755-CDS-M-pyrifera_M_contig74708:767..10611622816645.5201755-CDS-M-pyrifera_M_contig74708:767..1061Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74708 768..1061 +
1692278096.1634595-CDS-M-pyrifera_M_contig74708:767..10611692278096.1634595-CDS-M-pyrifera_M_contig74708:767..1061Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74708 768..1061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74708.17671.1prot_M-pyrifera_M_contig74708.17671.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74708 768..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74708.17671.1

>prot_M-pyrifera_M_contig74708.17671.1 ID=prot_M-pyrifera_M_contig74708.17671.1|Name=mRNA_M-pyrifera_M_contig74708.17671.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MCHTIFLSVLLCVFVVVGAMDEDDFEHLMQEAIDAGSKGDLQRALPLFRR
LAELDSENSAAWTNLGVTEMRAGHTEAAQEAYDRAMDLAPWDVTPRFN
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mRNA from alignment at M-pyrifera_M_contig74708:768..1061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74708.17671.1 ID=mRNA_M-pyrifera_M_contig74708.17671.1|Name=mRNA_M-pyrifera_M_contig74708.17671.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig74708:768..1061+ (Macrocystis pyrifera P11B4 male)
ATGTGCCACACTATCTTCCTTTCAGTACTATTGTGTGTATTTGTTGTTGT
GGGTGCCATGGATGAGGATGATTTTGAGCATTTGATGCAAGAGGCGATTG
ATGCTGGATCGAAGGGAGATTTGCAGCGTGCGCTGCCACTTTTTCGGCGT
CTTGCTGAGCTAGACTCTGAGAATTCTGCGGCATGGACGAATTTAGGGGT
GACAGAGATGCGCGCGGGGCATACTGAGGCAGCACAGGAAGCGTATGATC
GTGCAATGGACCTAGCACCGTGGGATGTGACTCCTCGGTTCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74708:768..1061+

>mRNA_M-pyrifera_M_contig74708.17671.1 ID=mRNA_M-pyrifera_M_contig74708.17671.1|Name=mRNA_M-pyrifera_M_contig74708.17671.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig74708:768..1061+ (Macrocystis pyrifera P11B4 male)
ATGTGCCACACTATCTTCCTTTCAGTACTATTGTGTGTATTTGTTGTTGT
GGGTGCCATGGATGAGGATGATTTTGAGCATTTGATGCAAGAGGCGATTG
ATGCTGGATCGAAGGGAGATTTGCAGCGTGCGCTGCCACTTTTTCGGCGT
CTTGCTGAGCTAGACTCTGAGAATTCTGCGGCATGGACGAATTTAGGGGT
GACAGAGATGCGCGCGGGGCATACTGAGGCAGCACAGGAAGCGTATGATC
GTGCAATGGACCTAGCACCGTGGGATGTGACTCCTCGGTTCAATATGTGC
CACACTATCTTCCTTTCAGTACTATTGTGTGTATTTGTTGTTGTGGGTGC
CATGGATGAGGATGATTTTGAGCATTTGATGCAAGAGGCGATTGATGCTG
GATCGAAGGGAGATTTGCAGCGTGCGCTGCCACTTTTTCGGCGTCTTGCT
GAGCTAGACTCTGAGAATTCTGCGGCATGGACGAATTTAGGGGTGACAGA
GATGCGCGCGGGGCATACTGAGGCAGCACAGGAAGCGTATGATCGTGCAA
TGGACCTAGCACCGTGGGATGTGACTCCTCGGTTCAAT
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